mRNA_S-ischiensis_contig11.2273.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2273.1
Unique NamemRNA_S-ischiensis_contig11.2273.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2273.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2452975..2456481 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size1964
Cds size987
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2273.1prot_S-ischiensis_contig11.2273.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2455085..2456071 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.3027234-UTR-S-ischiensis_contig11:2452974..24532111622815584.3027234-UTR-S-ischiensis_contig11:2452974..2453211Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2452975..2453211 +
1695739785.057405-UTR-S-ischiensis_contig11:2452974..24532111695739785.057405-UTR-S-ischiensis_contig11:2452974..2453211Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2452975..2453211 +
1622815584.316707-UTR-S-ischiensis_contig11:2454754..24550841622815584.316707-UTR-S-ischiensis_contig11:2454754..2455084Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2454755..2455084 +
1695739785.0665336-UTR-S-ischiensis_contig11:2454754..24550841695739785.0665336-UTR-S-ischiensis_contig11:2454754..2455084Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2454755..2455084 +
1622815584.3421857-UTR-S-ischiensis_contig11:2456071..24564811622815584.3421857-UTR-S-ischiensis_contig11:2456071..2456481Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2456072..2456481 +
1695739785.088205-UTR-S-ischiensis_contig11:2456071..24564811695739785.088205-UTR-S-ischiensis_contig11:2456071..2456481Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2456072..2456481 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815584.3306658-CDS-S-ischiensis_contig11:2455084..24560711622815584.3306658-CDS-S-ischiensis_contig11:2455084..2456071Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2455085..2456071 +
1695739785.0749717-CDS-S-ischiensis_contig11:2455084..24560711695739785.0749717-CDS-S-ischiensis_contig11:2455084..2456071Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2455085..2456071 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2273.1

>prot_S-ischiensis_contig11.2273.1 ID=prot_S-ischiensis_contig11.2273.1|Name=mRNA_S-ischiensis_contig11.2273.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=329bp
MVCWSAAKVGHLELLQCARANRCPWEPYTCSKAAEGGHLTLLQWARANGC
PWDDTCTSAAEGGHLALLKWARANGCPWDESTCSKAAERGHLALLQWARA
NGCPWDVLTCYYAARGGHLTVLQWARANGCPWHIAISWGAALGGHLALLQ
WARDHGCPWDKKTCFLAAQRGHITALQWVRANGCPWDEYTCSKAAEGGHL
ACLQWARANGCPWDEGTCFRAAGGGHLYVLQWARANGGPWDEDTCATAAE
GGHLAILQWARANGCPWDESTCSRAAWVGHLDVLQWARANGGPWDHRAVE
AAEIHGHAAVALWARANGCPEDDVDSDG*
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mRNA from alignment at S-ischiensis_contig11:2452975..2456481+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2273.1 ID=mRNA_S-ischiensis_contig11.2273.1|Name=mRNA_S-ischiensis_contig11.2273.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3507bp|location=Sequence derived from alignment at S-ischiensis_contig11:2452975..2456481+ (Schizocladia ischiensis KU_0333)
GGGATGGTAGGTGCAACCCCGATGTACGCGCCTAAATAAGTAGGGGGTCA
GTAGACCTCCAGGGGTGCGCCTTCCCCACGAACAGCGGGCCTGGAGGAGA
ACCCGGTACCTGGGCAGGCTCTTCGTCGATTGGGCACGGGTAATTGTTGC
ATCGAGCCTACGCAGGGCACACCACACTTGGAGAGCGGCCACGCAGACGG
ATCAGGCTGTGTCCTGGACAGACCAGCTTTGATTCAGGTGGGTGTGGTAC
TGGCGGAAACAATGGTACTGGTTATGGCACTGACCAGAGCAATGTCCATG
TGTTGACAGCATGTCCATGTAAACTTACTGGTCCCAAAGGCAGTGCGCTG
CTTTTGTTGTGGATTACTGTACCCCCCCAAAGTGACAACCCTGTGTCTTT
GACTTGGTCTCAGCTTGATCAGACAAACACAGAGCACAACTTTCGATCCC
CAGTGAGCACCTTCATATTTGTCTGACAGTCTGTGCCTCCAGGCTTCTCC
TTGTTGGGATAGTTTGGTCGTGGCAACAATTCGTGGCCCAATGGAAAGAC
AGCTGGCCACGCCTATCGCGGACCGAGCGTCCTACTGCCAGTCGCAGCGC
AACTACAACTGTACACTACTAGTACATTGCACCCCCTTTTTCCGTCTCTC
ATGGAGTGTTGCCGGCAATGAAGGGCAAATGGCTTCATTTATCCCTGCGC
TTCACCGCAACCGGCTCGTGTGGCCCACCTGATGTGGCGGCACTTGGCCG
TCCCGCCTGTGGTTTCCCTCGAAATGCAACCCAATGGGACGGGGCTACAA
TAAATAGAGGCCCTTTGGTTGTCATGGTCCAATCCCCGGGTATGTTTGTT
ATTTCACGTGGTGTGTACTCCATGCACAGTTGTGCTAGTTTACCGTCACA
TCACATCACACCACATCACATTTGGGGTACCCGCCCGACCCTAGGGCGTC
GGGCGACCACTCGGGGACCGAACAACCACAAAGTATGCATATTTTTCGCG
GAACTGTGGGCCAAGGATGCGTGTACCCAGTCACGTTCAACCCTGTGCTC
GAGTGTATCTACTGGTTGTAGCATGTTTGCTACACAGCATGTGGTACTAC
TGTACTCCGGTACTACCTACAATTGTACTCCAGGGGGGCTACTTGAGCAA
AGGGTTAACGCTTAGCCCCCCCCACCAAAGCCCACCTGCAAAGATTGCAC
GCCTCCTTACATCCTCTTAACCCTTTTACCCCTGGGGTCTATATAATCAT
AGGGTTTTAGTGTGTAAGTCCAGTTTAGCAGGCGTAAAGGGTTGAGGCTA
ACCGACAGGACTATCCCCATGACCCGCGGGCGGGGTTGGGTGTTTATGAC
ACCAGGTGTACACGCATCCAGGCAACTGTGTTTGCTGCTTCGGACTACAA
CATGCCTCTGTGCTGTTCCGGCCTCCTTTTTTGCTGCGCTTCCGAGTGTT
AATGTGACAGTGTCAACACAGAGCGAGTTGCGGGCCACGTCGCTAAAGAC
CAACTCAACAGTGGCCCTTCCAGCTTGCCGGGGAAGGAGCGGCGTGTGAG
GGAATGAATACGCGGGGAAGAGTACTTGCAAGTGCTTGAGTGTATTCTAT
CCTTGTACTTAGAGAAGGGACAAAGACGAGGATAATTCGGGTCCAGGGCA
TGCACAGAGACGAGAAAACCTTGTCCGAACGTGAGTACACACTTACCAGC
TTCACGTGCTGTCCGTCGAGCACGCTCGGGCACTTGATGGAATTTCATTT
GGTCGTTCACCTCCTGTGTGCGCGCTGCAGGCATTGGCATGGACCACGCG
GATGCAGGCGGCCCCCCTCCGCACCACCCCCTTCTCGAGGCTGGCGCCGC
ACTCTCCAATGTCTTAGAGTAAACCTGACACGGAGTTCTTGTTTGTGGGC
GGGGTGTCGCGGGCCTGGCGGGCATGGTGGGTCCAGTCGGGCCGGCCTGT
GACAACGAGTGTGGCTGCCGTGGTGGCTTCCGTGGTGCAGCTCCAACAGG
CAAGGGCCAGCGGGATCCCTTGGGACGTATCCATATGCCGCTGGGCTGCC
GAGGGGGGGCACCTCGAGGCACTGCAGTGGGCGAGGGCCAACGGGTGCCC
TTGGGACTGGATGGTCTGCTGGAGCGCTGCCAAGGTGGGGCACCTTGAAC
TGCTGCAGTGTGCGAGGGCCAACAGGTGCCCTTGGGAACCATACACCTGC
TCCAAGGCTGCCGAGGGGGGGCACCTCACACTTCTGCAGTGGGCGAGGGC
CAACGGGTGCCCATGGGATGACACCTGCACCAGCGCTGCCGAGGGGGGGC
ACCTTGCGCTTCTGAAGTGGGCAAGGGCCAACGGGTGCCCATGGGATGAA
AGCACCTGCTCCAAAGCTGCAGAGAGGGGGCACCTTGCACTCCTGCAGTG
GGCAAGGGCCAACGGGTGCCCTTGGGATGTGCTCACATGCTACTACGCTG
CCAGGGGGGGGCACCTCACGGTGCTGCAATGGGCGAGGGCCAACGGGTGC
CCGTGGCATATAGCCATCAGCTGGGGGGCTGCCCTGGGGGGGCACCTCGC
GCTTCTGCAGTGGGCGAGGGACCACGGGTGCCCATGGGACAAAAAGACAT
GCTTCCTCGCTGCCCAGAGGGGACATATCACGGCTCTGCAGTGGGTGAGG
GCCAACGGGTGCCCATGGGATGAATACACCTGCTCTAAGGCTGCTGAGGG
GGGGCACCTCGCATGTCTGCAGTGGGCGAGGGCCAACGGGTGCCCATGGG
ATGAAGGCACCTGCTTCAGGGCTGCCGGGGGGGGGCACCTCTACGTGCTG
CAGTGGGCGAGGGCCAATGGGGGTCCTTGGGATGAAGACACCTGCGCCAC
CGCTGCCGAGGGGGGGCACCTTGCGATTCTGCAGTGGGCGAGGGCCAACG
GGTGCCCATGGGATGAAAGCACCTGCTCAAGGGCTGCCTGGGTGGGACAC
CTCGATGTGCTGCAGTGGGCGAGGGCCAATGGGGGTCCTTGGGACCACCG
GGCTGTGGAGGCGGCTGAGATACATGGCCATGCCGCTGTGGCGCTATGGG
CGAGGGCGAATGGGTGTCCGGAAGACGATGTTGATAGCGATGGCTGATGG
ATATGGTAGTAAGTGCATACGAGCACTCGAGTATTTGCTTGCTCCAGATA
CCTCCAAGTGACTTCGTAGTGGAGAGTATGGGAGTCACTCGCTGTAGTGC
ACTTACGGTAGTACTTGAGTACTGTAGACCGTGGTGTATGTTGAGAAGTA
CAGTACAGTACCGTACAGGGGATTGCCTACATCGTAACTCGGAGTACTCC
GAAGTACATACTACTGTACATGCTGTAGTATACAGCAGAGCCGTATTGCA
ATTGGCTAGCTATGATCCACACTAGGCAAGTAGGTACTGTACCGTAGTCA
CCGGACAGCCCTTGCGTGTGCAAAATACATAATATATATGACGGCCGTCG
AGTTTCCTACTCTACATCAACTTTGGGAGGCAAAAGCTCTCTGACGCGCA
ACAGCTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2452975..2456481+

>mRNA_S-ischiensis_contig11.2273.1 ID=mRNA_S-ischiensis_contig11.2273.1|Name=mRNA_S-ischiensis_contig11.2273.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1974bp|location=Sequence derived from alignment at S-ischiensis_contig11:2452975..2456481+ (Schizocladia ischiensis KU_0333)
ATGGTCTGCTGGAGCGCTGCCAAGGTGGGGCACCTTGAACTGCTGCAGTG
TGCGAGGGCCAACAGGTGCCCTTGGGAACCATACACCTGCTCCAAGGCTG
CCGAGGGGGGGCACCTCACACTTCTGCAGTGGGCGAGGGCCAACGGGTGC
CCATGGGATGACACCTGCACCAGCGCTGCCGAGGGGGGGCACCTTGCGCT
TCTGAAGTGGGCAAGGGCCAACGGGTGCCCATGGGATGAAAGCACCTGCT
CCAAAGCTGCAGAGAGGGGGCACCTTGCACTCCTGCAGTGGGCAAGGGCC
AACGGGTGCCCTTGGGATGTGCTCACATGCTACTACGCTGCCAGGGGGGG
GCACCTCACGGTGCTGCAATGGGCGAGGGCCAACGGGTGCCCGTGGCATA
TAGCCATCAGCTGGGGGGCTGCCCTGGGGGGGCACCTCGCGCTTCTGCAG
TGGGCGAGGGACCACGGGTGCCCATGGGACAAAAAGACATGCTTCCTCGC
TGCCCAGAGGGGACATATCACGGCTCTGCAGTGGGTGAGGGCCAACGGGT
GCCCATGGGATGAATACACCTGCTCTAAGGCTGCTGAGGGGGGGCACCTC
GCATGTCTGCAGTGGGCGAGGGCCAACGGGTGCCCATGGGATGAAGGCAC
CTGCTTCAGGGCTGCCGGGGGGGGGCACCTCTACGTGCTGCAGTGGGCGA
GGGCCAATGGGGGTCCTTGGGATGAAGACACCTGCGCCACCGCTGCCGAG
GGGGGGCACCTTGCGATTCTGCAGTGGGCGAGGGCCAACGGGTGCCCATG
GGATGAAAGCACCTGCTCAAGGGCTGCCTGGGTGGGACACCTCGATGTGC
TGCAGTGGGCGAGGGCCAATGGGGGTCCTTGGGACCACCGGGCTGTGGAG
GCGGCTGAGATACATGGCCATGCCGCTGTGGCGCTATGGGCGAGGGCGAA
TGGGTGTCCGGAAGACGATGTTGATAGCGATGGCTGAATGGTCTGCTGGA
GCGCTGCCAAGGTGGGGCACCTTGAACTGCTGCAGTGTGCGAGGGCCAAC
AGGTGCCCTTGGGAACCATACACCTGCTCCAAGGCTGCCGAGGGGGGGCA
CCTCACACTTCTGCAGTGGGCGAGGGCCAACGGGTGCCCATGGGATGACA
CCTGCACCAGCGCTGCCGAGGGGGGGCACCTTGCGCTTCTGAAGTGGGCA
AGGGCCAACGGGTGCCCATGGGATGAAAGCACCTGCTCCAAAGCTGCAGA
GAGGGGGCACCTTGCACTCCTGCAGTGGGCAAGGGCCAACGGGTGCCCTT
GGGATGTGCTCACATGCTACTACGCTGCCAGGGGGGGGCACCTCACGGTG
CTGCAATGGGCGAGGGCCAACGGGTGCCCGTGGCATATAGCCATCAGCTG
GGGGGCTGCCCTGGGGGGGCACCTCGCGCTTCTGCAGTGGGCGAGGGACC
ACGGGTGCCCATGGGACAAAAAGACATGCTTCCTCGCTGCCCAGAGGGGA
CATATCACGGCTCTGCAGTGGGTGAGGGCCAACGGGTGCCCATGGGATGA
ATACACCTGCTCTAAGGCTGCTGAGGGGGGGCACCTCGCATGTCTGCAGT
GGGCGAGGGCCAACGGGTGCCCATGGGATGAAGGCACCTGCTTCAGGGCT
GCCGGGGGGGGGCACCTCTACGTGCTGCAGTGGGCGAGGGCCAATGGGGG
TCCTTGGGATGAAGACACCTGCGCCACCGCTGCCGAGGGGGGGCACCTTG
CGATTCTGCAGTGGGCGAGGGCCAACGGGTGCCCATGGGATGAAAGCACC
TGCTCAAGGGCTGCCTGGGTGGGACACCTCGATGTGCTGCAGTGGGCGAG
GGCCAATGGGGGTCCTTGGGACCACCGGGCTGTGGAGGCGGCTGAGATAC
ATGGCCATGCCGCTGTGGCGCTATGGGCGAGGGCGAATGGGTGTCCGGAA
GACGATGTTGATAGCGATGGCTGA
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