mRNA_S-ischiensis_contig110.2396.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig110.2396.1
Unique NamemRNA_S-ischiensis_contig110.2396.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Match: A0A7U3S1F0_9STRA (Probable RuBisCO transcriptional regulator n=1 Tax=Schizocladia ischiensis TaxID=196139 RepID=A0A7U3S1F0_9STRA)

HSP 1 Score: 126 bits (317), Expect = 4.660e-33
Identity = 59/60 (98.33%), Postives = 60/60 (100.00%), Query Frame = 2 
Query:    2 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKK 181
            SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKK+
Sbjct:  133 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKE 192
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BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Match: A0A3G1IV96_9EUKA (Probable RuBisCO transcriptional regulator n=2 Tax=Glaucocystis TaxID=38258 RepID=A0A3G1IV96_9EUKA)

HSP 1 Score: 87.8 bits (216), Expect = 3.050e-18
Identity = 38/60 (63.33%), Postives = 49/60 (81.67%), Query Frame = 2 
Query:    2 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKK 181
            S+ RISW VANGQ+D+A++GG +P EL+ +LK+TPY EDELALI PKSHPFS    I+K+
Sbjct:  133 STRRISWNVANGQVDLAVIGGEVPIELQESLKITPYAEDELALILPKSHPFSKVDNIQKE 192
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BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Match: A0A1X9PTY7_9RHOD (Probable RuBisCO transcriptional regulator n=2 Tax=Rhodellaceae TaxID=661029 RepID=A0A1X9PTY7_9RHOD)

HSP 1 Score: 87.4 bits (215), Expect = 4.450e-18
Identity = 39/60 (65.00%), Postives = 49/60 (81.67%), Query Frame = 2 
Query:    2 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKK 181
            S+ RISW VANGQ+DIA++GG +P+EL+  L+VT Y EDELALI PKSHPF+N   IKK+
Sbjct:  133 STRRISWSVANGQVDIAVVGGEVPSELQEILQVTSYAEDELALILPKSHPFANIEHIKKE 192
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BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Match: A0A1C9CEC5_9RHOD (Probable RuBisCO transcriptional regulator n=5 Tax=Compsopogonophyceae TaxID=930023 RepID=A0A1C9CEC5_9RHOD)

HSP 1 Score: 86.7 bits (213), Expect = 8.410e-18
Identity = 39/60 (65.00%), Postives = 48/60 (80.00%), Query Frame = 2 
Query:    2 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKK 181
            S+ RISW VANGQ+D+A++GG IP+EL+  L+VT Y EDELALI PKSHPFS    IKK+
Sbjct:  133 STRRISWSVANGQVDLAVIGGEIPSELQQVLQVTSYAEDELALILPKSHPFSTSANIKKE 192
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BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Match: A0A1C9CCJ7_9RHOD (Probable RuBisCO transcriptional regulator n=9 Tax=Rhodophyta TaxID=2763 RepID=A0A1C9CCJ7_9RHOD)

HSP 1 Score: 85.1 bits (209), Expect = 2.910e-17
Identity = 39/60 (65.00%), Postives = 47/60 (78.33%), Query Frame = 2 
Query:    2 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKK 181
            S+ RISW VANGQ+D+AI+GG IP EL++ L VT Y EDELALI PKSHPFS    I+K+
Sbjct:  133 STRRISWSVANGQVDLAIIGGEIPYELQDTLHVTSYAEDELALILPKSHPFSQLKNIRKE 192
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BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Match: W0RYG2_PORPP (Probable RuBisCO transcriptional regulator n=2 Tax=Porphyridium TaxID=2791 RepID=W0RYG2_PORPP)

HSP 1 Score: 85.1 bits (209), Expect = 3.080e-17
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 2 
Query:    2 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKK 181
            S+ RI+W VANGQID+A++GG IP+EL+  L++T Y EDELALI PKSHPFS    IKK+
Sbjct:  133 STRRIAWSVANGQIDLAVIGGEIPSELKQILQITSYAEDELALILPKSHPFSKYQNIKKE 192
[Close]
BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Match: UPI001FCD8B3A (LysR transcriptional regulator n=1 Tax=Glaucosphaera vacuolata TaxID=38265 RepID=UPI001FCD8B3A)

HSP 1 Score: 84.7 bits (208), Expect = 3.960e-17
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 2 
Query:    2 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKK 181
            S+ RISW VANGQIDIAI+GG IP EL+  L VTPY EDELALI P SHPF+    IKK+
Sbjct:  133 STRRISWSVANGQIDIAIIGGEIPFELKEVLHVTPYAEDELALILPTSHPFAKLTNIKKE 192
[Close]
BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Match: A0A1X9PUH9_9RHOD (Probable RuBisCO transcriptional regulator n=3 Tax=Porphyridiaceae TaxID=2799 RepID=A0A1X9PUH9_9RHOD)

HSP 1 Score: 84.7 bits (208), Expect = 4.280e-17
Identity = 38/60 (63.33%), Postives = 47/60 (78.33%), Query Frame = 2 
Query:    2 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKK 181
            S+ RI+W VANGQID+A++GG IP EL+  L++T Y EDELALI PKSHPFS    IKK+
Sbjct:  133 STRRIAWSVANGQIDLAVIGGEIPLELKQTLQITSYAEDELALILPKSHPFSKMKDIKKE 192
[Close]
BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Match: RBCR_CYAPA (Probable RuBisCO transcriptional regulator n=4 Tax=Cyanophora TaxID=2761 RepID=RBCR_CYAPA)

HSP 1 Score: 84.7 bits (208), Expect = 4.670e-17
Identity = 34/60 (56.67%), Postives = 48/60 (80.00%), Query Frame = 2 
Query:    2 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKK 181
            S+ RISW +ANGQ+D+A++GG +P+EL+ +L +TPY EDEL LI PKSHPF+    I+K+
Sbjct:  135 STRRISWNIANGQVDLAVIGGEVPHELQESLTITPYAEDELVLILPKSHPFAKLESIQKE 194
[Close]
BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Match: A0A1Z1XBB8_9RHOD (Probable RuBisCO transcriptional regulator n=3 Tax=Compsopogonales TaxID=930024 RepID=A0A1Z1XBB8_9RHOD)

HSP 1 Score: 84.3 bits (207), Expect = 6.280e-17
Identity = 38/60 (63.33%), Postives = 48/60 (80.00%), Query Frame = 2 
Query:    2 SSHRISWGVANGQIDIAIMGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKK 181
            S+ RI+W VANGQ+D+A++GG IP+EL+  L+VT Y EDELALI PKSHPFS    IKK+
Sbjct:  135 STRRIAWNVANGQVDLAVIGGEIPSELKEVLQVTSYAEDELALILPKSHPFSQFKDIKKE 194
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2396.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A7U3S1F0_9STRA4.660e-3398.33Probable RuBisCO transcriptional regulator n=1 Tax... [more]
A0A3G1IV96_9EUKA3.050e-1863.33Probable RuBisCO transcriptional regulator n=2 Tax... [more]
A0A1X9PTY7_9RHOD4.450e-1865.00Probable RuBisCO transcriptional regulator n=2 Tax... [more]
A0A1C9CEC5_9RHOD8.410e-1865.00Probable RuBisCO transcriptional regulator n=5 Tax... [more]
A0A1C9CCJ7_9RHOD2.910e-1765.00Probable RuBisCO transcriptional regulator n=9 Tax... [more]
W0RYG2_PORPP3.080e-1763.33Probable RuBisCO transcriptional regulator n=2 Tax... [more]
UPI001FCD8B3A3.960e-1768.33LysR transcriptional regulator n=1 Tax=Glaucosphae... [more]
A0A1X9PUH9_9RHOD4.280e-1763.33Probable RuBisCO transcriptional regulator n=3 Tax... [more]
RBCR_CYAPA4.670e-1756.67Probable RuBisCO transcriptional regulator n=4 Tax... [more]
A0A1Z1XBB8_9RHOD6.280e-1763.33Probable RuBisCO transcriptional regulator n=3 Tax... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig110contigS-ischiensis_contig110:21747..22123 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryno signal peptide or anchor
Exons1
Model size377
Cds size141
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig110.2396.1prot_S-ischiensis_contig110.2396.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig110 21802..21942 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.8194323-UTR-S-ischiensis_contig110:21746..218011622815620.8194323-UTR-S-ischiensis_contig110:21746..21801Schizocladia ischiensis KU_0333UTRS-ischiensis_contig110 21747..21801 +
1695739809.322024-UTR-S-ischiensis_contig110:21746..218011695739809.322024-UTR-S-ischiensis_contig110:21746..21801Schizocladia ischiensis KU_0333UTRS-ischiensis_contig110 21747..21801 +
1622815620.8465962-UTR-S-ischiensis_contig110:21942..221231622815620.8465962-UTR-S-ischiensis_contig110:21942..22123Schizocladia ischiensis KU_0333UTRS-ischiensis_contig110 21943..22123 +
1695739809.3436441-UTR-S-ischiensis_contig110:21942..221231695739809.3436441-UTR-S-ischiensis_contig110:21942..22123Schizocladia ischiensis KU_0333UTRS-ischiensis_contig110 21943..22123 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.834257-CDS-S-ischiensis_contig110:21801..219421622815620.834257-CDS-S-ischiensis_contig110:21801..21942Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 21802..21942 +
1695739809.3323758-CDS-S-ischiensis_contig110:21801..219421695739809.3323758-CDS-S-ischiensis_contig110:21801..21942Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 21802..21942 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig110.2396.1

>prot_S-ischiensis_contig110.2396.1 ID=prot_S-ischiensis_contig110.2396.1|Name=mRNA_S-ischiensis_contig110.2396.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=47bp
MGGHIPNELENNLKVTPYVEDELALIFPKSHPFSNRYQIKKKICMT*
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mRNA from alignment at S-ischiensis_contig110:21747..22123+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig110.2396.1 ID=mRNA_S-ischiensis_contig110.2396.1|Name=mRNA_S-ischiensis_contig110.2396.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=377bp|location=Sequence derived from alignment at S-ischiensis_contig110:21747..22123+ (Schizocladia ischiensis KU_0333)
TTCTAGTCACCGCATTTCTTGGGGTGTGGCAAATGGTCAAATAGATATTG
CTATTATGGGAGGGCATATACCAAATGAATTAGAAAATAATTTAAAAGTT
ACTCCTTATGTAGAAGATGAATTAGCTTTAATATTTCCCAAGTCTCATCC
GTTTTCGAATCGGTATCAAATAAAAAAGAAGATTTGTATGACTTAAATTT
TATAACATTGGAAACAGACTCAATGCTGCGAAAATTAATGGAGGATTTGT
TAAATCAACATGGTATTGATAATTCTCGTTTAAAAATAGGAATGGAACTT
AATTCCGTTGAAGCAATAAAAATGCAGTTCAATCAGGTTTAGGTGTAGCT
TTTGTTTCTGTGTCAACAATAATAAAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig110:21747..22123+

>mRNA_S-ischiensis_contig110.2396.1 ID=mRNA_S-ischiensis_contig110.2396.1|Name=mRNA_S-ischiensis_contig110.2396.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=282bp|location=Sequence derived from alignment at S-ischiensis_contig110:21747..22123+ (Schizocladia ischiensis KU_0333)
ATGGGAGGGCATATACCAAATGAATTAGAAAATAATTTAAAAGTTACTCC
TTATGTAGAAGATGAATTAGCTTTAATATTTCCCAAGTCTCATCCGTTTT
CGAATCGGTATCAAATAAAAAAGAAGATTTGTATGACTTAAATGGGAGGG
CATATACCAAATGAATTAGAAAATAATTTAAAAGTTACTCCTTATGTAGA
AGATGAATTAGCTTTAATATTTCCCAAGTCTCATCCGTTTTCGAATCGGT
ATCAAATAAAAAAGAAGATTTGTATGACTTAA
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