mRNA_S-ischiensis_contig11.2286.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2286.1
Unique NamemRNA_S-ischiensis_contig11.2286.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2286.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2533071..2536396 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Ec32 ortholog descriptionhypothetical protein
Ec32 orthologEc-12_002370.1
Hectar predicted targeting categoryother localisation
Exons4
Model size680
Cds size678
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2286.1prot_S-ischiensis_contig11.2286.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2533071..2536394 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815579.4884293-CDS-S-ischiensis_contig11:2533070..25331291622815579.4884293-CDS-S-ischiensis_contig11:2533070..2533129Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2533071..2533129 +
1695739782.6427038-CDS-S-ischiensis_contig11:2533070..25331291695739782.6427038-CDS-S-ischiensis_contig11:2533070..2533129Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2533071..2533129 +
1622815579.5034528-CDS-S-ischiensis_contig11:2533666..25338911622815579.5034528-CDS-S-ischiensis_contig11:2533666..2533891Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2533667..2533891 +
1695739782.6556804-CDS-S-ischiensis_contig11:2533666..25338911695739782.6556804-CDS-S-ischiensis_contig11:2533666..2533891Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2533667..2533891 +
1622815579.520346-CDS-S-ischiensis_contig11:2534587..25347741622815579.520346-CDS-S-ischiensis_contig11:2534587..2534774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2534588..2534774 +
1695739782.6663659-CDS-S-ischiensis_contig11:2534587..25347741695739782.6663659-CDS-S-ischiensis_contig11:2534587..2534774Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2534588..2534774 +
1622815579.5306222-CDS-S-ischiensis_contig11:2536187..25363941622815579.5306222-CDS-S-ischiensis_contig11:2536187..2536394Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2536188..2536394 +
1695739782.6769636-CDS-S-ischiensis_contig11:2536187..25363941695739782.6769636-CDS-S-ischiensis_contig11:2536187..2536394Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2536188..2536394 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2286.1

>prot_S-ischiensis_contig11.2286.1 ID=prot_S-ischiensis_contig11.2286.1|Name=mRNA_S-ischiensis_contig11.2286.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=226bp
AAAAEASWVVDRRRGAGRAGALARSPWGPGRPRSGAAAAAGDAAQFHTLS
PSPAYSGGEAAPTGSGSPPPGRPPWEGEERGEGRWWPASTDLYRSRALMT
LAVAGRTSMEERFDIQCAANGFSGRPPPSYTDYPPTSGLRSPGASRRGRP
ASAGARMPTAPRGGRPRGNFPPSSSSFLSLLSEPSPPRARGGQQPRPASA
PAGGSAVAADAFQGTPPGPGDNRAFS
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mRNA from alignment at S-ischiensis_contig11:2533071..2536396+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2286.1 ID=mRNA_S-ischiensis_contig11.2286.1|Name=mRNA_S-ischiensis_contig11.2286.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3326bp|location=Sequence derived from alignment at S-ischiensis_contig11:2533071..2536396+ (Schizocladia ischiensis KU_0333)
GCGGCGGCGGCGGAGGCTTCGTGGGTTGTGGACCGGCGGAGAGGGGCCGG
CAGAGCTGGGTGGGTGTTGTGGGTGTTGGGGGGGTTGGGGGCTGTGAAGA
GGGGTGGCGAAGTGGTGGTGGTGTTATGGGTTGTTTTCGATTGCTTTTGA
GTTCCGGGCCCTGTCCCAGAGTTGGGACCTCACTAGAAAGAAGCCCCTTC
TTTCCCTCGCTTGTGATATGTGGTGTGATGTGCTGTGTACTACAGTAACC
CTAACCCTAACTCATGCTTTGGAAGTGCTTTGAAGTACTTTGAAGTACTA
TGGATGTGTGCCGCCAGCCAGCCCAAGCCACGGCCTGCACTGCACCGCGG
CAACGCCCAAAGCCCCTCACTCGGGGCCCTCACTGCCCAGACCCAGCAAC
CAACACCGCCTCCTACTTACCTCACTTCGCATGCACTCGAACGCCGTGGC
CGTGAACGCCTCACCCCCAACACCCCCGAGAACACTCCATTCTTAAATGG
GACAACTACTGATACGAGAACACTCAATCTCACGCATGTGCATTGTACCT
CAGTACAATTTATATGAATCACCCCCCGCCCGTCCACCCCCCCCAGCGCC
CTCGCCCGCAGCCCGTGGGGCCCAGGCCGACCACGCTCCGGGGCGGCAGC
AGCGGCAGGCGATGCAGCACAGTTCCATACCTTGTCGCCCTCTCCCGCGT
ACAGTGGGGGCGAAGCCGCCCCCACCGGGTCGGGCTCGCCGCCGCCCGGC
CGCCCACCCTGGGAGGGGGAGGAGAGGGGCGAGGGTCGCTGGTGGCCAGC
GTCCACGGACTTGTACCGGAGGTGAGGCTGGGGAAGGTGTGGGTGGTGGT
GGTGGTGGTGGTGGTGGTCGCCGGCGTCCACAGACTTGTACCGGAGGTGA
GGAGGCAGGGGCAGGTGGGGGCCGGGCCGGCGACTGGAATAGTCTGTGTG
CGATTTTTGTTCCCGGACCCCCGGGGTCGTGTTTGCCCCCGGTCCGGTCC
GGCCCTGCGAATGCCGCTGGTGGTGGCAGCTATCGGTTCTCTCCTCGCCC
TCGATCTACTTACATCCGTCCGTGCCGCCGTCCTTCCCTCCTTCCCTACT
TTAAACCCTCTCCTCCTCCTTCTGCCCCTCCCTCCTCTCTTCCTCTCCTG
ACAACCCTCTCCATCCCTCGCACTCACTCCCCCGCCGGGCCAATCTGCCC
CGCCCGCCCTGGTCCCATCAACCCACCATCGCCTGCACAAAACCTGCCCA
CCCTGCCCCTGCCCGGCGCTCACGGAACATATGCCGACGGACATGTGTCT
CTGTTCTCCCCCCCTCTCTCTCTCATCTCTGTCGCTCTCTCTTTCCACCG
TCTCGTGCTCTGTTTCCTGCTCTCTGTCCCCCCCCCCTCCCCTCTCTCTC
GTATCTGTCGCTCTCTCTTTCCATCCCTCTCGTGCTCGCTTCCTCTCCCT
CCCCCTCTCCCTCTCTCCTCTCCCTCGcccccCCCCCCGTCGCCCCCCGC
GCCCCCACACCCCTCAGCCGGGCGTTGATGACTCTGGCCGTGGCGGGAAG
AACCTCCATGGAGGAGCGTTTTGACATCCAGTGCGCCGCCAATGGTTTCT
CGGGGCGCCCGCCGCCCTCCTACACTGACTACCCGCCTACAAGCGGTCTG
AGAAGCCCAGGCGCATCCAGACGGGGCCGCCCGGCATCGGCAGGCGCGAG
GATGGTGAGGTGTACTCGAGCACAGTGCTCTTGCATGTGTGCAGTGTGTG
TCTGTGCTACAGTAGTACTCGTGCCGGGGGTTGTGCGCGCGCATGTGTGT
ATGTGTGTGTGTGTGTGTGTGTGTGGCATGTATGTGCGTGCGTAAGTAGT
GCTTGTGTGTATTCCAGTGCCCGTACTTGGAAGTGCTTCCAGAAGTAGGT
AGTAGTGTATGTAGAGTAAGTACTCTCACATGCCCGTCCCGGCTTAGTAG
GGACGCGACGGTCGATGGCCGCCGAAGTGCTGTGACTATGCACGGCGTGC
GGAGGAGTTCAGACGATTGACAGTACGTGAATCACTAGTCCATATATCAA
GTACGTGAGGAGATTGGCGTTCAATCACCAAGTAGTTGAGGATATTGGCT
TTCAATCACCAAGTAGTTTGGGAGATGACTGTGCACAGCGTGCGGAAAGA
CAATGTACAGTACTTGTATCATGTGCACAAACTCTGTAGAGTACGAGTTA
ACTATTTTGCCCCTGGGGTCCGTATAACCATAGGCTTTTAGTGTCCAAGT
CCAATTTAGCAGGGTTAAAAGGGTTAACGTACGTGCACGTGACATTGGGA
TTGATGGTTGCCTTCTCCCGGAGACCGCTAACGGCGTGCCCATGCCGAGA
ATGGGGCCGGTTGGTGCATACTACTGTACAGTACTCGTACACACTTGGAA
GTGCTAATAAATACTTGCACAGTGCAGAGCCCTATTTTGGTGGTAGACAA
GCGGCGAGTTCCAGGCCCCGTGCCAAAAGGCTCGTCCCAAAACAGGACTC
AACGGAAGCCCTTCCTTCCCTGGCAGGGCCAGAAGAAGAGCACTAAAGTG
GACTGGAGTTCTTGCTCTACAAGCAAACGAAGTGATGCAGTGGTGGGTGT
TCACGCGTTTATCAGTACAGTACAGCGCTGCAGGGTTTCACCCTTCCGAG
CGTGTCGGTGTGTGCTCTGCGCCCCCGACGGGCAAAGGCACACACCATCT
CGAGGAAGAAGGGTCTTGCTTCGTATGACCCTTAAGGTTCTCGTCTCATC
TCATCTCATCTCGTTTCGCGTCCCATTCTGGATGTGGTGCGAACGAAGCT
TGCGGCGTTTCCTCCTACAGTACATCCCCCCCCCCCCTGTGACGACCAAG
AACCAGACAGATTGGCCGTACAGTAGCCAGCTACTAGTAGTAGCAGCCTC
TCCAACGACAAGGAAAACGGACCCCGCCACCCCCGTCCCGAAAAATATAC
AAAAATGTACTGACTCACGTTGTGCTTGCCGTAGTCCTGAGACCATTGAC
CACGCGCCTCGATCGAGACGGAGCAGATATTCATACTTCGTACTTCGAAG
TAATACATAAATAACAACTGCACTGCGCGCTGCACCACCCCCCCACACAC
ACAACTGCTGGCAGCAGCCCACCGCCCCCCGTGGTGGCCGGCCCCGCGGG
AACTTCCCGCCCTCCTCCTCCTCCTTCCTCTCCCTCCTCTCCGAGCCGTC
CCCGCCGCGGGCGCGGGGGGGGCAGCAGCCGAGGCCGGCCTCCGCGCCTG
CCGGGGGGTCCGCCGTAGCCGCGGACGCCTTCCAAGGAACACCCCCGGGG
CCCGGAGACAACCGGGCCTTCTCCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2533071..2536396+

>mRNA_S-ischiensis_contig11.2286.1 ID=mRNA_S-ischiensis_contig11.2286.1|Name=mRNA_S-ischiensis_contig11.2286.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1356bp|location=Sequence derived from alignment at S-ischiensis_contig11:2533071..2536396+ (Schizocladia ischiensis KU_0333)
GCGGCGGCGGCGGAGGCTTCGTGGGTTGTGGACCGGCGGAGAGGGGCCGG
CAGAGCTGGGCGGCGGCGGCGGAGGCTTCGTGGGTTGTGGACCGGCGGAG
AGGGGCCGGCAGAGCTGGCGCCCTCGCCCGCAGCCCGTGGGGCCCAGGCC
GACCACGCTCCGGGGCGGCAGCAGCGGCAGGCGATGCAGCACAGTTCCAT
ACCTTGTCGCCCTCTCCCGCGTACAGTGGGGGCGAAGCCGCCCCCACCGG
GTCGGGCTCGCCGCCGCCCGGCCGCCCACCCTGGGAGGGGGAGGAGAGGG
GCGAGGGTCGCTGGTGGCCAGCGTCCACGGACTTGTACCGGAGCGCCCTC
GCCCGCAGCCCGTGGGGCCCAGGCCGACCACGCTCCGGGGCGGCAGCAGC
GGCAGGCGATGCAGCACAGTTCCATACCTTGTCGCCCTCTCCCGCGTACA
GTGGGGGCGAAGCCGCCCCCACCGGGTCGGGCTCGCCGCCGCCCGGCCGC
CCACCCTGGGAGGGGGAGGAGAGGGGCGAGGGTCGCTGGTGGCCAGCGTC
CACGGACTTGTACCGGAGCCGGGCGTTGATGACTCTGGCCGTGGCGGGAA
GAACCTCCATGGAGGAGCGTTTTGACATCCAGTGCGCCGCCAATGGTTTC
TCGGGGCGCCCGCCGCCCTCCTACACTGACTACCCGCCTACAAGCGGTCT
GAGAAGCCCAGGCGCATCCAGACGGGGCCGCCCGGCATCGGCAGGCGCGA
GGATGCCGGGCGTTGATGACTCTGGCCGTGGCGGGAAGAACCTCCATGGA
GGAGCGTTTTGACATCCAGTGCGCCGCCAATGGTTTCTCGGGGCGCCCGC
CGCCCTCCTACACTGACTACCCGCCTACAAGCGGTCTGAGAAGCCCAGGC
GCATCCAGACGGGGCCGCCCGGCATCGGCAGGCGCGAGGATGCCCACCGC
CCCCCGTGGTGGCCGGCCCCGCGGGAACTTCCCGCCCTCCTCCTCCTCCT
TCCTCTCCCTCCTCTCCGAGCCGTCCCCGCCGCGGGCGCGGGGGGGGCAG
CAGCCGAGGCCGGCCTCCGCGCCTGCCGGGGGGTCCGCCGTAGCCGCGGA
CGCCTTCCAAGGAACACCCCCGGGGCCCGGAGACAACCGGGCCTTCTCCC
CCACCGCCCCCCGTGGTGGCCGGCCCCGCGGGAACTTCCCGCCCTCCTCC
TCCTCCTTCCTCTCCCTCCTCTCCGAGCCGTCCCCGCCGCGGGCGCGGGG
GGGGCAGCAGCCGAGGCCGGCCTCCGCGCCTGCCGGGGGGTCCGCCGTAG
CCGCGGACGCCTTCCAAGGAACACCCCCGGGGCCCGGAGACAACCGGGCC
TTCTCC
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