mRNA_S-ischiensis_contig11.2271.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2271.1
Unique NamemRNA_S-ischiensis_contig11.2271.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Match: A0A6H5KVH9_9PHAE (t-SNARE coiled-coil homology domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KVH9_9PHAE)

HSP 1 Score: 248 bits (632), Expect = 4.380e-76
Identity = 133/247 (53.85%), Postives = 174/247 (70.45%), Query Frame = 1 
Query:    1 AMGDVKYWDGNYGKTLDDLEGHVSAAERGSGEQRDDSIGAATQTVRRLQGIKRSYNLEIKLMRDPATKGHYANAKAEKDGRLEELVARLEAAKGADSGQRSELFSGRTEAAGAXXXXXXXXXXXXXGRPTPEQKLDQADRIQDKTEAAYQNMIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVFSKRMMTDKFIQCFGCLNVLVLVSIVIYVVVDNVGLPGSEPSTPPDP 741
            A GDVKYWD +YGKTLD L+G ++  E GSG+ R+D++  A+++++RL G++RSYNLEIKL++DP  K HY   K++KD R   L +R +AAK +    R ELF GR +                    + E KL +AD+ QDKTEAAY+NMI VL ++EA A +TA EL +QR+Q+ R+TEDV EIDSLL RAD+LVKVFSKRMMTDKFIQCFGCLNV  +V+I++YVVV  V LPG + +  PDP
Sbjct:    2 ASGDVKYWDTSYGKTLDQLDGFIATMESGSGDAREDAMSEASRSLKRLAGMRRSYNLEIKLIKDPNMKAHYNLEKSQKDSRYATLQSRFDAAKASGDSTRDELFGGRRDVESGEAQGK-----------SAEAKLTEADQYQDKTEAAYKNMIGVLQETEATADNTAVELTNQREQLARITEDVTEIDSLLTRADRLVKVFSKRMMTDKFIQCFGCLNVSAMVAIIVYVVVQQVELPGGDDNDVPDP 237
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BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Match: A0A835Z1V1_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z1V1_9STRA)

HSP 1 Score: 214 bits (544), Expect = 5.110e-63
Identity = 123/240 (51.25%), Postives = 158/240 (65.83%), Query Frame = 1 
Query:    4 MGDVKYWDGNYGKTLDDLEGHVSAAERGSGEQRDDSIGAATQTVRRLQGIKRSYNLEIKLMRDPATKGHYANAKAEKDGRLEELVARLEAAKGADSGQ-RSELFSGRTEAAGAXXXXXXXXXXXXXGRPTPEQKLDQADRIQDKTEAAYQNMIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVFSKRMMTDKFIQCFGCLNVLVLVSIVIYVVVDNVGLPGSE 720
            MGDVKYWD +YGK LD+L   V A +  S  +++  I  ATQTVRRLQG+KRSYNLEIKLMRD   K  Y   K  KD +L EL A+LE AK   +G  +  LFSGR                      T +QKLDQA+ IQ+KTEA Y+N+I VL  +E V + TA  L++QR QI+ +TE+V+E+D +L RA+KL+ VFS+R+ TDK IQCF  +NV  LV+I++YVV+ NVGLPGS 
Sbjct:    1 MGDVKYWDTSYGKALDELSDQVKAVKGASAAEKEAKIATATQTVRRLQGMKRSYNLEIKLMRDATQKASYQEEKNAKDAKLTELEAQLEEAKNKPAGSDKVSLFSGRAAEEPKVK--------------TADQKLDQAEIIQNKTEAKYKNIITVLEQTEEVGSATAATLQEQRAQISEITENVMEMDGMLTRANKLIMVFSRRLATDKMIQCFAFINVAALVAIIVYVVIKNVGLPGSS 226
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BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Match: A0A835Z325_9STRA (Soluble NSF attachment protein receptor n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z325_9STRA)

HSP 1 Score: 191 bits (485), Expect = 2.610e-54
Identity = 120/248 (48.39%), Postives = 145/248 (58.47%), Query Frame = 1 
Query:    4 MGDVKYWDGNYGKTLDDLEGHV-SAAERGSGEQRDDSIGAATQTVRRLQGIKRSYNLEIKLMRDPATKGHYANAKAEKDGRLEELVARLEAA--KGADSGQRSELFSGRT-EAAGAXXXXXXXXXXXXXGRPTPEQKLDQADRIQDKTEAAYQNMIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVFSKRMMTDKFIQCFGCLNVLVLVSIVIYVVVDNVGLPGSEPSTPP 735
            MGD+++WDGNYG  LD LE  +    E  +   RD     A  TVRRLQGIKRSYNLEIKL RD   K  Y +AKA KD RLE+L A+LE A  K     +R+ LF GR  E A                 P  + KLDQA  IQDKTEA Y+NM+ VL  +E +    A  L DQR Q+  + EDV  +   L RA KL+ VF KR+ TDKFIQCFG +NV +LV I++YVV+   GL  S  S PP
Sbjct:    1 MGDLQFWDGNYGNVLDGLESQLHQVREAYTPSDRDQLASTAASTVRRLQGIKRSYNLEIKLTRDTGLKAMYTDAKAAKDARLEQLEAQLEEARRKPGREAERAALFDGRAIEMA-----------------PAADAKLDQASAIQDKTEARYKNMVTVLAQTEEIGTAAAASLADQRTQMVAIDEDVKVMHENLTRAGKLLHVFGKRLATDKFIQCFGFVNVALLVGIILYVVITKTGLSSSGASNPP 231
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BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Match: A0A7S4A3K9_9STRA (Hypothetical protein (Fragment) n=2 Tax=Pelagomonas calceolata TaxID=35677 RepID=A0A7S4A3K9_9STRA)

HSP 1 Score: 117 bits (294), Expect = 4.790e-26
Identity = 80/228 (35.09%), Postives = 121/228 (53.07%), Query Frame = 1 
Query:   10 DVKYWDGNYGKTLDDLEGHVSAAERGSGEQRDDSIGAATQTVRRLQGIKRSYNLEIKLMRDPATKGHYANAKAEKDGRLEELVARLEAAKGADSGQRSELFSGRTEAAGAXXXXXXXXXXXXXGRPTPEQKLDQADRIQDKTEAAYQNMIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVFSKRMMTDKFIQCFGCLNVLVLVSIVIYVVV 693
            D+ YW  +Y  ++DD +  V++      ++R   I AA   ++R  GIK+SY LE++L+RD   K +Y  +  E D R +EL  R+E  +  +  +RS L      A G                   +  LD+A  +QDKTE   +   Q++  S+ V A T  EL  Q+DQI  V+ D++ I+  L RAD+L++ F+KRMMTDK I  F  LN+  L  I++Y VV
Sbjct:   62 DIDYWSDSYRSSIDDADRLVTSLGACEPDERLSIIDAADAKLKRAGGIKKSYKLELRLLRDRELKRNYEESLRELDDRRDELKRRVEEHR--ERTERSTLLQETPAAFGEHKGN--------------DYYLDKAHSLQDKTENTLERTTQMIEASKEVGASTLSELERQQDQIKDVSADIMLIEDNLSRADRLIRNFTKRMMTDKLIMGFAFLNMCALTGIIVYCVV 273
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BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Match: A0A7S1FMQ8_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1FMQ8_9STRA)

HSP 1 Score: 114 bits (286), Expect = 1.660e-25
Identity = 81/236 (34.32%), Postives = 123/236 (52.12%), Query Frame = 1 
Query:    4 MGDVKYWDGNYGK---TLDDLEGHVSAAERGSGEQRDDSIGAATQTVRRLQGIKRSYNLEIKLMRD-PATKGHYANAKAEKDGRLEELVARLEAAKGADSGQRSELFSGRTEAAGAXXXXXXXXXXXXXGRPTPEQKLDQ----ADRIQDKTEAAYQNMIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVFSKRMMTDKFIQCFGCLNVLVLVSIVIYV 687
            MGD++YW  ++     TL ++   +    +        +I  A   +++   I++SY LE++LM   P  K  Y N   E +  L E   +L+ AK     QRSEL SG                      P PE+  DQ    A +IQDKT+ +      ++ +S+ V   T +EL  QR+QI RVT+DV+ I+  L RA+KL+K F +RM TDKFIQCF C+N+L+L+ +V ++
Sbjct:    1 MGDIEYWRDSFQSELSTLPEIIRDIDRVRKKGPYAIQSAIRNAEDQLKKCSNIQKSYKLELRLMVGMPVEKKKYENDLQELENELRECNDKLDDAKA--RAQRSELMSGANNEG-----------------PDPERDGDQMLMEAGKIQDKTKESLMTTQNLIHESKEVGVTTLEELNRQRNQIVRVTDDVMAIEGELARAEKLIKTFGRRMATDKFIQCFTCVNILLLLGVVCFI 217
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BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Match: A0A7S3PTS2_9STRA (Hypothetical protein n=1 Tax=Chaetoceros debilis TaxID=122233 RepID=A0A7S3PTS2_9STRA)

HSP 1 Score: 114 bits (285), Expect = 2.400e-25
Identity = 73/231 (31.60%), Postives = 120/231 (51.95%), Query Frame = 1 
Query:    4 MGDVKYWDGNYGKTLDDLEGHVSAAERGSGE-QRDDSIGAATQTVRRLQGIKRSYNLEIKLMRDPATKGHYANAKAEKDGRLEELVARLEAAKGADSGQRSELFSGRTEAAGAXXXXXXXXXXXXXGRPTPEQKLDQADRIQDKTEAAYQNMIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVFSKRMMTDKFIQCFGCLNVLVLVSIVIYVVV 693
            M D++YW       ++ +   V  A+  S + +R  S+  A + +R  +   RS+ +EI+L+ D   +  Y       +  + +L A ++  +    G RS+LF G     G                   +  LD A R+QDKT  +  N  Q++ DS+ VA+ T + L+ QR+QI  +  DV+ +   L RADKL+K F KRM TDK IQCF C+N++++V +V+Y+V+
Sbjct:    1 MADIQYWKDAIVGEIETVRNLVQVAQNTSDDLERSASLEKAEKGLRSTKSNTRSFKMEIRLVFDHNERSKYERELTNFEQSISQLTAEIKNLR--SGGARSQLFMGANAGEGTSLNEDPVAAG--------DAVLDGASRLQDKTGQSLGNTKQMIADSKMVASSTVEALKQQREQITNIEGDVLRVKDNLNRADKLIKNFGKRMATDKLIQCFACVNIMLVVGVVLYLVI 221
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BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Match: B8BZJ7_THAPS (Uncharacterized protein n=1 Tax=Thalassiosira pseudonana TaxID=35128 RepID=B8BZJ7_THAPS)

HSP 1 Score: 112 bits (279), Expect = 1.090e-24
Identity = 73/204 (35.78%), Postives = 103/204 (50.49%), Query Frame = 1 
Query:  109 SIGAATQTVRRLQGIKRSYNLEIKLMRDPATKGHYANAKAEKDGRLEELVARLEAAKGADSGQRSELFSGRTEAAGAXXXXXXXXXXXXXGRPTPEQKLDQADRIQDKTEAAYQNMIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVFSKRMMTDKFIQCFGCLNVLVLVSIVIYVVVDNVGLPGSE 720
            ++  A + +R   G K+SY +E +L+ DP  K  Y N  +     L      L+A KG    QR ELF G    A               G    +  L   + IQDKT+ +  N   ++  S+ V   T +EL  QR+QI  V  + + I+  L RADKL+K F KRM TD+FIQCF C+N+L+LV +VIY ++    L G E
Sbjct:    6 TLDRAEKKLRAANGTKKSYKMETRLVADPNQKRMYENKLSRLSEELSSCANDLKAMKGGM--QRGELFVG----ARGKSSRGGGEYGEMSGEEAGDSMLSDMNNIQDKTKNSLANTKHMVAASKEVGEATMEELLRQREQIRNVDNEAMRIEDNLQRADKLIKTFGKRMATDRFIQCFACINILLLVGVVIYTILKKGSLTGGE 203
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BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Match: A0A7S0G6V6_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0G6V6_9STRA)

HSP 1 Score: 96.7 bits (239), Expect = 1.720e-19
Identity = 62/174 (35.63%), Postives = 98/174 (56.32%), Query Frame = 1 
Query:  169 LEIKLMRDPATKGHYANAKAEKDGRLEELVARLEAAKGADSGQRSELFSGRTEAAGAXXXXXXXXXXXXXGRPTPEQK--LDQADRIQDKTEAAYQNMIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVFSKRMMTDKFIQCFGCLNVLVLVSIVIY 684
            +E +L+ DP+T+  Y N  A+ +  ++ L   + A     +  + ELF G T                  G  T +    L +A ++QDKT  +  N  +++ +S+ V  +T +ELR QRDQ+N + E+ ++I+  L RAD+L+K F +RM TDKFIQCF  +NVL+LV +VIY
Sbjct:    1 METRLVSDPSTRRQYENKLAQHEDTIQSLKTDMVALSAEIN--KDELFIGATN------------DLEGGGNATTDGDALLGEASKLQDKTSDSLGNTKRMIEESKNVGMETMEELRRQRDQLNTIDEEAMKIEDNLVRADRLIKTFGRRMATDKFIQCFAVVNVLLLVGVVIY 160
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BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Match: A0A1E7F711_9STRA (t-SNARE coiled-coil homology domain-containing protein n=1 Tax=Fragilariopsis cylindrus CCMP1102 TaxID=635003 RepID=A0A1E7F711_9STRA)

HSP 1 Score: 95.9 bits (237), Expect = 9.020e-19
Identity = 74/255 (29.02%), Postives = 122/255 (47.84%), Query Frame = 1 
Query:    4 MGDVKYWDGNYGKTLDDLEGHVSAAERGSGEQRD--DSIGAATQTVRRLQGIKRSYNLEIKLMRDPATKGHYANAKAEKDGRLEELVARLEAAKGADSGQRSELFSGRTEAAGAXXXXXXXXXXXXXGRPTPEQKLDQADRIQDKTEAAYQNMIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVFSKRMMTDKFIQCFGCLNVLVLVSIVIYVVVDNVGLPGSEPSTPPDPTTV*CML 762
            M D++YW+    + ++ +E H+    +   +  D   ++  A   +R   G KRS+ +EI+L++D   +  Y+      +  L  L A L+A +  +   R ELF      +G              G       L++A  +QDKT+ A  N   ++  ++ V   T +EL+ QRD +  + ++   +   L RA+ LVK F KRM +DKFIQCF  LNVL+ V +V++ +    G  G+    P DP     ML
Sbjct:    1 MADIQYWEDTLTEEIELIE-HILDGIQSLSDPVDKASALEEADDKMRSATGTKRSFKMEIRLVQDTNQRSKYSKRLKNMENELRTLKADLKALQAEE--HRGELF-----ISGGASGPDGEQDPTMAGN----NMLNEASTVQDKTQDALGNTKAMIAQTKEVGVATLEELQRQRDVLQNIDKEADRMGDNLARAEALVKQFGKRMASDKFIQCFAVLNVLLFVGVVVWAIFKGRGGEGNA-DAPADPVATRRML 242
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BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Match: A0A7S2P5B9_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2P5B9_9STRA)

HSP 1 Score: 95.5 bits (236), Expect = 1.720e-18
Identity = 65/236 (27.54%), Postives = 115/236 (48.73%), Query Frame = 1 
Query:    4 MGDVKYWDGNYGKTLDDLEGHVSAAERGSGEQRDDSIGAATQTVRRLQGIKRSYNLEIKLMRDPATKGHYANAKAEKDGRLEELVARLEAAKGADSGQRSELFSGRTEAAGAXXXXXXXXXXXXXGRPTPEQK----LDQADRIQDKTEAAYQNMIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVFSKRMMTDKFIQCFGCLNVLVLVSIVIYVVVDN 699
            M D++YW+    + ++DL   +      +G ++      A + +R   G KRSY LE++++++   +  Y     + + +L+ L   L+  K   S  +  L  G                    GR TPEQ+    +++A   QDKT+ +     Q++ +S+ +  +T   L +QR QI R+          LGRAD L+K FSKRM  DKFIQC  C+N+ + + ++++++  N
Sbjct:    1 MADIEYWEETLKEEIEDLSTVLGLVVAQTGSKQKQKFDEADKKLRDANGTKRSYKLEMRVIKNATQRKMYEKQLKDHETKLKALADHLKNLK--SSATKDTLLEGADT-----------------GR-TPEQEGDAMMNEARNTQDKTQTSLDRTKQLVAESKDIGQNTLATLEEQRAQIERIDAHADRTMENLGRADLLIKNFSKRMANDKFIQCCACINISLFIGVILFLIFKN 216
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2271.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KVH9_9PHAE4.380e-7653.85t-SNARE coiled-coil homology domain-containing pro... [more]
A0A835Z1V1_9STRA5.110e-6351.25Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A835Z325_9STRA2.610e-5448.39Soluble NSF attachment protein receptor n=1 Tax=Tr... [more]
A0A7S4A3K9_9STRA4.790e-2635.09Hypothetical protein (Fragment) n=2 Tax=Pelagomona... [more]
A0A7S1FMQ8_9STRA1.660e-2534.32Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A7S3PTS2_9STRA2.400e-2531.60Hypothetical protein n=1 Tax=Chaetoceros debilis T... [more]
B8BZJ7_THAPS1.090e-2435.78Uncharacterized protein n=1 Tax=Thalassiosira pseu... [more]
A0A7S0G6V6_9STRA1.720e-1935.63Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
A0A1E7F711_9STRA9.020e-1929.02t-SNARE coiled-coil homology domain-containing pro... [more]
A0A7S2P5B9_9STRA1.720e-1827.54Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2434277..2440023 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score113.2
Seed ortholog evalue1.7e-22
Seed eggNOG ortholog35128.Thaps4535
EggNOG OGs29I5R@1,2RRCR@2759,2XCW0@2836
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionSoluble NSF Attachment Protein (SNAP) Receptor (SNARE)
Ec32 orthologEc-20_002310.1
Exons4
Model size1455
Cds size750
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2271.1prot_S-ischiensis_contig11.2271.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2434979..2440020 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.1850705-UTR-S-ischiensis_contig11:2434276..24349781622815611.1850705-UTR-S-ischiensis_contig11:2434276..2434978Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2434277..2434978 -
1695739802.6390877-UTR-S-ischiensis_contig11:2434276..24349781695739802.6390877-UTR-S-ischiensis_contig11:2434276..2434978Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2434277..2434978 -
1622815611.261471-UTR-S-ischiensis_contig11:2440020..24400231622815611.261471-UTR-S-ischiensis_contig11:2440020..2440023Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2440021..2440023 -
1695739802.702807-UTR-S-ischiensis_contig11:2440020..24400231695739802.702807-UTR-S-ischiensis_contig11:2440020..2440023Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2440021..2440023 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815611.198573-CDS-S-ischiensis_contig11:2434978..24351041622815611.198573-CDS-S-ischiensis_contig11:2434978..2435104Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2434979..2435104 -
1695739802.6577625-CDS-S-ischiensis_contig11:2434978..24351041695739802.6577625-CDS-S-ischiensis_contig11:2434978..2435104Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2434979..2435104 -
1622815611.2191896-CDS-S-ischiensis_contig11:2436593..24367701622815611.2191896-CDS-S-ischiensis_contig11:2436593..2436770Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2436594..2436770 -
1695739802.670492-CDS-S-ischiensis_contig11:2436593..24367701695739802.670492-CDS-S-ischiensis_contig11:2436593..2436770Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2436594..2436770 -
1622815611.2323937-CDS-S-ischiensis_contig11:2438346..24385171622815611.2323937-CDS-S-ischiensis_contig11:2438346..2438517Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2438347..2438517 -
1695739802.6825778-CDS-S-ischiensis_contig11:2438346..24385171695739802.6825778-CDS-S-ischiensis_contig11:2438346..2438517Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2438347..2438517 -
1622815611.246832-CDS-S-ischiensis_contig11:2439744..24400201622815611.246832-CDS-S-ischiensis_contig11:2439744..2440020Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2439745..2440020 -
1695739802.692617-CDS-S-ischiensis_contig11:2439744..24400201695739802.692617-CDS-S-ischiensis_contig11:2439744..2440020Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2439745..2440020 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2271.1

>prot_S-ischiensis_contig11.2271.1 ID=prot_S-ischiensis_contig11.2271.1|Name=mRNA_S-ischiensis_contig11.2271.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=250bp
MGDVKYWDGNYGKTLDDLEGHVSAAERGSGEQRDDSIGAATQTVRRLQGI
KRSYNLEIKLMRDPATKGHYANAKAEKDGRLEELVARLEAAKGADSGQRS
ELFSGRTEAAGAGGAAAAAAAAGAGGRPTPEQKLDQADRIQDKTEAAYQN
MIQVLGDSEAVAADTAQELRDQRDQINRVTEDVIEIDSLLGRADKLVKVF
SKRMMTDKFIQCFGCLNVLVLVSIVIYVVVDNVGLPGSEPSTPPDPTTV*
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mRNA from alignment at S-ischiensis_contig11:2434277..2440023-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2271.1 ID=mRNA_S-ischiensis_contig11.2271.1|Name=mRNA_S-ischiensis_contig11.2271.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5747bp|location=Sequence derived from alignment at S-ischiensis_contig11:2434277..2440023- (Schizocladia ischiensis KU_0333)
GCCATGGGTGATGTGAAGTACTGGGATGGAAACTATGGAAAGACCCTGGA
TGATCTCGAGGGCCATGTGTCCGCGGCGGAGAGGGGTTCCGGGGAACAGC
GGGACGACAGCATCGGGGCGGCGACGCAGACCGTACGACGACTGCAGGGG
ATCAAGCGCAGCTACAACCTGGAGATCAAGCTCATGCGGGACCCCGCGAC
CAAGGGACACTACGCGAACGCCAAAGCGGAGAAAGACGGTCGCCTAGAGG
AGCTGGTTGCCAGGCTGGAAGCCGCCAAGGTGACTACAAAATACAACAAG
CCCTGTGACCTCCAATGTTGAGTGTGCGCCCTCCAAGGGCACGTTTTCCC
TCATGCAACCATCAGGACAATGCAACAAGACCAGCCCTTTAGTTTTCCAT
TGCGCACCTGCGTATGCACTGCAGCTTCAGCGTGCATGGTGTAATCAGCG
CTCATGTGAGCTGACCGAAGCCGGGTGGCTAGCATATTGATCACAACATG
CCCTTGTGCCCATGTATACCTATGGCACGCACTCTGCTGGGATTTTTTGC
ATTTTGCCCTGTGTGCGCCCGTGCATCAGATGTCTGCCATCCTGAGAATC
CCTTGTTCTGATGCACGTGTCCCAGCACATTCCCAAACAAGACAACACAA
TACGCTGGCGCCATCCCAAAGAATAGGCCTCACCCAGTGCTTCTGTTTGG
GCGGCTTTTGGCATGATATACGGTAACGAGGGCGGTTTTTGGACCCAATC
CCAGCTATTTTGGGCGGGCTGTCCGTTTGCAAACCAGAATGGTGTTAGCC
ATCCCTTGGGAGGCTATGGCGCGCGTGGTCGGTATATAAGTTATTGAGTA
CAGCGTGAGTACGTACTTCGGAGTACAAACCAATGTAATTCAAAGTGTAT
GTTGCTCGTATACAGCATATATGTATGCACAGCCCCTCCCTCCCACCCTG
GCTTGCCAGGGGCGGGAGGGAGGTCGCTCCGCCCTCAATGACGGCGCGTG
GTCAATGGTCTCTGGAATACTGCAAGCACGATGTGAGTACATACAGTAGT
ATACGATATGCTCACGCAAGTGTGTTTGCGTGAGTATACACTCGCGTATA
ATGTACTCACACCTAACAGTGCTTGCAACAGTCCAGAGACCGTTGACCAC
GTGCCGCCGGGGGCGGAGCAATCTCCCAGCCCCCCCTGGCAATACAGCGC
AATCTCCCTCCCGCCCCCCGGGGGCACTACAACCCAACGCTACTTTAAAC
GGTTTTTCACTAAGTATGCGAGAGTCCATGGCTTGATAAGCTAAATTACT
CCTGTCGGAGGGCAAACCCGAAGTTTCGAATCAACTTGTGGCTGTCGGCC
AAGCATGCACAAGGTTATGTCGCAAGACCCCTAAGCGAATGAGTACTCGT
ACTTCGTACATACTTCGAAGTACACATACATGGAGTACATAGACCGTGCG
CGTGCGAAAACGATAACGTGGAACAACGTGCCGACCCGCAGGCCAAGGCC
GCCCAGGGCGCGGACTCGGGGCAACGGAGCGAGCTGTTTAGCGGGCGGAC
GGAGGCAGCCGGGGCGGGGGGCGCGGCGGCGGCGGCGGCGGCGGCGGGCG
CTGGGGGCAGGCCGACGCCGGAGCAGAAGCTGGACCAGGCGGACAGGATA
CAGGATAAGACCGAGGCTGCATACCAGGTGTGATTTTCCTCTCATTTCTC
TGATTTTCCTATGATACAGGATAAGACCGAGGCTGCATACCCGGTGCGGT
GCGCCGCTCGCTCGCCCCCGCTCTGATTTTCCTCTGATTATCCTATGATA
CAGGATAAGACCGAGGCTGCATACCAGGTGCGGTGCGCCGCTCGCCCTCC
CTCTGATTTTCCTGTGATTTTCCTCTGATTTGTCTTGTGTCCGGCGAGGA
AGGGCGGCCCGGCCCGCTTTCGGGGTCAGTAGTGGCGCAGTGTGATTTGC
TGTGCTGTGATGTGTATGTGTGTGTGTGTGTGTGCTCGCAATGGGCTTGC
CGCGGCCTGTACTCAAATGCCACCGTTGACCACACGCCTTCTTCCGAGTT
GGGGGCGATCCAGAAACTCCTCGAGTACTCGGAAGTACCAAGTAGTGGGG
TGTGGAGAGTCTATAGAACGTGGTACCATGTTTGTTACCCCCACTGAGTG
CACAATATGCTGACGAGCTTACTGCTTCGTACTAAGGCACTTCCGCTGTG
TAGTAGTGTTTACCTCGAAGTGGTGCGTATGAAAAGCAGTACGATTTTTG
TTGCGTGTGCCAACTGGCTGTAGCCCCATGGTCGATGGCTGGTGACAAAG
CCCACGGGGGCACCGTGATGCACACGCAACTTGAGCAGACTGGATCAGCA
CACTTGATGATGAATGATAAGATGATGGGTAAGTACACTTGATGATGATG
ATGATTACACTTGATGATGCTGATGAATACACGTGATGATGATGTTGAGT
GCGCTTGATGATGATGATGATGACTACGCTTGATGATGTTGATGAGCTCA
CTTAGTGACGATGATGATTACAACACTTGATGATGATGATGAGTACGCTT
GTTGATGATGATGAGTTAAGTACACTTGATACTGAGTACTTCGAAGTACA
CTTGATGATGATGGTACACTTGACGATGATGATGACTACACGCGGGCTTC
GAGCTCACGTGCATCTCAATCCCATCTCTCAGTACCTCGCCCCATGTTGT
TCCTGTCAATACTACTTCCATACAGGATGTAGAGCTCTAGGTTGATCAAG
CGCCTGCCAATGGATCCATGTCATGCGCACTGGTGACCGTGCGGATGCCG
GAATTCCGCAAGCCAATTCACTACACACTTGGAAGTATAGTACTTCGAAG
TACTTCGGAATACTCCAAAGTAAAGTGGGATAGTACAGTACATACTGTAC
ACTGCTCCGTCTCGACCGAGGCGCGTGGTCAGTGGTCTCGGGACTACGGC
AAGCACAACGTGAGTACATATATACTTCGCATCTATATATCTATATATCT
ATCTATATATATATATACGAGTATGTACCCACGTTGTTCTTGCCGTACCT
GTAGTCCCGGGATAGTGTGTAACTTACTCGAGTACTCACGTCTGATAGTA
CTTCGAAGTACAGTAAGTACTCAGTGCTGCACAGTCGTAGACCACTGATT
TGGTGGACTTCAACAACGCCAATCAGAATCCACGCTGGTAGCCCCACCCC
CCCCGCGCTCACCCTCCCGCCCACCCACGGTCCCACCCACCGGCCCGTTG
CAGAATATGATCCAGGTGCTGGGGGACTCCGAGGCGGTGGCCGCCGACAC
CGCGCAAGAGCTCCGGGACCAGCGGGACCAAATCAACCGGGTCACGGAGG
ATGTGATCGAGATCGACTCCCTGCTCGGACGTGCGGACAAGCTCGTCAAG
GTCTTCTCCAAGCGCATGATGACCGACAAGGTATTGCTAAGAATGTTTTT
AATAGTCTTGCTTTTTTTCCTTGCAGCATTATTGTTATGTACTGTAGTAC
AACTTTTTTCTTTGTCGCTTTAGCTATCTTGCTATAAAGTCAAGGTCTTC
TCCAAGCGCATGATGACCGACAAGGTATAGTTCAAAAATGTTTTTAATAA
TCTTGCTTTTTTTCCTTGCAGCATTACTTTTATGTACTACGTAGTAGCTT
TGTTCTTTGTCGCTTTATCTATCTTACTGTACAGTCACGGTCTTCTCCAA
TCGCATGATGACCGACAAGGTATAGTTTTTAAAGTTTTAAAAAATCTTGC
TTTTTTTCCTTGCAGCATTATTTCTATGTACTACGTAGTAGTATAACATT
TTTTGTTTGTCGCTTTATCTATCTTACGATACAGTCAAGGTCTTCTCCAA
GCGCATGATAGCTGACAAGGTGTGCGCCAGTGGTGGAATATCTAAGCAAA
TCAACCTATTTATCGACAGTACGGTACTGATCTAGGTATTTTGAGTGGTA
GATAAGCGGCGAGTTATATATCTATCGATATTCAAATGAGTTTGATGAAT
GCGAGTTCCGGGCCCCGTCCCAACAACCTAAGGTGGGGACCTCACCAGAA
GCCCTGCTTTTCACCCGCAGTCGATACTCGATCGTTTGACCCGTGCTAAA
TCCCAGTATTACAAGGCACAACACAGGGCGAGGTGCGGGCCATGTCACTA
CAGATCTCAACAGTGGCCCTTCCTTAGCTCGCCAGGGGAAAGTTGGGTGG
GGAAGGGGAGGTGGAGGGGGAGGAGGAGATCCCAGTAGTTTTTGGCATGA
AGATACAAAGCGAGTGGAAAAGAGGAGGTTCCTACTTATGTGAGTTCAGC
TCCCCCCTGCCCCGAACGCCTGTCTTTTCACTCGCCTTCACTCGCAGGGC
ACATAGAGCAGTAGCTAGTAATGCCACCCACGAAATCAGTCGAGCCCGAT
AAGTATCTACTGATCAATATTCCATCACTGGTGTCCGAGTGTCTTGTGCG
TCTGTCTGTCTGTCTCTCTATTGCATCTATCTCTTTCCTCCCCCACGTTC
ATCTCCGACACACTCAGAATCACACCCATCTCTCTATGGATCAATCCGAT
CGTATATATCCCGTGGCGCTTCTCATGCCCCCGCCCCTCTCCTCCTGTTC
CTCATTCCTCCCCCGAGGTAGTCTCCTAGGGCTCTGTCATGCAGTACACT
CGTAAGCACGCCAACTCTCCAACATTTGTACTTACTTTCAACGTACTCGA
GTGATTCCAGTGAGTCCTTATGTCATACAGGGAGCTACGCCGTCCCGTGC
ATGCTGGAAACCAGCCAGCATCGCAGAGTGCTCCGTCGCTACCTACTCAC
AAGTTTTCGCTGTCCTTCTCATTCCCTGCACTCCTCTTGCCCCCTACTAC
TCAGAAGTTGTCGCTGTCCTTCTCATTCCCTGCACTCCTCCTGCCCCCCC
CCCCCCGTTGTCCCGGCAGTTCATCCAGTGCTTTGGGTGCCTCAACGTGC
TGGTCCTGGTGTCCATAGTCATCTACGTGGTGGTGGACAACGTGGGTCTG
CCCGGTTCGGAGCCTTCAACTCCTCCGGACCCTACCACCGTCTGATGCAT
GCTGTACCCCGGGTCGGACCCTCCCGCCCCACCGGACCGTACCACCGTCT
GACGAGTGCTGTAGTGCTGTACCGGCACGTGGAGCACGGGTGTACTCGTA
CTGTCTGTACTGTACAAGTGTACTTCGAAGTACTTCGAAGTACGAGGACT
TGATTTGTGCCTCCTGAGCCTTCAACCGCTGGACCCTACCACCGTCTGAT
AAGTGCTGTACCCGGGGTCGGAGCCTTCCACCCCGCCGGTCCCTAACTTA
CCACCGTCTGACGAGTGCTGTGTACCGGCACGTGGAGCACGGGTGTACTG
TCCGTACTGTCTGTAGTGTACAAGTGTACCAGTACTTGATTTTGTGCCTC
CTGAGCCTTCGACCCCACCGGACCCTACCACCGTCTGACGAGTGCCGTAA
CCCGGGTCGGAGCCTTCGACCCCACCGGACCCTACCGCCGTCTGACCAGT
GCTGTGCCGGCACGCGGAGCACGGGTGTACTCGTACTGTCTGTGCTGTAC
AAGTGTACGAGTACGAGTCTTGATTTGTGCCTCGTGACACTTGGCGCAGG
GTAGACAAGGACTCTGTCCAGTGCCCTTCTTCCTCTTCTTCTTCTTCTTG
TTCGCCTGCAGGCGGTGGCCTTTTGCTCGTTTGTTTGCAGCCCTGCGGCG
GCGTCCTACAGTACAAAGTCCCACTGTTGTTGAGGCCCTGTTTGGCG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2434277..2440023-

>mRNA_S-ischiensis_contig11.2271.1 ID=mRNA_S-ischiensis_contig11.2271.1|Name=mRNA_S-ischiensis_contig11.2271.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1500bp|location=Sequence derived from alignment at S-ischiensis_contig11:2434277..2440023- (Schizocladia ischiensis KU_0333)
ATGGGTGATGTGAAGTACTGGGATGGAAACTATGGAAAGACCCTGGATGA
TCTCGAGGGCCATGTGTCCGCGGCGGAGAGGGGTTCCGGGGAACAGCGGG
ACGACAGCATCGGGGCGGCGACGCAGACCGTACGACGACTGCAGGGGATC
AAGCGCAGCTACAACCTGGAGATCAAGCTCATGCGGGACCCCGCGACCAA
GGGACACTACGCGAACGCCAAAGCGGAGAAAGACGGTCGCCTAGAGGAGC
TGGTTGCCAGGCTGGAAGCCGCCAAGATGGGTGATGTGAAGTACTGGGAT
GGAAACTATGGAAAGACCCTGGATGATCTCGAGGGCCATGTGTCCGCGGC
GGAGAGGGGTTCCGGGGAACAGCGGGACGACAGCATCGGGGCGGCGACGC
AGACCGTACGACGACTGCAGGGGATCAAGCGCAGCTACAACCTGGAGATC
AAGCTCATGCGGGACCCCGCGACCAAGGGACACTACGCGAACGCCAAAGC
GGAGAAAGACGGTCGCCTAGAGGAGCTGGTTGCCAGGCTGGAAGCCGCCA
AGGGCGCGGACTCGGGGCAACGGAGCGAGCTGTTTAGCGGGCGGACGGAG
GCAGCCGGGGCGGGGGGCGCGGCGGCGGCGGCGGCGGCGGCGGGCGCTGG
GGGCAGGCCGACGCCGGAGCAGAAGCTGGACCAGGCGGACAGGATACAGG
ATAAGACCGAGGCTGCATACCAGGGCGCGGACTCGGGGCAACGGAGCGAG
CTGTTTAGCGGGCGGACGGAGGCAGCCGGGGCGGGGGGCGCGGCGGCGGC
GGCGGCGGCGGCGGGCGCTGGGGGCAGGCCGACGCCGGAGCAGAAGCTGG
ACCAGGCGGACAGGATACAGGATAAGACCGAGGCTGCATACCAGAATATG
ATCCAGGTGCTGGGGGACTCCGAGGCGGTGGCCGCCGACACCGCGCAAGA
GCTCCGGGACCAGCGGGACCAAATCAACCGGGTCACGGAGGATGTGATCG
AGATCGACTCCCTGCTCGGACGTGCGGACAAGCTCGTCAAGGTCTTCTCC
AAGCGCATGATGACCGACAAGAATATGATCCAGGTGCTGGGGGACTCCGA
GGCGGTGGCCGCCGACACCGCGCAAGAGCTCCGGGACCAGCGGGACCAAA
TCAACCGGGTCACGGAGGATGTGATCGAGATCGACTCCCTGCTCGGACGT
GCGGACAAGCTCGTCAAGGTCTTCTCCAAGCGCATGATGACCGACAAGTT
CATCCAGTGCTTTGGGTGCCTCAACGTGCTGGTCCTGGTGTCCATAGTCA
TCTACGTGGTGGTGGACAACGTGGGTCTGCCCGGTTCGGAGCCTTCAACT
CCTCCGGACCCTACCACCGTCTGATTCATCCAGTGCTTTGGGTGCCTCAA
CGTGCTGGTCCTGGTGTCCATAGTCATCTACGTGGTGGTGGACAACGTGG
GTCTGCCCGGTTCGGAGCCTTCAACTCCTCCGGACCCTACCACCGTCTGA
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