mRNA_S-ischiensis_contig11.2323.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2323.1 vs. uniprot
Match: D7FXE1_ECTSI (WD repeat-containing protein 60 n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FXE1_ECTSI) HSP 1 Score: 157 bits (397), Expect = 1.260e-37 Identity = 144/356 (40.45%), Postives = 190/356 (53.37%), Query Frame = 1
Query: 310 GSLAEPQQAILQKWQSGAVDRLEAAGEARRAVVRTDAAPANRSVVGSRKTLQATVPAAGSNEAEEVAD-YDEEGFEEYSDEFEDEDGPARAPQPLI-------ISSPGKKQVAG---VVSPAKVAAERAVPPTRSPD---MKELQEYLKLENQMAKERRSARPSLEADSKADAQNQPLSKGTAPGAKGAKRGRI---------AAAEAAASNWAGGGGIAGGTFTVVATSAEAQGGAGKPRTSGFRMSDAKALDRAIGKGDPRRARAAAIRAAAPLGEERAVLFDQVPVSALDMYQRRLRGQPPQLRQAATQTNEDCRDMDAQTDEIHTADKEAQFHLGHDDTALENLMRRMRLAR 1308
GS +AILQKW+S +A+ V R A P R + VP E E+ YD+E FEEYSDEF+ E G P P + ++ PG + G VVSPA + R ++PD ++EL++ L+ EN A+ER+ ARPS + A A + S A +GA EA+A+ +A G F+V A++ + + SGF+M+DAKAL RA+ KGDPR R AIR A+ L E LFDQVP+ +D+Y RRLRGQP +RQA TQTN+D R ++ QTDEI + KE QFHLGHDDTALENLMRR+R R
Sbjct: 148 GSGGGVDRAILQKWRS------DASAAVADDVGRNPALPDGR--------VAPQVPPDMEVEDEDCGGGYDDECFEEYSDEFDGE-GEDEGPPPPVGKATAASVTRPGSARGEGGGAVVSPA-LKMRRPGDNIQAPDDKVLEELRDSLREENIAARERKVARPSPKPSEAATADVK--SSSDAKAVRGAXXXXXXXXXXXXXXTGGEASAA-------VAKGKFSVDASADVKR----SRKGSGFKMADAKALTRALAKGDPRAERVRAIRGASRLEVESVRLFDQVPILPIDLYHRRLRGQPALIRQAGTQTNDDARSVEGQTDEIVQSHKEVQFHLGHDDTALENLMRRLRSNR 474
BLAST of mRNA_S-ischiensis_contig11.2323.1 vs. uniprot
Match: A0A835Z6D0_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z6D0_9STRA) HSP 1 Score: 93.2 bits (230), Expect = 2.230e-16 Identity = 98/298 (32.89%), Postives = 133/298 (44.63%), Query Frame = 1
Query: 493 EAEEVADYDEEGFEEYSDEFEDE---------DGPARAP---QPLIISSPGKKQVAGVVSPAKVAAER---AVPPTRSPDMKELQEYLKLENQMAKERRSARPSLEADSKADAQNQPLSKGTAPGAKGAKRGRIAAAEAAASNWAGGGGIAGGTFTVVATSAEAQGGAGKPRTSGFRMSDAKALDRAIGKGDPRRAR------AAAIRAAAPLGEERAVLFDQVPVSALDMYQRRLRG--------QPPQLRQAATQTNEDCRDMDAQTDEIHTADKEAQFHLGHDDTALENLMRRMR 1299
E ++ A Y +EGFE+YSDEFEDE PA+A +P + R +VP DMKEL+ + EN AK R+ RP+ E A A+ QP+++G +G + A A GG G G A +P T +R+++AKA+ + +G R AR A + AAA L ER VL+ PV L+ Y RLR QT +D RD+ QT+ AD EAQFH+G DDTALEN++ R R
Sbjct: 33 EVDDDAGYGDEGFEDYSDEFEDEAAGRSAAAVQAPAQASASKRPXXXXXXXXXXXXXXXXXXXXGSSRPSSSVPHATEADMKELRSAMDQENMEAKRARALRPT-EPPPHASAEQQPVAEG---------KGGVEGAGLRAKGRKGGAGEGAGPKGAAL--------AAQPATQQYRLAEAKAVSQRLGGAAARGARCGXXXXARSAAAAARLSTERFVLYSAAPVGPLERYHARLRSGGXXXXXXXXXXXXXXXXQTRDDDRDVGTQTETARAADAEAQFHMGSDDTALENMLARAR 312
BLAST of mRNA_S-ischiensis_contig11.2323.1 vs. uniprot
Match: A0A7S3XQJ7_HETAK (Hypothetical protein n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3XQJ7_HETAK) HSP 1 Score: 77.0 bits (188), Expect = 2.760e-11 Identity = 48/101 (47.52%), Postives = 64/101 (63.37%), Query Frame = 1
Query: 1066 LGEERAVLFDQVPVSALDMYQRRLRGQPPQLRQAATQTNEDCRDMDAQTDEIHTADKEAQFHLGHDDTALENLMRRMRLARGGDR--RRSSSSSQSEGATL 1362
L EER V F Q PV +MY R+LRG ++Q A Q+NED R ++ QTDE+ TAD+EAQF LG DDT EN++ +R G +R +R + SQ A+L
Sbjct: 28 LEEERHVAFSQQPVGPYEMYVRKLRGAAGSIKQVAAQSNEDDRAVEVQTDEVETADQEAQFQLG-DDTDFENVLAALRAGEGIERFVKRRGNLSQGNAASL 127
BLAST of mRNA_S-ischiensis_contig11.2323.1 vs. uniprot
Match: A0A7S2RRM8_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RRM8_9STRA) HSP 1 Score: 58.2 bits (139), Expect = 2.210e-5 Identity = 40/99 (40.40%), Postives = 58/99 (58.59%), Query Frame = 1
Query: 1003 RAIGKGDPRRARAAAIRAAAPLGEERAVLFDQVPVSALDMYQRRLRGQPPQLRQAATQTNEDCRDMDAQTDEIHTADKEAQFHLGHDDTALENLMRRMR 1299
R + DPR AR +I+ + E R V FDQ P + L++Y RR+RG+ + Q TQTN+D R ++ QT+E T ++E QF G DDT E + +R
Sbjct: 204 RKVQSDDPRLARLKSIQEKVAMEEGRFVAFDQNPQTPLEVYFRRMRGRGL-IAQTFTQTNDDARTVEVQTEETATQEQEIQFVFG-DDTEFERRLASVR 300 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2323.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 4
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following UTR feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2323.1 >prot_S-ischiensis_contig11.2323.1 ID=prot_S-ischiensis_contig11.2323.1|Name=mRNA_S-ischiensis_contig11.2323.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=460bp MEDLGDAAQKPGTTRSGGAKKSSSRRGSSPRRSSGGGSDAALPPSAEIKDback to top mRNA from alignment at S-ischiensis_contig11:2937120..2942596- Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2323.1 ID=mRNA_S-ischiensis_contig11.2323.1|Name=mRNA_S-ischiensis_contig11.2323.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5477bp|location=Sequence derived from alignment at S-ischiensis_contig11:2937120..2942596- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:2937120..2942596- >mRNA_S-ischiensis_contig11.2323.1 ID=mRNA_S-ischiensis_contig11.2323.1|Name=mRNA_S-ischiensis_contig11.2323.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2760bp|location=Sequence derived from alignment at S-ischiensis_contig11:2937120..2942596- (Schizocladia ischiensis KU_0333)back to top |