mRNA_S-ischiensis_contig110.2395.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig110.2395.1
Unique NamemRNA_S-ischiensis_contig110.2395.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Match: A0A4V6A8Q8_POPAL (H(+)-transporting two-sector ATPase n=1 Tax=Populus alba TaxID=43335 RepID=A0A4V6A8Q8_POPAL)

HSP 1 Score: 127 bits (318), Expect = 1.380e-36
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 195
            SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP IVGEEHY+T
Sbjct:   16 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPQIVGEEHYET 80
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BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Match: A0A193CI53_9FABA (ATP synthase beta subunit (Fragment) n=1 Tax=Trifolium echinatum TaxID=97022 RepID=A0A193CI53_9FABA)

HSP 1 Score: 126 bits (317), Expect = 3.260e-36
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 195
            SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP IVGEEHY+T
Sbjct:   50 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYQT 114
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BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Match: A0A193CI38_9FABA (ATP synthase beta subunit (Fragment) n=1 Tax=Lotus peregrinus TaxID=181282 RepID=A0A193CI38_9FABA)

HSP 1 Score: 126 bits (317), Expect = 3.460e-36
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 195
            SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP IVGEEHY+T
Sbjct:   49 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYET 113
[Close]
BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Match: A0A193CI33_9APIA (ATP synthase beta subunit (Fragment) n=1 Tax=Bupleurum lancifolium TaxID=198842 RepID=A0A193CI33_9APIA)

HSP 1 Score: 126 bits (317), Expect = 3.570e-36
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 195
            SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP IVGEEHY+T
Sbjct:   49 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYET 113
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BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Match: A1BQG6_CUCSA (H(+)-transporting two-sector ATPase (Fragment) n=1 Tax=Cucumis sativus TaxID=3659 RepID=A1BQG6_CUCSA)

HSP 1 Score: 126 bits (317), Expect = 4.020e-36
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 195
            SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP IVGEEHY+T
Sbjct:   31 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYET 95
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BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Match: A0A6C0G9A9_9MONI (ATP synthase subunit beta (Fragment) n=2 Tax=Polypodiopsida TaxID=241806 RepID=A0A6C0G9A9_9MONI)

HSP 1 Score: 130 bits (326), Expect = 6.730e-36
Identity = 65/65 (100.00%), Postives = 65/65 (100.00%), Query Frame = 1 
Query:    1 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 195
            SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT
Sbjct:   96 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 160
[Close]
BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Match: A0A5D2D3H8_GOSDA (H(+)-transporting two-sector ATPase n=1 Tax=Gossypium darwinii TaxID=34276 RepID=A0A5D2D3H8_GOSDA)

HSP 1 Score: 126 bits (317), Expect = 7.470e-36
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 195
            SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP IVGEEHY+T
Sbjct:   18 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYET 82
[Close]
BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Match: A0A5K1HLJ6_9MAGN (H(+)-transporting two-sector ATPase (Fragment) n=1 Tax=Nymphaea colorata TaxID=210225 RepID=A0A5K1HLJ6_9MAGN)

HSP 1 Score: 126 bits (317), Expect = 8.150e-36
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 195
            SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP IVGEEHY+T
Sbjct:   31 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYET 95
[Close]
BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Match: A0A193CI30_9ASTR (ATP synthase beta subunit (Fragment) n=2 Tax=Cichorieae TaxID=219121 RepID=A0A193CI30_9ASTR)

HSP 1 Score: 125 bits (315), Expect = 8.350e-36
Identity = 63/65 (96.92%), Postives = 63/65 (96.92%), Query Frame = 1 
Query:    1 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 195
            SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP IVGEEHY T
Sbjct:   40 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYDT 104
[Close]
BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Match: A0A2G2WSY0_CAPBA (ATP synthase subunit beta, chloroplastic n=2 Tax=Pentapetalae TaxID=1437201 RepID=A0A2G2WSY0_CAPBA)

HSP 1 Score: 126 bits (317), Expect = 8.390e-36
Identity = 63/65 (96.92%), Postives = 64/65 (98.46%), Query Frame = 1 
Query:    1 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPSIVGEEHYKT 195
            SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQP IVGEEHY+T
Sbjct:   32 SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTSTMLQPRIVGEEHYET 96
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig110.2395.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A4V6A8Q8_POPAL1.380e-3696.92H(+)-transporting two-sector ATPase n=1 Tax=Populu... [more]
A0A193CI53_9FABA3.260e-3696.92ATP synthase beta subunit (Fragment) n=1 Tax=Trifo... [more]
A0A193CI38_9FABA3.460e-3696.92ATP synthase beta subunit (Fragment) n=1 Tax=Lotus... [more]
A0A193CI33_9APIA3.570e-3696.92ATP synthase beta subunit (Fragment) n=1 Tax=Buple... [more]
A1BQG6_CUCSA4.020e-3696.92H(+)-transporting two-sector ATPase (Fragment) n=1... [more]
A0A6C0G9A9_9MONI6.730e-36100.00ATP synthase subunit beta (Fragment) n=2 Tax=Polyp... [more]
A0A5D2D3H8_GOSDA7.470e-3696.92H(+)-transporting two-sector ATPase n=1 Tax=Gossyp... [more]
A0A5K1HLJ6_9MAGN8.150e-3696.92H(+)-transporting two-sector ATPase (Fragment) n=1... [more]
A0A193CI30_9ASTR8.350e-3696.92ATP synthase beta subunit (Fragment) n=2 Tax=Cicho... [more]
A0A2G2WSY0_CAPBA8.390e-3696.92ATP synthase subunit beta, chloroplastic n=2 Tax=P... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig110contigS-ischiensis_contig110:9474..9670 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeBacteria
Seed ortholog score129.4
Seed ortholog evalue6e-28
Seed eggNOG ortholog1140.Synpcc7942_2315
Preferred nameatpD
KEGG koko:K02112
KEGG TC3.A.2.1
KEGG Pathwayko00190,ko00195,ko01100,map00190,map00195,map01100
KEGG ModuleM00157
GOsGO:0003674,GO:0003824,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005886,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006753,GO:0006754,GO:0006793,GO:0006796,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0008150,GO:0008152,GO:0008324,GO:0009058,GO:0009117,GO:0009123,GO:0009124,GO:0009126,GO:0009127,GO:0009141,GO:0009142,GO:0009144,GO:0009145,GO:0009150,GO:0009152,GO:0009156,GO:0009161,GO:0009165,GO:0009167,GO:0009168,GO:0009199,GO:0009201,GO:0009205,GO:0009206,GO:0009259,GO:0009260,GO:0009987,GO:0015075,GO:0015077,GO:0015078,GO:0015318,GO:0015399,GO:0015405,GO:0015672,GO:0015985,GO:0015986,GO:0016020,GO:0016462,GO:0016469,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0017144,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0019829,GO:0022804,GO:0022853,GO:0022857,GO:0022890,GO:0032991,GO:0033178,GO:0034220,GO:0034641,GO:0034654,GO:0036442,GO:0042623,GO:0042625,GO:0042626,GO:0043492,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044424,GO:0044425,GO:0044459,GO:0044464,GO:0044769,GO:0045259,GO:0045260,GO:0045261,GO:0045262,GO:0046034,GO:0046390,GO:0046483,GO:0046933,GO:0046961,GO:0051179,GO:0051234,GO:0055085,GO:0055086,GO:0071704,GO:0071944,GO:0072521,GO:0072522,GO:0090407,GO:0090662,GO:0098655,GO:0098660,GO:0098662,GO:0098796,GO:0098797,GO:0099131,GO:0099132,GO:1901135,GO:1901137,GO:1901293,GO:1901360,GO:1901362,GO:1901564,GO:1901566,GO:1901576,GO:1902600
EggNOG free text desc.Produces ATP from ADP in the presence of a proton gradient across the membrane. The catalytic sites are hosted primarily by the beta subunits
EggNOG OGs1G1BK@1117,1GZ3K@1129,COG0055@1,COG0055@2
EC3.6.3.14
COG Functional cat.F
BiGG Reactione_coli_core.b3732,iAF1260.b3732,iAPECO1_1312.APECO1_2729,iB21_1397.B21_03560,iBWG_1329.BWG_3423,iE2348C_1286.E2348C_4042,iEC042_1314.EC042_4119,iEC55989_1330.EC55989_4207,iECABU_c1320.ECABU_c42160,iECBD_1354.ECBD_4300,iECB_1328.ECB_03616,iECDH10B_1368.ECDH10B_3919,iECDH1ME8569_1439.ECDH1ME8569_3620,iECD_1391.ECD_03616,iECED1_1282.ECED1_4422,iECH74115_1262.ECH74115_5168,iECIAI1_1343.ECIAI1_3916,iECIAI39_1322.ECIAI39_4336,iECNA114_1301.ECNA114_3881,iECO103_1326.ECO103_4426,iECO111_1330.ECO111_4566,iECO26_1355.ECO26_4846,iECOK1_1307.ECOK1_4181,iECP_1309.ECP_3931,iECS88_1305.ECS88_4154,iECSE_1348.ECSE_4022,iECSF_1327.ECSF_3580,iECSP_1301.ECSP_4782,iECUMN_1333.ECUMN_4262,iECW_1372.ECW_m4035,iECs_1301.ECs4674,iEKO11_1354.EKO11_4613,iETEC_1333.ETEC_4023,iEcDH1_1363.EcDH1_4235,iEcE24377_1341.EcE24377A_4247,iEcSMS35_1347.EcSMS35_4100,iEcolC_1368.EcolC_4262,iG2583_1286.G2583_4528,iJO1366.b3732,iJR904.b3732,iLF82_1304.LF82_0194,iNRG857_1313.NRG857_18585,iPC815.YPO4121,iSFV_1184.SFV_3758,iSF_1195.SF3812,iSFxv_1172.SFxv_4154,iSSON_1240.SSON_3887,iS_1188.S3956,iSbBS512_1146.SbBS512_E4189,iUMN146_1321.UM146_18850,iUMNK88_1353.UMNK88_4544,iUTI89_1310.UTI89_C4285,iWFL_1372.ECW_m4035,iY75_1357.Y75_RS18410,iZ_1308.Z5230,ic_1306.c4658
Best tax levelSynechococcus
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko00194,ko01000
Hectar predicted targeting categoryother localisation
Exons1
Model size199
Cds size195
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815620.7795427-CDS-S-ischiensis_contig110:9473..96681622815620.7795427-CDS-S-ischiensis_contig110:9473..9668Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 9474..9668 +
1695739809.3076284-CDS-S-ischiensis_contig110:9473..96681695739809.3076284-CDS-S-ischiensis_contig110:9473..9668Schizocladia ischiensis KU_0333CDSS-ischiensis_contig110 9474..9668 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig110.2395.1prot_S-ischiensis_contig110.2395.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig110 9474..9668 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig110.2395.1

>prot_S-ischiensis_contig110.2395.1 ID=prot_S-ischiensis_contig110.2395.1|Name=mRNA_S-ischiensis_contig110.2395.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=65bp
SIQAVYVPADDLTDPAPATTFAHLDATTVLSRGLAAKGIYPAVDPLDSTS
TMLQPSIVGEEHYKT
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mRNA from alignment at S-ischiensis_contig110:9474..9670+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig110.2395.1 ID=mRNA_S-ischiensis_contig110.2395.1|Name=mRNA_S-ischiensis_contig110.2395.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=197bp|location=Sequence derived from alignment at S-ischiensis_contig110:9474..9670+ (Schizocladia ischiensis KU_0333)
TCAATTCAAGCTGTGTATGTACCTGCAGATGATTTAACTGATCCTGCACC
AGCAACAACCTTTGCTCATCTTGATGCTACGACCGTCTTATCAAGAGGTT
TAGCAGCAAAAGGAATATACCCTGCTGTTGATCCATTGGATTCTACATCA
ACAATGTTACAGCCATCTATTGTTGGGGAAGAACACTATAAAACGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig110:9474..9670+

>mRNA_S-ischiensis_contig110.2395.1 ID=mRNA_S-ischiensis_contig110.2395.1|Name=mRNA_S-ischiensis_contig110.2395.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=390bp|location=Sequence derived from alignment at S-ischiensis_contig110:9474..9670+ (Schizocladia ischiensis KU_0333)
TCAATTCAAGCTGTGTATGTACCTGCAGATGATTTAACTGATCCTGCACC
AGCAACAACCTTTGCTCATCTTGATGCTACGACCGTCTTATCAAGAGGTT
TAGCAGCAAAAGGAATATACCCTGCTGTTGATCCATTGGATTCTACATCA
ACAATGTTACAGCCATCTATTGTTGGGGAAGAACACTATAAAACGTCAAT
TCAAGCTGTGTATGTACCTGCAGATGATTTAACTGATCCTGCACCAGCAA
CAACCTTTGCTCATCTTGATGCTACGACCGTCTTATCAAGAGGTTTAGCA
GCAAAAGGAATATACCCTGCTGTTGATCCATTGGATTCTACATCAACAAT
GTTACAGCCATCTATTGTTGGGGAAGAACACTATAAAACG
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