|
|
Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 3 |
| Model size | 722 |
| Cds size | 633 |
| Stop | 1 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815579.5671997-CDS-S-ischiensis_contig11:2537657..2537768 | 1622815579.5671997-CDS-S-ischiensis_contig11:2537657..2537768 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 2537658..2537768 + |
| 1695739782.6871526-CDS-S-ischiensis_contig11:2537657..2537768 | 1695739782.6871526-CDS-S-ischiensis_contig11:2537657..2537768 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 2537658..2537768 + |
| 1622815579.5807579-CDS-S-ischiensis_contig11:2538309..2538831 | 1622815579.5807579-CDS-S-ischiensis_contig11:2538309..2538831 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 2538310..2538831 + |
| 1695739782.6962795-CDS-S-ischiensis_contig11:2538309..2538831 | 1695739782.6962795-CDS-S-ischiensis_contig11:2538309..2538831 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 2538310..2538831 + |
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815579.592275-UTR-S-ischiensis_contig11:2538831..2538854 | 1622815579.592275-UTR-S-ischiensis_contig11:2538831..2538854 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 2538832..2538854 + |
| 1695739782.7049587-UTR-S-ischiensis_contig11:2538831..2538854 | 1695739782.7049587-UTR-S-ischiensis_contig11:2538831..2538854 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 2538832..2538854 + |
| 1622815579.6039991-UTR-S-ischiensis_contig11:2539510..2539574 | 1622815579.6039991-UTR-S-ischiensis_contig11:2539510..2539574 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 2539511..2539574 + |
| 1695739782.7156901-UTR-S-ischiensis_contig11:2539510..2539574 | 1695739782.7156901-UTR-S-ischiensis_contig11:2539510..2539574 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 2539511..2539574 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2287.1 >prot_S-ischiensis_contig11.2287.1 ID=prot_S-ischiensis_contig11.2287.1|Name=mRNA_S-ischiensis_contig11.2287.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=211bp
RRGAVPLGASSAQAATPVIDLCVLEPSADLDTAIAPQRSETPGTPSECGG
QRPSPAAALAQTRVPPAKRATTAAQTAAVAAAAAASPGVHGKACPGVGLG
MAEETATVAAPAPLGSGGRCLSRWDTCWAVAMEELNLPGERVADGGRPGR
GLVVTAVAVVATTTKYEVEVPQIRFLLLGRQYCLFKYRASHGKRCGPCCI
SAIVSTGPQG* back to topmRNA from alignment at S-ischiensis_contig11:2537658..2539574+ Legend: polypeptideCDSUTR Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig11.2287.1 ID=mRNA_S-ischiensis_contig11.2287.1|Name=mRNA_S-ischiensis_contig11.2287.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1917bp|location=Sequence derived from alignment at S-ischiensis_contig11:2537658..2539574+ (Schizocladia ischiensis KU_0333)
CGGAGGGGCGCAGTGCCTTTGGGGGCCAGCTCAGCCCAGGCCGCCACGCC
AGTGATCGACCTGTGCGTCCTAGAGCCATCCGCCGACCTGGATACAGCTA
TTGCCCCCCAGGTGTGTGAGAGTGCATGTGTGTGTGTGTGTGTGTGTGTG
TGTGTGTGCTTGCGCATGTGTGTGTGTGTGTGTGTGTGCGTGGGAGTGTG
GGCGTGCGCGCGTGTTTATATGCGACGTTGGTTTTTACGTAGAGTACTCA
AGAGTACGAGTACAAGTCTTCTTCCAAGTGAGTACAGTAGGTAGGTTTAC
ATTACACTGCACAGTAGAGCAGAGTTACTGTCCTTCGAACTACTGTAACT
TCGAGCTGGCTTCCTTTCTTTGAGTAGGTACTGTGTTGGTAGTTTGGTCC
TTCGAACTACAGTAACTCTACTGCAGTAGTTTGGCCCCGCACCTCGCCCC
ATGTTGTTCCCGATGATACTGTAGCTTCGAAGTTAGTGTCACGGTGTTGT
GCGTCCCTTGCCGGAAACCGCGCTCAAGCGACTGTACCTGCAATGGTGCC
CCGCTCTGCCCGCCCGCGCTCACACACACGCACACACACACACACACATG
CACACACATACACACGTCTGCGCCCATGCATGCCGTCCCCCCGCCACCAC
AGAGGAGCGAAACACCTGGGACCCCGAGCGAATGCGGTGGACAAAGGCCA
AGCCCCGCTGCGGCGCTAGCCCAAACACGGGTGCCACCAGCCAAGCGAGC
AACCACCGCTGCGCAAACGGCAGCGGTGGCAGCAGCAGCGGCAGCCTCGC
CGGGCGTTCATGGAAAAGCCTGCCCAGGCGTGGGCCTTGGCATGGCGGAG
GAGACAGCAACGGTGGCAGCGCCGGCACCGCTGGGCTCCGGCGGCCGGTG
TCTGAGCCGCTGGGACACGTGCTGGGCGGTTGCCATGGAGGAGTTGAACC
TCCCAGGGGAGCGAGTCGCCGACGGCGGCCGCCCGGGCCGCGGATTGGTG
GTGACGGCGGTGGCAGTGGTGGCTACTACTACTAAGTACGAAGTAGAAGT
TCCGCAGATTCGTTTTTTACTACTCGGTCGTCAGTACTGCTTGTTCAAGT
ACCGAGCTTCTCATGGCAAGCGCTGTGGGCCTTGTTGTATTTCTGCCATA
GTCAGCACAGGCCCCCAAGGTTGAGCACTGCACAAGTGCAGGACATTGCC
GACGCTGGTGTCGGTGACATGAGCGCACCCTTGTAGTGAGCGAGTTGCCG
TTGGTGATGCGTTCCGGCCCGGCGCCATCCTCCACCACTTTGACCTGCAG
CTCAATGATGCGGATGTCTTCACGCTCTGCTGGTCAAGCACCTTGATGCC
GTTCACACAGTCAGGCGACACGAAGCACTCGCCAACACGCTCCACCTAAC
CTAGATGCACGGGCATCCATTTCACCAACAACTGGCTGAGGCAGGACGTT
GACATGCCAAGGGACATGTGGGAGCTACAGGGAGAAGCACGCCAAGTGGA
CGGCCAGCTGAGTGTGGTGACCACCGTGCAGCGCCACAGCGCCACAGTGC
ACAGTGGTCACCACACTCAGCTGGCCGTCCACTTGGCGTGCTTCTCCCTG
CAGCTCCCACATGTCCCTTGGCATGTCAACGTCCTGCCTCAGCCAGTTGT
TGGTGAATTGCACGCCCGTGCAGATGCTAGGTGGAGCGTGTTGGTGAGTG
CTCCATGTCGCCTGACTGTGTGAACGGCATCAAGGTGCTTGACCAGCAGA
GCGGGTCTACTTCCGCATCACTGACCAGCAGGTCAAAGTGGCGGAGGATA
GCACCGGGCCAGAAAGCGTCACGTCACCAACGGCGCCCTCGCTCACTACA
AAGGATGCGCTCATGTCATTGACATAAGCATCGGCAATGTCCTGCAGTTG
CATGGACGGGACCACGG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig11:2537658..2539574+ >mRNA_S-ischiensis_contig11.2287.1 ID=mRNA_S-ischiensis_contig11.2287.1|Name=mRNA_S-ischiensis_contig11.2287.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1266bp|location=Sequence derived from alignment at S-ischiensis_contig11:2537658..2539574+ (Schizocladia ischiensis KU_0333)
CGGAGGGGCGCAGTGCCTTTGGGGGCCAGCTCAGCCCAGGCCGCCACGCC
AGTGATCGACCTGTGCGTCCTAGAGCCATCCGCCGACCTGGATACAGCTA
TTGCCCCCCAGCGGAGGGGCGCAGTGCCTTTGGGGGCCAGCTCAGCCCAG
GCCGCCACGCCAGTGATCGACCTGTGCGTCCTAGAGCCATCCGCCGACCT
GGATACAGCTATTGCCCCCCAGAGGAGCGAAACACCTGGGACCCCGAGCG
AATGCGGTGGACAAAGGCCAAGCCCCGCTGCGGCGCTAGCCCAAACACGG
GTGCCACCAGCCAAGCGAGCAACCACCGCTGCGCAAACGGCAGCGGTGGC
AGCAGCAGCGGCAGCCTCGCCGGGCGTTCATGGAAAAGCCTGCCCAGGCG
TGGGCCTTGGCATGGCGGAGGAGACAGCAACGGTGGCAGCGCCGGCACCG
CTGGGCTCCGGCGGCCGGTGTCTGAGCCGCTGGGACACGTGCTGGGCGGT
TGCCATGGAGGAGTTGAACCTCCCAGGGGAGCGAGTCGCCGACGGCGGCC
GCCCGGGCCGCGGATTGGTGGTGACGGCGGTGGCAGTGGTGGCTACTACT
ACTAAGTACGAAGTAGAAGTTCCGCAGATTCGTTTTTTACTACTCGGTCG
TCAGTACTGCTTGTTCAAGTACCGAGCTTCTCATGGCAAGCGCTGTGGGC
CTTGTTGTATTTCTGCCATAGTCAGCACAGGCCCCCAAGGTTGAAGGAGC
GAAACACCTGGGACCCCGAGCGAATGCGGTGGACAAAGGCCAAGCCCCGC
TGCGGCGCTAGCCCAAACACGGGTGCCACCAGCCAAGCGAGCAACCACCG
CTGCGCAAACGGCAGCGGTGGCAGCAGCAGCGGCAGCCTCGCCGGGCGTT
CATGGAAAAGCCTGCCCAGGCGTGGGCCTTGGCATGGCGGAGGAGACAGC
AACGGTGGCAGCGCCGGCACCGCTGGGCTCCGGCGGCCGGTGTCTGAGCC
GCTGGGACACGTGCTGGGCGGTTGCCATGGAGGAGTTGAACCTCCCAGGG
GAGCGAGTCGCCGACGGCGGCCGCCCGGGCCGCGGATTGGTGGTGACGGC
GGTGGCAGTGGTGGCTACTACTACTAAGTACGAAGTAGAAGTTCCGCAGA
TTCGTTTTTTACTACTCGGTCGTCAGTACTGCTTGTTCAAGTACCGAGCT
TCTCATGGCAAGCGCTGTGGGCCTTGTTGTATTTCTGCCATAGTCAGCAC
AGGCCCCCAAGGTTGA back to top
|