mRNA_S-ischiensis_contig11.2349.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2349.1
Unique NamemRNA_S-ischiensis_contig11.2349.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2349.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:3228376..3232899 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score64.7
Seed ortholog evalue6.3e-08
Seed eggNOG ortholog2880.D8LJ88
KEGG koko:K12811
KEGG Pathwayko03040,map03040
GOsGO:0003674,GO:0003724,GO:0003824,GO:0004004,GO:0004386,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0008026,GO:0008104,GO:0008150,GO:0008186,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0032991,GO:0033036,GO:0035770,GO:0036464,GO:0042623,GO:0043186,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0044424,GO:0044444,GO:0044464,GO:0045495,GO:0051179,GO:0060293,GO:0070035,GO:0140098,GO:1990904
EggNOG free text desc.helicase activity
EggNOG OGsCOG0513@1,KOG0334@2759
EC3.6.4.13
COG Functional cat.JKL
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000,ko03041
Hectar predicted targeting categoryother localisation
Exons5
Model size675
Cds size672
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2349.1prot_S-ischiensis_contig11.2349.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 3228377..3232899 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815617.5063243-CDS-S-ischiensis_contig11:3228376..32284881622815617.5063243-CDS-S-ischiensis_contig11:3228376..3228488Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3228377..3228488 -
1695739806.929777-CDS-S-ischiensis_contig11:3228376..32284881695739806.929777-CDS-S-ischiensis_contig11:3228376..3228488Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3228377..3228488 -
1622815617.51802-CDS-S-ischiensis_contig11:3229505..32296631622815617.51802-CDS-S-ischiensis_contig11:3229505..3229663Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3229506..3229663 -
1695739806.9443345-CDS-S-ischiensis_contig11:3229505..32296631695739806.9443345-CDS-S-ischiensis_contig11:3229505..3229663Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3229506..3229663 -
1622815617.5278816-CDS-S-ischiensis_contig11:3231411..32315431622815617.5278816-CDS-S-ischiensis_contig11:3231411..3231543Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3231412..3231543 -
1695739806.9535496-CDS-S-ischiensis_contig11:3231411..32315431695739806.9535496-CDS-S-ischiensis_contig11:3231411..3231543Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3231412..3231543 -
1622815617.5376017-CDS-S-ischiensis_contig11:3232106..32323041622815617.5376017-CDS-S-ischiensis_contig11:3232106..3232304Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3232107..3232304 -
1695739806.9635825-CDS-S-ischiensis_contig11:3232106..32323041695739806.9635825-CDS-S-ischiensis_contig11:3232106..3232304Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3232107..3232304 -
1622815617.5506313-CDS-S-ischiensis_contig11:3232827..32328991622815617.5506313-CDS-S-ischiensis_contig11:3232827..3232899Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3232828..3232899 -
1695739806.9737837-CDS-S-ischiensis_contig11:3232827..32328991695739806.9737837-CDS-S-ischiensis_contig11:3232827..3232899Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 3232828..3232899 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2349.1

>prot_S-ischiensis_contig11.2349.1 ID=prot_S-ischiensis_contig11.2349.1|Name=mRNA_S-ischiensis_contig11.2349.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=224bp
QAVEEEDDEDFDGEYVGKGKGRGQGPAANGNGGAGESGVMPWPASDIFDE
HGNLRPRRAPPPVKLDPDGNDDPLDAFMDMLSATTVPVTQDNMSKAFGAG
DGGTGGGGADASMGEAFAGQAITYEQIMSGIKQEATCDSDIMASESEDGD
DYDEDGFAWRVSSKSTDGVPRRVVRRKNGQKVYAPDKFVPVEPGEEEAAR
EQAIHEGWLPPRDSAEGQGKTAKG
back to top

mRNA from alignment at S-ischiensis_contig11:3228376..3232899-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2349.1 ID=mRNA_S-ischiensis_contig11.2349.1|Name=mRNA_S-ischiensis_contig11.2349.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4524bp|location=Sequence derived from alignment at S-ischiensis_contig11:3228376..3232899- (Schizocladia ischiensis KU_0333)
CAGGCGGTGGAGGAGGAGGATGACGAGGACTTTGACGGGGAGTATGTCGG
CAAGGGGAAGGGCAGGGGCCAGGTGAGTTTTTTTCTGTTTGCGTGCCTGG
GTTTGTGTTGCCCGTGTGGTTGTTGCCATGGGCGGGGGGCGCAGGGCGGG
GAGGGGGTGTGCTTGCGCCCACGGCTCCGAGGTGTGTGTGTGTGTGTGTG
TGTGTGTGTTTGCATGTGCTCGCGCCGTGCTTGCCATGCGTGCAGAGAGT
GCGGACGACTGTTGGGCACGCGCGCGCCCTCTCTCTTCCCCCCCCCGGCA
CGAACGCCCGACGGCGGGCTGTTCTCTTGGGACCACGGGGTGCTGCATGC
ACAACAGCAGTGCTCGAACATGTACGAGTATATGTGTACGTGTGTATGTA
CTCTATATACACATATACTCCACTACGTAGTGTATTTGTATGCATGTACT
GCAAGCAGTAGGTGTGTTGGCCGGGGAGTCATTGTCGGGGCCCCCAACCG
AAAACACACACATACACACGCACAACTCCGCCGCCCTCCCCGCTCCCCCC
CTTTTCCGTCCCCTCCAACCAACCCCCGACCAACAACCGCGGCAGGGCCC
CGCGGCCAACGGCAACGGCGGCGCCGGAGAGAGCGGGGTCATGCCCTGGC
CGGCCTCGGACATCTTCGACGAGCACGGCAACCTCCGGCCGCGCAGGGCC
CCGCCGCCGGTGAAGCTGGACCCTGATGGCAATGATGACCCCCTGGATGC
CTTCATGGACATGCTGAGCGCCACTACCGTGCCCGTGACGCAGGTGGGGG
AGGCGGCCGGCTGGGGTGCCCTGTGTGTGCGCGCGCGTGTGTGTGTGTGT
GTGTGTGTGTGCCTGTGTGCGTGCGTATGTATGTACTCACATTGTGCTTG
CCGGAGTCCCGAGACCGTTGACCACGCGTGTGCATGTGCATTGTGTGTGT
GTGTGTGTGTGTGTGTGCACGTGCGCCCGTGTTTGCGTGTCTGTGCGCGT
GCTGCGGGCGCGGATGAAGTCTGCTCGGGTGCCTGGGTTTGCCTTTCGAC
TCGCCGACCGGATGTACTTCGAAGTATACCACTTTCTACATGGTACGTTC
TCGTGGCCGGGGAAACAGGTGCGTTGTTGTTTGTTACAGGCACCTTTGCG
TTGGCAGAGAAGAAGAAAACACGACTCTCTGAACGTTATGTACGGCTTGC
TTTGTGTGTGAGACTAAACTCAACCTTCCCCCTCTGCCCCTCCTCATCTC
CTCCTCCTCCTCCTCCTCCTCCCTCTCCTCCTCCTGCTCCCCCTCCCCGT
GCTGGCCACTCTCCTCCCTGCCCCCCCCGGCCCCCGCCGTTTGCCGTGAC
GAGCAGGACAACATGAGCAAGGCGTTTGGGGCTGGGGACGGGGGCACGGG
TGGGGGGGGCGCGGACGCCTCCATGGGAGAGGCCTTCGCGGGCCAGGCCA
TCACCTATGAGCAGATCATGTCCGGCATTAAACAGGAGGTGATTCCTATA
AATTGTAACGAGGTACAATCACACATGTGTGAGATTGACTGTTCTGATTA
GACAGGGGGTTCGTCTGTCCCTCTGTCCATCTGTCTGTGATGGAAGTGAA
GAGCAGATCATGTCCGGCATTAAACAGGAGGTTCGTCTGGCCATCTCTAG
TGGAAGTATAGAGCAGATCATGTCCGGCATTCAACAGGAGGTTCGTCTGT
CCGTCTGTAAAAGTCCGTCTGTAGTGGGAGTGAAGAGGCAGGCGGTCGCC
TGCCTGCCGCAAGACATACGAATAGGTGCACTGAGTAGATCATGTCCGGC
ATTAAACAGGACGTGATTCCTATGAATTGTAATGGGGTACAATCGCACGT
GTGTGAGATTGACTGTTCTCATTAAACAGGAGGTTCGTCTGTCCGTCTGT
CCGTCCGTCTGTGATGGAAGAGAAGAGCAGATCATGTCCGGCACTAAACG
GGAGGTTCGTCTGGCCGTCTGTAGTGGAAGTGAAGAGACAGGCGGCTGTC
TGCCTGCAGCAAGGCATAACTACGAATAGGTGCACTGAGTGTCACTCTGG
AGCTCGATACTTACGAGCAGATCATGTCCGTCATTGAACAGGAGGTTCGT
CTGTCCGTCTGTAAAAGTCCGTCTGTGGTGGAAGTGAACAGACAGGCAGC
TGTCTGCCTGCGGCAAGACACAAGTACGAATAGGTGCACTGAGTGTCACT
CTGGAGCTCGATAATTACAAGCAGATCATGTCCGACATTAAACAGCAGGT
TCGTCTGTCTGTCTGTAAAAGTCCGTCTGTTGTAGAAGTGAAGAGACAGG
CGGCTCTCTGCCTGCAGCAAGACAGAAGTACGAATAGGTGCACTGAGTGT
CACTCTGGACTCGGTACTCTGCTTGCCGGCAAATACAGGCCTGTGGTGGC
TGCCGCCGCCGCCGCCACCGCCGCCGCCGCCGCTGCTAACGCTGCTGCTG
CTGCTGCTGCTGCTCCTGCTATATATATACTCGACTATATATATATATAT
GGCCCTCATGCCTCATGAACCAGATTTCAACTTACCTACCCCAGACATGC
TGCAAGCCAGCCGTAGTAACTTAGACGTCAACCTACCGTCCCCTTCGCCC
CTGATGGAGCCCCTGAAGCACCCCTCCCTTCTCCCTCCTGGTTGCCCTAC
TACTCATCCGATGATGAGGGACTCCGAAGAAGGAGGGAGATCGTTCCCTT
GACTACTTGGTTGTTTTCGGGCTCTTCCATTAAGTACTTTGTTGTTTTCG
GGCTCTTCTCTTAACTACTTGGTTGTTTTCGGGCTCTTCTCTTAACTACG
TGGTTGTTTTCAGGCTCGTTCTCTTGTCTACAGTACTTGGTCGTTTTCAC
TGCAGGCTACGTGCGACTCGGACATCATGGCCTCCGAGTCTTGTGTGCGA
TTGACTGTTCTCGTACTACTAGTAGTTGTCGCATTTAATATTTGATTGTT
GTTATACTACATAGTGATTATCACATCTAGGTGAGGTCCCCACCTTAGGT
TGTTGGGACGGGGCCTGGAACTCGCATGCCATCAAAATAGTTTAAAATCA
AGGATCTAGGAACAAGACCCTGCTGTTGGTGCAGGCTCCGTGCGACTCAG
ACATCATGGCCTCCGAAGAAGGAGGGAGATGGTTCCCTTAACTACTACTT
GGTTGTTTTCGGGCTCTTCTCTTGACTACTTGGTTGTTTTCAGGCTCGTT
CTCTGAAACTACTGTACTTGGTCGTTTTCGCTGCAGGCTACATGCGACTC
GGACATCATGGCCTCCGAGTCGGAGGACGGGGACGACTACGACGAGGACG
GGTTCGCCTGGCGCGTGTCGTCCAAGTCCACCGACGGCGTGCCCCGCCGC
GTGGTGCGGCGCAAGAACGGCCAGAAGGTCTACGCCCCAGACAAGTGAGT
GGTGCCTGCCGCGATAGTTTTAGTGCGATTATTCCCGGCACGCACACCGA
CTGCTGCCCAGTGACTCGGAGGTACTTGCTGCGGCACAGTGATGGGATAT
CTAAGCAAATCAACCTACAGTAGTTATCGACGGTACTGATCTATTTATCT
ATCGGTAGTCGGTATTTTATAGTTCAAGTCCAAGTAGTTAGTAACGCCAC
CCACAAAATCAGTTGAGCCGTAGCTATCTACTCGTACTGATCAATGTTCC
ATCACTGCTTCCTGCGGTACAGTGACTTGTCGAAAGGCATCTGCGAGGCA
CAGTCTAACGTGTCTGAGATTGAGTTGTGTGCTCGCTTGGGTGAACGCCT
CCAAGTATATACTTGGAAGTATGTGTGTACTGTTAGACTCATTGGCTTGT
CTTGCGATATAACCTTGCGCGCACTGACGACAGCCCTGAGTCGAAGATTC
GGGTTCGCCGTCCGACAGAGGTAGTAGTCCTGTAAGTACCATACGGTATG
TTCCATCCCGGCCCAGTAGGGACGCGGGGCCAATGGCTGAAAGGCTACCC
TGCGGGGATATTACTGGCCGGCGGTCCGGTGAGTAGTGTAGTGGGCCGAC
GGTCGGTGGCATGCACGGGAGGGGTTGCAATATCAACCCTGTCTGACATG
AGTAGGCACACACGCAGCGCGTAGCACTGTAGCAGTACAGTACCGTAGAG
TACTTCATTGTGAGCACTGGAGTGCTGTAGTACTGTATGTACTACAGTAC
AGTAGTACCTGTACTCGTGCTGCATAGTACCGTGCTTGGAGGTGTGCATG
TGCTGGTGTGCCGTGTGCACATCAGTGGCGCCAGGGCTGCACGCGCCGCG
GACGCATCACGCACACACGCACACATACACACACACACTCTCTCTGTCTC
TTTCTCTGTCTCTCTCTGTCTGTCTGTGTCTGTCTGTCTCTGTCTCTGTC
TCTCTGTCCATGCCCACCCACTCATCCCCCCCCCCCACCACCGCCGCGAC
CGGCTGGCCAGATTCGTCCCCGTGGAGCCTGGCGAGGAGGAGGCCGCCCG
GGAACAGGCCATTCACGAGGGGTGGCTGCCACCACGGGACTCCGCTGAAG
GCCAGGGAAAAACCGCGAAAGGGT
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:3228376..3232899-

>mRNA_S-ischiensis_contig11.2349.1 ID=mRNA_S-ischiensis_contig11.2349.1|Name=mRNA_S-ischiensis_contig11.2349.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1344bp|location=Sequence derived from alignment at S-ischiensis_contig11:3228376..3232899- (Schizocladia ischiensis KU_0333)
CAGGCGGTGGAGGAGGAGGATGACGAGGACTTTGACGGGGAGTATGTCGG
CAAGGGGAAGGGCAGGGGCCAGCAGGCGGTGGAGGAGGAGGATGACGAGG
ACTTTGACGGGGAGTATGTCGGCAAGGGGAAGGGCAGGGGCCAGGGCCCC
GCGGCCAACGGCAACGGCGGCGCCGGAGAGAGCGGGGTCATGCCCTGGCC
GGCCTCGGACATCTTCGACGAGCACGGCAACCTCCGGCCGCGCAGGGCCC
CGCCGCCGGTGAAGCTGGACCCTGATGGCAATGATGACCCCCTGGATGCC
TTCATGGACATGCTGAGCGCCACTACCGTGCCCGTGACGCAGGGCCCCGC
GGCCAACGGCAACGGCGGCGCCGGAGAGAGCGGGGTCATGCCCTGGCCGG
CCTCGGACATCTTCGACGAGCACGGCAACCTCCGGCCGCGCAGGGCCCCG
CCGCCGGTGAAGCTGGACCCTGATGGCAATGATGACCCCCTGGATGCCTT
CATGGACATGCTGAGCGCCACTACCGTGCCCGTGACGCAGGACAACATGA
GCAAGGCGTTTGGGGCTGGGGACGGGGGCACGGGTGGGGGGGGCGCGGAC
GCCTCCATGGGAGAGGCCTTCGCGGGCCAGGCCATCACCTATGAGCAGAT
CATGTCCGGCATTAAACAGGAGGACAACATGAGCAAGGCGTTTGGGGCTG
GGGACGGGGGCACGGGTGGGGGGGGCGCGGACGCCTCCATGGGAGAGGCC
TTCGCGGGCCAGGCCATCACCTATGAGCAGATCATGTCCGGCATTAAACA
GGAGGCTACATGCGACTCGGACATCATGGCCTCCGAGTCGGAGGACGGGG
ACGACTACGACGAGGACGGGTTCGCCTGGCGCGTGTCGTCCAAGTCCACC
GACGGCGTGCCCCGCCGCGTGGTGCGGCGCAAGAACGGCCAGAAGGTCTA
CGCCCCAGACAAGCTACATGCGACTCGGACATCATGGCCTCCGAGTCGGA
GGACGGGGACGACTACGACGAGGACGGGTTCGCCTGGCGCGTGTCGTCCA
AGTCCACCGACGGCGTGCCCCGCCGCGTGGTGCGGCGCAAGAACGGCCAG
AAGGTCTACGCCCCAGACAAATTCGTCCCCGTGGAGCCTGGCGAGGAGGA
GGCCGCCCGGGAACAGGCCATTCACGAGGGGTGGCTGCCACCACGGGACT
CCGCTGAAGGCCAGGGAAAAACCGCGAAAGGGATTCGTCCCCGTGGAGCC
TGGCGAGGAGGAGGCCGCCCGGGAACAGGCCATTCACGAGGGGTGGCTGC
CACCACGGGACTCCGCTGAAGGCCAGGGAAAAACCGCGAAAGGG
back to top