mRNA_S-ischiensis_contig11.2317.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2317.1
Unique NamemRNA_S-ischiensis_contig11.2317.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2317.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2899701..2902511 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size591
Cds size591
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2317.1prot_S-ischiensis_contig11.2317.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2899701..2902511 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815580.1375546-CDS-S-ischiensis_contig11:2899700..28999441622815580.1375546-CDS-S-ischiensis_contig11:2899700..2899944Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2899701..2899944 +
1695739782.9673126-CDS-S-ischiensis_contig11:2899700..28999441695739782.9673126-CDS-S-ischiensis_contig11:2899700..2899944Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2899701..2899944 +
1622815580.162823-CDS-S-ischiensis_contig11:2901464..29016091622815580.162823-CDS-S-ischiensis_contig11:2901464..2901609Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2901465..2901609 +
1695739782.9813683-CDS-S-ischiensis_contig11:2901464..29016091695739782.9813683-CDS-S-ischiensis_contig11:2901464..2901609Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2901465..2901609 +
1622815580.1775572-CDS-S-ischiensis_contig11:2902309..29025111622815580.1775572-CDS-S-ischiensis_contig11:2902309..2902511Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2902310..2902511 +
1695739782.9909232-CDS-S-ischiensis_contig11:2902309..29025111695739782.9909232-CDS-S-ischiensis_contig11:2902309..2902511Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2902310..2902511 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2317.1

>prot_S-ischiensis_contig11.2317.1 ID=prot_S-ischiensis_contig11.2317.1|Name=mRNA_S-ischiensis_contig11.2317.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=197bp
SGGGGGSSDVGATLCGPWPPLDPQGTEAASAAAARGADRGLHPPRPSAIA
CEGSTSDDSCSLTETPLPAGVLVWRRGSPATAGLRDVEEALKALRPPAAN
ASPETQQGRGGRVTLPGWLRAVRAVCVPHRVAVPGQPTPASHPGPQGNPP
KGPHSWLRVERACLSRPGLVFRYLGATLFPLPLPSPAVLAPDRGAEA
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mRNA from alignment at S-ischiensis_contig11:2899701..2902511+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2317.1 ID=mRNA_S-ischiensis_contig11.2317.1|Name=mRNA_S-ischiensis_contig11.2317.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2811bp|location=Sequence derived from alignment at S-ischiensis_contig11:2899701..2902511+ (Schizocladia ischiensis KU_0333)
AGTGGTGGTGGTGGTGGCAGCTCTGATGTGGGGGCGACACTCTGCGGCCC
TTGGCCGCCGCTTGACCCACAAGGAACAGAGGCGGCCTCCGCCGCTGCGG
CGCGGGGCGCTGACCGCGGGCTCCATCCACCACGTCCGTCAGCCATCGCC
TGCGAGGGGTCAACAAGCGATGACAGCTGTAGCCTGACGGAGACCCCCCT
GCCGGCTGGCGTGCTTGTGTGGAGGAGGGGGTCCCCAGCCACAGGTCAGT
GTGTTTGCCCTTGTATGTACTCATTGGTTTGTCTTGCGACATAACCTTGC
ATGCAATGCCGACAGCCCTAAGTCCTTGTGCGAGTGCTTCTATACTTCGA
AGTATATATGTACTCACGTTGTGCTTGCCGTCGTGCCGAGACCATTGACC
ATTTCTGCTTCAAGGCAGGCACGGTGCTCTACTTGAAACACTTTGCATTA
GCGCTTTTACCCCTGGGGTCCGTATATTCACAAGGTTTCAGTGTGCAAGT
CCGATTGGCCAGGGGTGAAAGGGTCAAGTACCTAGGGATAGTGCTCTGTA
TGTCGGTCACCCCTCGGTGGGCTGTGTGGCGATGCACCGTCTTCGAGTAG
TGGAGCAGGTACGACTCGCGGCCCCCCGGGCCGGCCTCTCGAAGGAGTAT
CGTACCCGCAAGGCGTTGGTTGGGACCAGGTACTTCCAAGCACAGGCACA
AGCAGTCGGGTGTTGTACTACTTTACACAGCGGTGCCTGGGCTGCTACTC
GTACGTACAGTGATACAGTACAGTGCGTACTAGAGTATGTACTGTACGGA
TACAGTGCTCCGTTTCGACCGAGGTGCGTGGTCATGGTCTCGGGACTCCG
GCAAGCACCACGTGAGTACACATACTACGTATATACTTGGAAGTATATAC
ATACAGTGGAGGGGTCCTGCTCCATCTCGACCGAGGCGCGCGGTCAATGG
TCTCGGGACTACGGCAAGCACAATATGGGTGAGTACGTATGTACAGTGCT
TCGTGCAGTAGTGCAGTACAGTGAGCACGTACTGTACAGTGCTTGGAAGC
GTGTGCCCACGGCATGCTTGCCGTGGCCCTGAGACCATTGGTCGAGCACG
CGTGCGGCGCAGAGTTTGCTGTGCGATTTGCTTTCCACTGTTGTTGCCTG
GCTGCTCCCCTCTCCCAGGTGGTACAACTCCACCTCCCCTGCCCCCGCCA
GCGCCCCTCCCCCGGGGGCCCAGTGATGGAATATCTAGGCGAATCAACCG
ATTTATGGACAGTACTGATCTGTATATCTATCGATGGTCGATGTTCGACA
GTTTGACCCACACTAAGTCCAACTACCGTAGATACAGTAGTAGCGCCACC
CTCAAAATCAGTCAAGCCCGATAGCTATCTACTGATCGATATTCCATCAC
TGCTTGGGCCCGCTTCGGTCATTTGGTCCTCGCGAACGCTCTTACTTGCC
TAGAGGCCAAGAAGCTCATGTCCACACACCCCGCTCCGGCGTGACCCCCC
CCCGCAATAAGACGTAAAAATGTTAACCCTTTTGCCCAGGGTAAATTGGA
CTTGCACACTAAAACCCTATGATTGTACGGACCCCTGGGGCAAAAGGGCT
AATTCTCAGATGACGGCGGGACATTCATCCCACAGTGAACAGAGGGTCAT
GTATGTACTTCGAAGTATGTACTCGTACAGCTTACCCCCCGCGCCCCACC
CCTGCATACCTTTGCCCTCTTTGGCCCTTATGCTCTCCTCGTCTACGTTG
TATCGTCTGGGCAGCCGGCCTGCGGGACGTGGAAGAAGCACTCAAGGCCC
TGAGGCCACCGGCGGCAAATGCCTCACCGGAAACCCAGCAAGGCCGGGGG
GGGCGGGTCACCCTTCCCGGGTGGCTGCGAGCCGTGAGAGCGGTGTGCGT
GCCTCACAGGTGAGGACTGGGCTGTACAGATGCAGGGTGCTGCGGCGCTG
TGCCTGCTCTGTCTCGGTCGAGGCGCATGGTCAATGGTCTCGGGACTATG
GCAAGCACAACGCGAGTACACACACTAGAAGCACGTATGTAAGTACATGT
ACGCAACGGTGCTGTACAGTATACTACGGTACCCGTACTCTACCACCCTG
TTGTAAGTACTTGGAAACACACTTCCCAAGTGCGCCCCAAGTACTGTGCT
GTGTTGTCAAGAGAATGTACTCCAAGTACGTGAAGTACGATACTACCGAC
GGGGTTTCAAATTGTGTGCTATACGTGCTAGTCAAAATACTCGCAGTGTG
CTTGCTGTGGCCCACAGGCCATTGACCACAGGCCCTCTTTTGAGTCGGCA
GCCGCTGTGGAGGTCACATTTCTCCGTCCTCCATCTCCTCCTCCTCCTCC
CCATCCCCCGTGCCTCGTCCTACCCCTCCTCCTGCTCGTCCCCGTCCCAC
TGCCCCTCCTCCTCACACCGCCCTCCCCTTCTCTTTCCTCTCCACCTCCA
CCTCGCCCTCCTCCCCTTCCCTTCCCACTCCCCCTCCTCCCCCGCCACCC
CTCCCCCATATCCTCTTCCTCTTCCTCCTcCCCCCCCCCGCCCCTTCCCT
TCACACCATCATCCAACCCCCCCCCCGCCTTGCCCCCCGCGCCGGCATCG
CCATACCAGGGTGGCGGTGCCTGGTCAGCCTACCCCTGCCTCACACCCTG
GCCCCCAGGGGAACCCTCCCAAGGGGCCCCACTCCTGGCTGAGGGTAGAG
CGTGCTTGCCTATCCCGTCCGGGCCTGGTGTTTCGCTACCTGGGTGCGAC
ACTCTTCCCTCTGCCCCTCCCCTCCCCCGCCGTTCTGGCCCCGGACCGCG
GCGCTGAGGCC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2899701..2902511+

>mRNA_S-ischiensis_contig11.2317.1 ID=mRNA_S-ischiensis_contig11.2317.1|Name=mRNA_S-ischiensis_contig11.2317.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1182bp|location=Sequence derived from alignment at S-ischiensis_contig11:2899701..2902511+ (Schizocladia ischiensis KU_0333)
AGTGGTGGTGGTGGTGGCAGCTCTGATGTGGGGGCGACACTCTGCGGCCC
TTGGCCGCCGCTTGACCCACAAGGAACAGAGGCGGCCTCCGCCGCTGCGG
CGCGGGGCGCTGACCGCGGGCTCCATCCACCACGTCCGTCAGCCATCGCC
TGCGAGGGGTCAACAAGCGATGACAGCTGTAGCCTGACGGAGACCCCCCT
GCCGGCTGGCGTGCTTGTGTGGAGGAGGGGGTCCCCAGCCACAGAGTGGT
GGTGGTGGTGGCAGCTCTGATGTGGGGGCGACACTCTGCGGCCCTTGGCC
GCCGCTTGACCCACAAGGAACAGAGGCGGCCTCCGCCGCTGCGGCGCGGG
GCGCTGACCGCGGGCTCCATCCACCACGTCCGTCAGCCATCGCCTGCGAG
GGGTCAACAAGCGATGACAGCTGTAGCCTGACGGAGACCCCCCTGCCGGC
TGGCGTGCTTGTGTGGAGGAGGGGGTCCCCAGCCACAGCCGGCCTGCGGG
ACGTGGAAGAAGCACTCAAGGCCCTGAGGCCACCGGCGGCAAATGCCTCA
CCGGAAACCCAGCAAGGCCGGGGGGGGCGGGTCACCCTTCCCGGGTGGCT
GCGAGCCGTGAGAGCGGTGTGCGTGCCTCACAGCCGGCCTGCGGGACGTG
GAAGAAGCACTCAAGGCCCTGAGGCCACCGGCGGCAAATGCCTCACCGGA
AACCCAGCAAGGCCGGGGGGGGCGGGTCACCCTTCCCGGGTGGCTGCGAG
CCGTGAGAGCGGTGTGCGTGCCTCACAGGGTGGCGGTGCCTGGTCAGCCT
ACCCCTGCCTCACACCCTGGCCCCCAGGGGAACCCTCCCAAGGGGCCCCA
CTCCTGGCTGAGGGTAGAGCGTGCTTGCCTATCCCGTCCGGGCCTGGTGT
TTCGCTACCTGGGTGCGACACTCTTCCCTCTGCCCCTCCCCTCCCCCGCC
GTTCTGGCCCCGGACCGCGGCGCTGAGGCCGGTGGCGGTGCCTGGTCAGC
CTACCCCTGCCTCACACCCTGGCCCCCAGGGGAACCCTCCCAAGGGGCCC
CACTCCTGGCTGAGGGTAGAGCGTGCTTGCCTATCCCGTCCGGGCCTGGT
GTTTCGCTACCTGGGTGCGACACTCTTCCCTCTGCCCCTCCCCTCCCCCG
CCGTTCTGGCCCCGGACCGCGGCGCTGAGGCC
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