mRNA_S-ischiensis_contig11.2282.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2282.1
Unique NamemRNA_S-ischiensis_contig11.2282.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2282.1 vs. uniprot
Match: A0A6H5L2B2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L2B2_9PHAE)

HSP 1 Score: 63.2 bits (152), Expect = 6.520e-7
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 2 
Query: 1172 TRKQQWRRARTRRDAWGELPPELLQHMLGIPDPKGMNKSTSWDHSFTA 1315
            TRKQ+WRR RTR+ AWG+LPPELL  ML     + M KS SWDHS+ A
Sbjct:    3 TRKQRWRRTRTRKQAWGDLPPELLDAMLAAGGGR-MPKSVSWDHSYAA 49
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2282.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A6H5L2B2_9PHAE6.520e-762.50Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2519066..2520410 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size371
Cds size189
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.0362473-CDS-S-ischiensis_contig11:2519065..25192541622815612.0362473-CDS-S-ischiensis_contig11:2519065..2519254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2519066..2519254 -
1695739803.1892269-CDS-S-ischiensis_contig11:2519065..25192541695739803.1892269-CDS-S-ischiensis_contig11:2519065..2519254Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2519066..2519254 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815612.0474024-UTR-S-ischiensis_contig11:2520230..25204101622815612.0474024-UTR-S-ischiensis_contig11:2520230..2520410Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2520231..2520410 -
1695739803.2016501-UTR-S-ischiensis_contig11:2520230..25204101695739803.2016501-UTR-S-ischiensis_contig11:2520230..2520410Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2520231..2520410 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2282.1prot_S-ischiensis_contig11.2282.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2519066..2519254 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2282.1

>prot_S-ischiensis_contig11.2282.1 ID=prot_S-ischiensis_contig11.2282.1|Name=mRNA_S-ischiensis_contig11.2282.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=63bp
MGPPLTRKQQWRRARTRRDAWGELPPELLQHMLGIPDPKGMNKSTSWDHS
FTAAARSKAAQEA
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mRNA from alignment at S-ischiensis_contig11:2519066..2520410-

Legend: UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2282.1 ID=mRNA_S-ischiensis_contig11.2282.1|Name=mRNA_S-ischiensis_contig11.2282.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1345bp|location=Sequence derived from alignment at S-ischiensis_contig11:2519066..2520410- (Schizocladia ischiensis KU_0333)
CGCAGAGCGCGTACATACGTGTACGCGCGGGGGAGTGGAAGGGCAGGGTT
GGGGGGTGTTAAGTAAGCGAACTGACAAGCACTGGCTCCATGGCCAGCTT
TGCTGCAGGGTGAACTCGCGACCACCGAACCGTCCTCCCACACCCTTGAA
GGGCGTTGACAGTGAGGAAGGGAAGCGAAGGTGAGAGGGAGGGGAGGGAG
GGGGGGGGTGGAGGGAGGGTGAGAGGGCGGGCAGTCATCACTGTGCTTCA
GTGGGGCGAGGACCGGCCTGCGGCCGTACACCGGCCCATGCCGGGGGGGG
GAACACTCGGTTTCGCGGGGAAGGTATCGGTTCAACTACAATTGCCTTTG
GTTTCCCTTTGGGGTTCGCGGGCCCGTGTGAACTTGTGTATACGAACACT
CACTCTCCGCCCGTCGCCACAGCCTTATTTCTGGTGTTTGCCATCGTGCC
ACCTCGGAAATCTAGTCGCCCCCACCCCTGTCGCCGTTTTGGCCCTCCTC
GAGCCACCTTTCCCAAAGTAGAATTTGCAGCCCTGGCATCGATGTTCTAT
AAGGGAGGAGCGCGCACTGACCTCTCATACCGCAGTAGGCTGTGATTTTC
CAGTAGCGGCCGTACTTCGGGGCGTGTGGTGCATGTGTGGAGGGGAAAAT
TGACACGTCGGGCGGGACTGCTCCCGCCACCGTGGTGCTACAGTGCTCGA
GGGGTGCTGGAACGGACACTGGTTTGCTGTACCGCTCACGTAGAGCTATG
CATTGAAGCAGGGTGGGCTGTGAGATGTGGTGGACGGCGGGAGCACCACC
GGGCAAAGTGGCCACAGACGGCAACATACTTTCGGGGTTCCAAAACGCAA
AACAGCGACCATTTATTTTTTATTTTTGTGCGCTTCCATCCAAGGGCCCC
CGTCACAAGCTACGCACCCTCCAGCGCGAGGCCTCTGTAACACTGGGGTG
AAATACACTCCGCTTCTCGGCGTTTCCCACCCCTGTTACCCCCGACTTTT
GGCACAACATGGCTGCAGTTACCTCCCACCTGCACGGCTTGCCCCAACAT
ATCACAGTGCGCTTTGCCTCTTGCTTGCACACCGCCTACGAATCCCATGG
GAAACGCTGTCGCACGCACGCCGGCCTTCTGGGCGGTCTCCTACCAACCT
CGGCAGATGGGCCCCCCGCTGACAAGAAAGCAGCAATGGCGGCGCGCCAG
AACGCGCAGGGACGCGTGGGGCGAATTGCCGCCCGAACTGCTACAGCACA
TGCTGGGCATCCCCGACCCCAAGGGCATGAACAAGTCCACGTCCTGGGAC
CACAGCTTCACGGCCGCGGCGCGCTCCAAGGCCGCGCAGGAGGCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2519066..2520410-

>mRNA_S-ischiensis_contig11.2282.1 ID=mRNA_S-ischiensis_contig11.2282.1|Name=mRNA_S-ischiensis_contig11.2282.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=378bp|location=Sequence derived from alignment at S-ischiensis_contig11:2519066..2520410- (Schizocladia ischiensis KU_0333)
ATGGGCCCCCCGCTGACAAGAAAGCAGCAATGGCGGCGCGCCAGAACGCG
CAGGGACGCGTGGGGCGAATTGCCGCCCGAACTGCTACAGCACATGCTGG
GCATCCCCGACCCCAAGGGCATGAACAAGTCCACGTCCTGGGACCACAGC
TTCACGGCCGCGGCGCGCTCCAAGGCCGCGCAGGAGGCTATGGGCCCCCC
GCTGACAAGAAAGCAGCAATGGCGGCGCGCCAGAACGCGCAGGGACGCGT
GGGGCGAATTGCCGCCCGAACTGCTACAGCACATGCTGGGCATCCCCGAC
CCCAAGGGCATGAACAAGTCCACGTCCTGGGACCACAGCTTCACGGCCGC
GGCGCGCTCCAAGGCCGCGCAGGAGGCT
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