mRNA_S-ischiensis_contig11.2297.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2297.1
Unique NamemRNA_S-ischiensis_contig11.2297.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2297.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2650254..2652662 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size433
Cds size432
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2297.1prot_S-ischiensis_contig11.2297.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2650254..2652662 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.8624058-CDS-S-ischiensis_contig11:2650253..26505201622815579.8624058-CDS-S-ischiensis_contig11:2650253..2650520Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2650254..2650520 -
1695739782.8262658-CDS-S-ischiensis_contig11:2650253..26505201695739782.8262658-CDS-S-ischiensis_contig11:2650253..2650520Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2650254..2650520 -
1622815579.8744392-CDS-S-ischiensis_contig11:2651777..26518701622815579.8744392-CDS-S-ischiensis_contig11:2651777..2651870Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2651778..2651870 -
1695739782.8347476-CDS-S-ischiensis_contig11:2651777..26518701695739782.8347476-CDS-S-ischiensis_contig11:2651777..2651870Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2651778..2651870 -
1622815579.8866522-CDS-S-ischiensis_contig11:2652590..26526621622815579.8866522-CDS-S-ischiensis_contig11:2652590..2652662Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2652591..2652662 -
1695739782.8430007-CDS-S-ischiensis_contig11:2652590..26526621695739782.8430007-CDS-S-ischiensis_contig11:2652590..2652662Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2652591..2652662 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2297.1

>prot_S-ischiensis_contig11.2297.1 ID=prot_S-ischiensis_contig11.2297.1|Name=mRNA_S-ischiensis_contig11.2297.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=144bp
MARREGRAGKGRRARQGQDSYEFEDEAAAREQRAQYDSDAGGSADEANPE
DPDFEDEEIDEDEAFDSGDEDKFGEVMNAIAARQRKRGVGKHGDDSEGSS
SEGGSGGEEEDSDDDDDEGEGGVSVMDMLDGKMSGGGETPAQGR
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mRNA from alignment at S-ischiensis_contig11:2650254..2652662-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2297.1 ID=mRNA_S-ischiensis_contig11.2297.1|Name=mRNA_S-ischiensis_contig11.2297.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2409bp|location=Sequence derived from alignment at S-ischiensis_contig11:2650254..2652662- (Schizocladia ischiensis KU_0333)
ATGGCCAGGAGGGAGGGCCGGGCGGGCAAAGGCCGAAGAGCTAGGCAAGG
CCAGGACTCGTACGAGTTTGAGGTGAGGATGGATTTTCGTTGGCTACGCT
GAGTCCCTTGATCGCTCGCGTGGGTCTCCCCACCGCCGCCAACCACCACT
ATTGTGCCTCTGAGACAACCCCTCTGCAGTTGCACCGCTTCCCTTGGTTC
GGGAGACCGGTGGACGTCTTTCTTGGGGTTCAAAAACGCTTCTTGCCCCG
TCCTGTGAGGGATACCTGTGGGTTTTGTGACACCGAAAGCACATTCCCGA
CCCCGCCGAGGAACCTCTTCACCGTGTCGCTGGTGCCAGTGTTCCGTACT
TCCAAGTACGTTTGACGTACGAGTAAGCCTGAAGGGCGCGCTAGCATTGC
TTCTGTTTGTGTACCCGGATGCATACCTGTACTGTACTCGCACTGCGCTG
GCCGTAGGGTGCCAGAGGCCATTGACACACACCCCTTCCGACTTCCAAGC
GCCAGGTACAGTACAAGCACTCACAAGGTGCCAGTGCAGCACTACAATGG
CCACTGTACTTGCACTTGCAGCCGGCCAGTGGCGAGGGCGCACCGTTCAT
CTAGAATATGCGTGAACGAGTACACTCACCAAACCCAAACACACACCCAC
GCACTGAACTGCGTATGGTGACCCATGCATCTTCCCAAGTACCCTGAGCC
GCGCTCACATGTGATGCCGGGGCCTTGCAACTGCGTTGCTCACGCGACCG
GGCCGCCTCCGCTCTTATTGCACCTGTTGTATTGTACCCCAGGATGAGGC
CGCTGCACGGGAGCAGCGGGCACAGTACGATTCGGACGCGGGTGGCAGCG
CGGACGAGGCCAACCCCGAGGACCCCGACTTCGAGGTGTGTACAATTGTA
CTTCGAAGTACTTGCTACGCAGCTGTAGGGCTAGGGCTGTTGCCGTGGGG
AATGCGGCTGCACAGCTGCTGTGTACGAGTACACTATGTTGCTACAGACG
TGGTACAGCCCAGTAGTGGGTACTGCAGCTGCAGGGCTTAGAGCTGTTGC
CGTTGGGACTGCGACTGCACAGCCGCGGTGCGAGTACACTATGTATATAG
CTGCAGAAGTGGTACAGCGCCTGTGTAACTGCTGCCCAGCTGTAGGGCTA
GAGCTGTTAACGTTGGGACTGCGACTGCACAGCCGCGGTACGAGTACAGT
ACATAGCTGCAGACATGGTACAGCGCAGTAGTAGGTAGCTGTAGGGCTAG
AGGTGTTGCCGTTGGGACTGCGACTGCGCGACCGCGGAACGAGTGTATTA
TATACCCGCAGAAGTGGTACAGCCCAGGAAGTAGTAGGTACTGCAGCTGT
AGGGCAGAGCTGTTGCCGTTGGGGCTGCGACTGCACAGCCGCGGTACGAC
ACCACTACAGTATATAGCTGCGGAAGTGGCGCAGTGGTAGGTTCTGCTTA
TGTCGTAGAGGTATTGTACTGTACTTGCTGCCCTGATGAATGAGTACGAG
AGCTGAAGTGCGGTTGCCACGCAGTATTGTACTTGGGGAGCATGTGCTTG
TGGGTCCGGTCTTGCAGGGGTGTTGCGCGTGGCTGCAACCGCACAGCCTC
GGCGCGGCGCTTTCAAAGCTTGTCGATCGATCGCCGCGTTGTGGTTGGCA
GCCCCTGTAGCATTGGCCACACACCCTCTGCTGGGTTGAGAGCACTACTT
AGATCTCGAGTATGCGCTGTGCACTACTGTAGGAATACAGTAGAGAATGT
GTGAGAGAGGTGTACCAGTGCTGTAGATCAGTAGTTTTGTGTGGCCCAAC
CGTGCCTGATATAGGCCTCGTGCGAGGCCTATATACCCAGTGCCATACAG
GCACAGTCACGTCCAGTGATTTCCAGCACTTGTTCAAGTACAACATGTGT
AGGTACCCAAGCGCTCCTACAAGCTGTAAAACCCTTGTTCCAAGTACATG
CACTACGAGGAACCTTGTTCCTCTGTTGCCCCGAACACACATGCACACAC
ACACACGTGCGCGCGCGCGGCGCACGCCGGGCTGGCTCCCCGCCACGTGC
CCTTGTCGTGATTCATATAAATTGTAACGAGGCACAGTCGCACGTGTGTG
AGATTGACTGTTCTCGCCGTGCCGTTGCCGTGCCGTGCTCAGGACGAGGA
GATTGACGAGGACGAAGCCTTTGACAGCGGAGACGAGGACAAGTTTGGCG
AAGTCATGAACGCCATTGCCGCCAGGCAACGTAAGCGTGGAGTGGGCAAG
CACGGTGACGACAGCGAAGGCTCCAGTTCGGAGGGTGGCTCTGGCGGGGA
GGAGGAGGATAGCGACGATGACGACGACGAGGGGGAGGGAGGCGTGTCCG
TTATGGACATGCTGGATGGGAAGATGTCGGGCGGCGGGGAAACGCCTGCG
CAGGGCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2650254..2652662-

>mRNA_S-ischiensis_contig11.2297.1 ID=mRNA_S-ischiensis_contig11.2297.1|Name=mRNA_S-ischiensis_contig11.2297.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=864bp|location=Sequence derived from alignment at S-ischiensis_contig11:2650254..2652662- (Schizocladia ischiensis KU_0333)
ATGGCCAGGAGGGAGGGCCGGGCGGGCAAAGGCCGAAGAGCTAGGCAAGG
CCAGGACTCGTACGAGTTTGAGATGGCCAGGAGGGAGGGCCGGGCGGGCA
AAGGCCGAAGAGCTAGGCAAGGCCAGGACTCGTACGAGTTTGAGGATGAG
GCCGCTGCACGGGAGCAGCGGGCACAGTACGATTCGGACGCGGGTGGCAG
CGCGGACGAGGCCAACCCCGAGGACCCCGACTTCGAGGATGAGGCCGCTG
CACGGGAGCAGCGGGCACAGTACGATTCGGACGCGGGTGGCAGCGCGGAC
GAGGCCAACCCCGAGGACCCCGACTTCGAGGACGAGGAGATTGACGAGGA
CGAAGCCTTTGACAGCGGAGACGAGGACAAGTTTGGCGAAGTCATGAACG
CCATTGCCGCCAGGCAACGTAAGCGTGGAGTGGGCAAGCACGGTGACGAC
AGCGAAGGCTCCAGTTCGGAGGGTGGCTCTGGCGGGGAGGAGGAGGATAG
CGACGATGACGACGACGAGGGGGAGGGAGGCGTGTCCGTTATGGACATGC
TGGATGGGAAGATGTCGGGCGGCGGGGAAACGCCTGCGCAGGGCCGGGAC
GAGGAGATTGACGAGGACGAAGCCTTTGACAGCGGAGACGAGGACAAGTT
TGGCGAAGTCATGAACGCCATTGCCGCCAGGCAACGTAAGCGTGGAGTGG
GCAAGCACGGTGACGACAGCGAAGGCTCCAGTTCGGAGGGTGGCTCTGGC
GGGGAGGAGGAGGATAGCGACGATGACGACGACGAGGGGGAGGGAGGCGT
GTCCGTTATGGACATGCTGGATGGGAAGATGTCGGGCGGCGGGGAAACGC
CTGCGCAGGGCCGG
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