mRNA_S-ischiensis_contig11.2256.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2256.1
Unique NamemRNA_S-ischiensis_contig11.2256.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Match: A0A6H5KEX8_9PHAE (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=A0A6H5KEX8_9PHAE)

HSP 1 Score: 218 bits (555), Expect = 7.100e-61
Identity = 136/279 (48.75%), Postives = 165/279 (59.14%), Query Frame = 1 
Query:  190 AGLQVVTLDATGTFMQLKEDTGRQYLDVLETHLEDPDVALRG-VTADGVAAAFMAGIRERCKTLPCFGAGVMSSEDWWKGVVTEAFVGAGVSEEVLDXXXXXXXXXXXXXX--------------------FTGEQGWELVPGARNVLEDLKAW-RNGGGPRALGVVSNFDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHAGL---GEGSA-GVHVGDTWKNDVVGARAAGWKAVLIATGEP--TEQEREVEH-VRVERFTDVPSVL 939
            AG  VV LD TGT M++K    R YL VLE  L   +  L   V+   +  +F A ++ R K LPCFG GVMSSEDWW  VV   F GAGVS+E L           XXXX                    FT    WELVPGA  VLEDL+AW    GGPRALG VSNFDERLHPLL+ LGV+++FDF++TSRE G EKP P +F +AL  AG    G+G   GV VGDT++ DV+GAR+ GW AVLI  G+   TE+E++  H  RV+    VP+ L
Sbjct:   35 AGPDVVCLDCTGTIMRIKGSMPRLYLGVLEDRLGVSEGGLPDKVSEQDLLNSFRASLKRRSKELPCFGTGVMSSEDWWAEVVMATFRGAGVSDETLGISQEGDRGGGXXXXXXXXXGRVFDDVFDRLFHDVFTSTTAWELVPGAEEVLEDLRAWVGEAGGPRALGAVSNFDERLHPLLKNLGVYESFDFVLTSRECGSEKPEPHMFHEALKRAGSSGGGDGDGRGVIVGDTFRTDVLGARSVGWDAVLITRGKDPATEEEQDTTHYARVDDLRGVPAAL 313
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BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Match: A0A8J5XU42_DIALT (Uncharacterized protein n=1 Tax=Diacronema lutheri TaxID=2081491 RepID=A0A8J5XU42_DIALT)

HSP 1 Score: 160 bits (404), Expect = 9.640e-40
Identity = 105/272 (38.60%), Postives = 137/272 (50.37%), Query Frame = 1 
Query:  199 QVVTLDATGTFMQLKEDTGRQYLDVLETHLEDPDVA---------LRGVTADGVAA--AFMAGIRERCKTLPCFGAGVMSSEDWWKGVVTEAFVGAGVSEEVLDXXXXXXXXXXXXXXFTGEQGWELVPGARNVLEDLKAWRNG--GGPRALGVVSNFDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHAGLGEGSAG----VHVGDTWKNDVVGARAAGWKAVLIATGEPTEQ--------EREVEHVRVERFTDVPSVL 939
            ++VT DATGT M+++   G  Y D L + L    +A         L     D VA   AF      +C   PCFGAG +SS DWW  VV EAFVGAGVSE V+               F     WEL+  +  V++ L  WR     G   +GV+SNFD+RL  LL +LG+   FDF++TSRE G EKP   IF +A   AGL          VHVGDT+  DV+GA  AGW+AV +A+ +   +          E EH R+     VP ++
Sbjct:   11 RLVTFDATGTLMRVQRPVGAIYRDALISSLSASKLARTADLSAAELAACNVDPVAIGRAFGRAYAAQCAAHPCFGAGSLSSRDWWSSVVREAFVGAGVSEAVV-RAEMPLLFPTLYESFASTATWELLDASAGVVQQLARWRAQLPPGELTIGVISNFDDRLPALLNSLGLGRYFDFVLTSREHGDEKPCRSIFERASERAGLATVDVSPRTCVHVGDTFGTDVLGASRAGWRAVFVASDDALGELMPEAFVAMAETEHERIPSLGFVPRIV 281
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BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Match: A0A7S2STH1_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2STH1_9STRA)

HSP 1 Score: 159 bits (402), Expect = 5.750e-39
Identity = 95/224 (42.41%), Postives = 123/224 (54.91%), Query Frame = 1 
Query:  199 QVVTLDATGTFMQLKEDTGRQYLDVLETHLEDPDVALRGVTADGVAAAFMAGIRERCKTLPCFGAGV-MSSEDWWKGVVTEAFVGAGVSEEVLDXXXXXXXXXXXXXXFTGEQGWELVPGARNVLE---DLKAWRNGGGPRALGVVSNFDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHAGLGEGSAGVHVGDTWKNDVVGARAAGWKAVLI 858
            +VVT DATGT MQL E  G  Y + L   L+     LR  + D   AAF    + + +  PCFG G  M S DWW  VV + ++  GV E++LD              F G +GWEL   A  VL+   +LK  R    P  LGV+SNFDERLH LL  LG+   FD ++TS+E  VEKP+  IF  AL+  G+ + S  VH+GDT+  DV GA  AGW A+ +
Sbjct:  102 RVVTFDATGTLMQLTEPVGMHYREAL---LQAS--GLRLPSPDHFDAAFKEVYKAQSEEFPCFGCGAAMPSRDWWYPVVRDTYLKTGVPEKILDPLLPEIFDSLYDNVFAGSEGWELNEQAIYVLDTLIELKESRAEDDPLYLGVISNFDERLHKLLDNLGIAHYFDIVLTSKECCVEKPNSPIFDMALSRLGIYDRSRAVHIGDTFDKDVAGAARAGWNAIFV 320
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BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Match: A0A7S2PCP1_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus danicus TaxID=163516 RepID=A0A7S2PCP1_9STRA)

HSP 1 Score: 142 bits (358), Expect = 5.580e-33
Identity = 86/228 (37.72%), Postives = 117/228 (51.32%), Query Frame = 1 
Query:  199 QVVTLDATGTFMQLKEDTGRQYLDVLETHLEDPDVALRGVTADGVAAAFMAGIRERCKTLPCFGAGV-MSSEDWWKGVVTEAFV-------GAGVSEEVLDXXXXXXXXXXXXXXFTGEQGWELVPGARNVLEDLKAWRNGGGPRALGVVSNFDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHAGLGEGSAGVHVGDTWKNDVVGARAAGWKAVLI 858
            Q++T DAT T +QLK + G  Y  +L    E      R  T     +AF     E  +  PCFG G+ M+S +WW       +          G+ + +                F   + WEL PG  + L   K WR  GGP+ L V+SNFDERLH +L  +GV DAFDF++TSRE G EKP+   F  A++ AG+ + S  +HVGD + +DVVGA  AGW +V I
Sbjct:   90 QLITFDATDTLIQLKSEVGMTYRLILH---EATRFRSRLPTPAVFTSAFNQAFTETNEKYPCFGCGLGMTSREWWAECTKRTYALVEHIDYERGLRDRMDGPLGDAVAEVLYNQVFASTEAWELKPGVLDALSRFKMWREEGGPQ-LAVLSNFDERLHSILDQVGVADAFDFVLTSREIGSEKPNRSAFEVAMSRAGVADPSLCMHVGDGFDSDVVGASNAGWHSVWI 313
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BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Match: A0A0G4EP53_VITBC (Uncharacterized protein n=1 Tax=Vitrella brassicaformis (strain CCMP3155) TaxID=1169540 RepID=A0A0G4EP53_VITBC)

HSP 1 Score: 132 bits (331), Expect = 3.530e-30
Identity = 86/254 (33.86%), Postives = 119/254 (46.85%), Query Frame = 1 
Query:  202 VVTLDATGTFMQLKEDTGRQYLDVLETHLEDP---DVALRGVTADGVAAAFMAGIRERCKTLPCFGAGV-MSSEDWWKGVVTEAFVGAGVSEEVLDXXXXXXXXXXXXXX-------FTGEQGWELVPGARNVLEDLKAWRNGGGPR---ALGVVSNFDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHAGL--------GEGSAG-------------VHVGDTWKNDVVGARAAGWKAVLI 858
            +VTLD TGT    +   G  YL  L  HL +    +  L  + AD +  AFM   + +    P FGA   +SS +WW+ VV   ++  GV   +L                      F GE+GW L+P    VL+ L +WR   G      +GV+SNFDER    L   G+   FDF++ SRE GVEKP P+IF  A+  A          GE ++              VH+GD+++ D+VGA  AGW  VL+
Sbjct:   24 LVTLDVTGTLFTPRIPVGESYLLALREHLPEGSGWERHLEELDADALTTAFMKAYKAKSAEHPAFGAATNLSSVEWWRDVVRHTYIHGGVDPALLQHEDGGSSGYFDRVFADLYYDVFVGERGWALLPNTHEVLQALSSWRGSLGADERPVMGVISNFDERATEALARFGLLQYFDFVLLSREQGVEKPHPQIFQSAVEEARRVRQQWTKEGEPASPSSSSCVGVDRTTHVHIGDSFERDIVGATQAGWSGVLV 277
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BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Match: A0A7R9U3B9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3B9_9STRA)

HSP 1 Score: 131 bits (330), Expect = 1.780e-28
Identity = 92/245 (37.55%), Postives = 122/245 (49.80%), Query Frame = 1 
Query:  199 QVVTLDATGTFMQLKEDTGRQYLDVLETHLEDPDVALRGVTADGVAAAFMAGIRERCKTLPCFGAGV-MSSEDWWK----GVVTEAFVGAGVS-EEVLDXXXXXXXXXXXXXXFTG-----------EQGWELVPGARNVLEDLKAWRNGGGPRALGVVSNFDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHAGLGEGSAG-------VHVGDTWKNDVVGARAAGWKAVLIA 861
            +++T DATGT MQL+   G  Y D L  H       LR    D  + AF      +CK +PCFG G  ++S DWW+    G     F   GV+ EEV +              F             E  WEL PG   VL++L++  + GG R LGV+SNFD+RL  +L +LG+   FDF++TSREAG EKPS  +F  A    GL    +G       +H GDT   DV GA  AGW++  I+
Sbjct:  279 KLITFDATGTLMQLRSHIGVIYRDTLLEHA----TTLRLPRPDVFSIAFKEAYASQCKAMPCFGCGSGIASFDWWRPVMQGTYDSVFSSFGVTDEEVAEAGGMESKEEVMEMLFQDLYFNIFAKGPPEGMWELRPGVEAVLQNLRSAESCGGLR-LGVLSNFDDRLPGILESLGIAKYFDFVLTSREAGQEKPSQVMFDLARNALGLSADGSGPIETRECLHAGDTLGTDVRGALDAGWQSAFIS 518
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BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Match: A0A433T982_ELYCH (Uncharacterized protein n=1 Tax=Elysia chlorotica TaxID=188477 RepID=A0A433T982_ELYCH)

HSP 1 Score: 117 bits (294), Expect = 6.340e-26
Identity = 83/224 (37.05%), Postives = 110/224 (49.11%), Query Frame = 1 
Query:  196 LQVVTLDATGTFMQLKEDTGRQYLDVLETHLEDPDVALRGVTADGVAAAFMAGIRERCKTLPCFGAGV-MSSEDWWKGVVTEAFVGAGVSEEVLDXXXXXXXXXXXXXXFTGEQGWELVPGARNVLEDLKAWRNGGGPRALGVVSNFDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHAGLGEGSAGVHVGDTWKNDVVGARAAGWKAVLIAT 864
            L++VTLD T T +++    GRQY  V   H    D AL       +   F    +   K  P FGA V MS+ +WW  VV + F     S   LD              +   + W+ +PGA + L DL  +     P  LGVVSN+D RL+ +L  +G+   FDF+I S   GVEKP  RIF  AL  A   E    +H+GD+ K D+ GAR AGW   L+AT
Sbjct:    7 LKLVTLDITNTLLKVAGSPGRQYGIVGRRHGIFTDEAL-------LTDLFSKYYKHYLKQYPNFGAYVKMSANEWWSYVVKDCFHTVDPS---LDEEKLQIIANDLFTHYMKSEAWQFLPGAVDALNDLHRY-----PVKLGVVSNWDHRLYRVLAVMGLERYFDFVIPSYVVGVEKPDKRIFQLALQDANC-EPDEAIHLGDSIKKDLEGARQAGWGGYLLAT 214
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BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Match: A0A8D8W937_9HEMI (Rhythmically expressed gene 2 protein n=1 Tax=Cacopsylla melanoneura TaxID=428564 RepID=A0A8D8W937_9HEMI)

HSP 1 Score: 110 bits (276), Expect = 1.680e-23
Identity = 71/221 (32.13%), Postives = 110/221 (49.77%), Query Frame = 1 
Query:  199 QVVTLDATGTFMQLKEDTGRQYLDVLETHLEDPDVALRGVTADGVAAAFMAGIRERCKTLPCFGAGVMSSEDWWKGVVTEAFVGAGVSEEVLDXXXXXXXXXXXXXXFTGEQGWELVPGARNVLEDLKAWRNGGGPRALGVVSNFDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHAGLGEGSAGVHVGDTWKNDVVGARAAGWKAVLIA 861
            +++T D TGT ++ +   G QY+   ET  +   V    + A+ V  +F+   +   +  P FG+G +  + WW+ VV+  F+        L               ++   GW+L  GA  +LE L + RN      LGVVSNFD RLH LL+ + ++  F F+ITS E+G+ KP P+IF  A + A        +H+GD +  D   A   GW A+LI+
Sbjct:    6 KLITFDVTGTLLRFRRTAGEQYV---ETGKKFGHV----LNANEVQNSFVKHYKVYDRAYPNFGSGSIGWQQWWRNVVSSCFIETYNGPGQLSESDIDKFFNDLIKSYSDNTGWKLAEGATELLEMLHS-RN----IMLGVVSNFDARLHNLLKEMKLYHYFKFVITSYESGLVKPDPKIFKLAESLASSSPSDIKIHIGDNFDLDYKAALDVGWNALLIS 214
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BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Match: A0A8C5R5J3_9ANUR (Haloacid dehalogenase-like hydrolase domain-containing protein 3 n=1 Tax=Leptobrachium leishanense TaxID=445787 RepID=A0A8C5R5J3_9ANUR)

HSP 1 Score: 108 bits (271), Expect = 6.000e-23
Identity = 82/239 (34.31%), Postives = 114/239 (47.70%), Query Frame = 1 
Query:  196 LQVVTLDATGTFMQLKEDTGRQYLDVLETHLEDPDVALRGVTADGVA--AAFMAGIRERCKTLPCFGAGV-MSSEDWWKGVVTEAFVGAGVSEEVLDXXXXXXXXXXXXXXFTGEQGWELVPGARNVLEDLKAWRNGGGPRALG----VVSNFDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHAGLGEGSAGVHVGDTWKNDVVGARAAGWKAVLIATGEPTEQERE 891
            L+ +T D   T ++ +   G+QY      H E      RG+  D  A  A+F    R      P +G    +SS  WW  VV+++F  +GV+    D              F+    WE++PGAR  L          G R+LG    V+SNFD RL  +LR   +H  F+F++TS  AG+ KP P IF KAL+ A + E S   HVGD + ND   AR  G ++ LI TG  T  E +
Sbjct:    3 LKFLTWDVKDTLLRTRLPVGQQY------HAE---AMKRGLRVDPAALEASFRQAYRTHSHLFPNYGLTQGLSSRQWWLDVVSQSFRLSGVA----DDQSILPMAENLYRDFSTASNWEVLPGAREAL---------AGCRSLGLRMAVISNFDRRLDEVLRCCDLHGHFEFVVTSESAGIAKPHPGIFHKALSLAKV-EPSEAAHVGDDYVNDYRAARDVGMQSYLIWTGRGTRPEEQ 218
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BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Match: UPI001ED8944B (haloacid dehalogenase-like hydrolase domain-containing protein 3 n=1 Tax=Ischnura elegans TaxID=197161 RepID=UPI001ED8944B)

HSP 1 Score: 109 bits (273), Expect = 7.190e-23
Identity = 91/255 (35.69%), Postives = 119/255 (46.67%), Query Frame = 1 
Query:  160 AAPKMMAAEAAGLQVVTLDATGTFMQLKEDTGRQYLDVLETHLEDPDVALRGVTADGVAAAFMAGIRERCKTL----PCFGAGV-MSSEDWWKGVVTEAFVGA-----------GVSEEVLDXXXXXXXXXXXXXXFTGEQGWELVPGARNVLEDLKAWRNGGGPRALGVVSNFDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHA-----GLGEGSAGVHVGDTWKNDVVGARAAGWKAVLIA 861
            A P + AA A  L+VVT D TGT +  +    +QY             A  GV A+    A   G R++ K L    P FGA   +    WW  +V + F+ A           G S E+                ++  + W +V GA N L  L+  + G     LGVVSNFD RLH LLR++G+ D F F + S E GV KP  RIF +AL  A     G  E     HVGDT  +D VGA+ AGW AVL++
Sbjct:    2 AVPSLPAAVARQLRVVTFDITGTLLNFRHPPEQQYSQA---------GAQMGVYAEPSELA--KGFRKQWKILSDQHPNFGAATGLPWHSWWSKLVVQTFLSAPSLRFEDSRVKGNSRELR----LETLADHLIEAYSSAECWSVVEGAENTLSSLR--KEG---LVLGVVSNFDCRLHGLLRSVGLQDFFSFTMVSYELGVAKPDARIFHQALRRAEEYLEGPLEPQEACHVGDTPSSDYVGAKGAGWHAVLVS 236
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2256.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
A0A6H5KEX8_9PHAE7.100e-6148.75Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A8J5XU42_DIALT9.640e-4038.60Uncharacterized protein n=1 Tax=Diacronema lutheri... [more]
A0A7S2STH1_9STRA5.750e-3942.41Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S2PCP1_9STRA5.580e-3337.72Hypothetical protein n=1 Tax=Leptocylindrus danicu... [more]
A0A0G4EP53_VITBC3.530e-3033.86Uncharacterized protein n=1 Tax=Vitrella brassicaf... [more]
A0A7R9U3B9_9STRA1.780e-2837.55Hypothetical protein (Fragment) n=1 Tax=Pinguiococ... [more]
A0A433T982_ELYCH6.340e-2637.05Uncharacterized protein n=1 Tax=Elysia chlorotica ... [more]
A0A8D8W937_9HEMI1.680e-2332.13Rhythmically expressed gene 2 protein n=1 Tax=Caco... [more]
A0A8C5R5J3_9ANUR6.000e-2334.31Haloacid dehalogenase-like hydrolase domain-contai... [more]
UPI001ED8944B7.190e-2335.69haloacid dehalogenase-like hydrolase domain-contai... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2284772..2292059 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score223.0
Seed ortholog evalue1.9e-55
Seed eggNOG ortholog2880.D8LT61
Preferred nameHDHD3
KEGG koko:K07025,ko:K11853
GOsGO:0003674,GO:0003824,GO:0006793,GO:0006796,GO:0008150,GO:0008152,GO:0009987,GO:0016311,GO:0016787,GO:0016788,GO:0016791,GO:0042578,GO:0044237
EggNOG free text desc.N-acylneuraminate-9-phosphatase activity
EggNOG OGsCOG1011@1,KOG3085@2759
EC3.4.19.12
COG Functional cat.P
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko01000,ko01002,ko04121
Hectar predicted targeting categorysignal peptide
Ec32 ortholog descriptionhaloacid dehalogenase-like hydrolase
Ec32 orthologEc-12_005370.1
Exons4
Model size2445
Cds size924
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2256.1prot_S-ischiensis_contig11.2256.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2286361..2292029 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.7801955-UTR-S-ischiensis_contig11:2284771..22855381622815609.7801955-UTR-S-ischiensis_contig11:2284771..2285538Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2284772..2285538 -
1695739801.6567066-UTR-S-ischiensis_contig11:2284771..22855381695739801.6567066-UTR-S-ischiensis_contig11:2284771..2285538Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2284772..2285538 -
1622815609.7923265-UTR-S-ischiensis_contig11:2285636..22863601622815609.7923265-UTR-S-ischiensis_contig11:2285636..2286360Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2285637..2286360 -
1695739801.6713767-UTR-S-ischiensis_contig11:2285636..22863601695739801.6713767-UTR-S-ischiensis_contig11:2285636..2286360Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2285637..2286360 -
1622815609.8348446-UTR-S-ischiensis_contig11:2292029..22920591622815609.8348446-UTR-S-ischiensis_contig11:2292029..2292059Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2292030..2292059 -
1695739801.71428-UTR-S-ischiensis_contig11:2292029..22920591695739801.71428-UTR-S-ischiensis_contig11:2292029..2292059Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2292030..2292059 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815609.8022103-CDS-S-ischiensis_contig11:2286360..22866931622815609.8022103-CDS-S-ischiensis_contig11:2286360..2286693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2286361..2286693 -
1695739801.683197-CDS-S-ischiensis_contig11:2286360..22866931695739801.683197-CDS-S-ischiensis_contig11:2286360..2286693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2286361..2286693 -
1622815609.8134725-CDS-S-ischiensis_contig11:2290597..22906661622815609.8134725-CDS-S-ischiensis_contig11:2290597..2290666Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2290598..2290666 -
1695739801.6920998-CDS-S-ischiensis_contig11:2290597..22906661695739801.6920998-CDS-S-ischiensis_contig11:2290597..2290666Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2290598..2290666 -
1622815609.8239517-CDS-S-ischiensis_contig11:2291507..22920291622815609.8239517-CDS-S-ischiensis_contig11:2291507..2292029Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2291508..2292029 -
1695739801.7036462-CDS-S-ischiensis_contig11:2291507..22920291695739801.7036462-CDS-S-ischiensis_contig11:2291507..2292029Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2291508..2292029 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2256.1

>prot_S-ischiensis_contig11.2256.1 ID=prot_S-ischiensis_contig11.2256.1|Name=mRNA_S-ischiensis_contig11.2256.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=308bp
MGLGWRMAFRSLKILAAALLAPPRAVLSFRAGTGPHRSLGTTGAAPKMMA
AEAAGLQVVTLDATGTFMQLKEDTGRQYLDVLETHLEDPDVALRGVTADG
VAAAFMAGIRERCKTLPCFGAGVMSSEDWWKGVVTEAFVGAGVSEEVLDP
VIDSVFDELFHEVFTGEQGWELVPGARNVLEDLKAWRNGGGPRALGVVSN
FDERLHPLLRTLGVHDAFDFIITSREAGVEKPSPRIFSKALAHAGLGEGS
AGVHVGDTWKNDVVGARAAGWKAVLIATGEPTEQEREVEHVRVERFTDVP
SVLRMVG*
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mRNA from alignment at S-ischiensis_contig11:2284772..2292059-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2256.1 ID=mRNA_S-ischiensis_contig11.2256.1|Name=mRNA_S-ischiensis_contig11.2256.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=7288bp|location=Sequence derived from alignment at S-ischiensis_contig11:2284772..2292059- (Schizocladia ischiensis KU_0333)
CTTCAGGAGACCGAAGGGGGGCGTCGGGCGATGGGCCTCGGTTGGCGGAT
GGCCTTCCGCTCGTTAAAAATCTTGGCCGCAGCGCTCCTTGCACCACCTA
GGGCGGTTCTCTCATTCCGGGCTGGAACCGGCCCCCATAGAAGTTTGGGG
ACCACCGGGGCGGCCCCGAAAATGATGGCGGCCGAAGCGGCGGGGCTCCA
GGTTGTAACACTCGACGCTACGGGCACATTCATGCAGTTGAAGGAGGACA
CGGGGCGTCAGTACCTGGATGTGCTCGAGACTCATTTGGAGGACCCGGAT
GTGGCACTGCGCGGCGTAACTGCCGACGGCGTGGCGGCTGCTTTCATGGC
CGGCATCCGCGAGCGTTGCAAAACGCTGCCGTGTTTCGGGGCCGGAGTCA
TGTCTTCGGAGGACTGGTGGAAGGGGGTGGTTACAGAAGCGTTCGTCGGC
GCGGGGGTCTCTGAGGAGGTCCTCGATCCCGTCATCGACAGTGTCTTCGA
TGAGCTATTCCACGAGGTCTTCACCGGCGAACAGGGCTGGGAATTGGTTC
CGGTGAGCCTTCCGCGATCGGTGATGCACCTCTCTATTAGGCCGGCTGGT
CCACATCGCGGGCATTTTCGAGCACAGCTTGCCCCGTTGCGCATTGCTAA
AATATCACTGACCGACCAACCGTAGGGCATTTCAGCTTCGTGGAATTCAC
AAGCAATGAGGTTCAAACACTTCTCAAGTGTTTGAGATCCCTTCGACAGA
GAAAAACGTTCGAGCGAGCGTCCCACGGAGCGCGCAAACGCCCAGCCAGC
GGCCGGCAGAAACCAGTTCACGGCACTCCATAGTAATTCCGGAAGTATAC
CGTAAGCACCACGTGAGTACATACGAGTCTATACTTCGAAGTACCACTGT
GTACTTGGGAGTACCCCTAGCCCTAACCACTGTGTACTTGGGAGTACCCC
TAGCCCTAACCCAGCCCGCCAAGACGCACCGCCCCCCCCTCACCGTGCCA
CCATCGACCAAGCATGATAGGGCCCCCCAAGTGTATCTTTTTGTCAGACT
CAATACGCTCTCATGGCCTTCTCCGTCGGTGTTTCTTTCTTTGGAAGCGC
TTTGGAAGCCATTTTTTGCAGCACGACATGCCTCAGTTGCTCTGCACGGT
GCAGACTACTTGTACTTCCCAAGTACTTCCAAGTACCGTGCCATTCTGCT
GGTGCTTCCACGAACGGTCTATTGTGCGCGTGGCGATTCATATAAATTGT
AACGAGGTACAATCGCACGTGTGTGAGATGGACTGTGCTCGCATTAGTAA
TCTATTGTACTTCGTATTACTGTAGTAGTCTATTGTCACATTGTGGGTGT
GGCCTCTCATCCGAGAAGTTGCCCTGCCTTTACCCACGCTCAGGGTGCGA
GAAACGTGCTCGAAGATCTCAAGGCCTGGCGCAACGGCGGGGGGCCCAGG
GCGCTGGGAGTGGTGAGAGCTGTGAGGGGGTGATTCATATACATTGCCCC
TGTTTGTTGCTTCTTTACCTGGTTTATGCCCTGCGAGCCAAGAAGGGCTT
CTGGTGAGGTCCCCACCTTAGGTTGTTGGGACGGATCCCGGAACTCGCAT
GTCAATAAATAAGTCAACAAAATCGTAACTAGGTGCAATCGCATGTGTGT
GAGATTGAGTGCTCGCGCATTAGTGGTGAGAGCTAAGAGGGGGTGTCGGT
CGGGTCACTGAGTGTGTATGAATGCTGTACTACTGTAGTAGATATCACCG
GCTGAGCACTGTATATCCTACTACAGTGCTTGAGTGCGTGCTTGGAAGTA
CAACTGTGCTGCTGTGAGTGTACTGAAATGTCTCTACGTGTACTTACTTT
GAAGGTAATACTTCCGGAAGTACTACTGTACGGTACAATAATTAAGCCTC
ACTCGACTTACCAGGCTTTGTCGGCTAATGCACGTATATATGTACTCACA
CGTTGTGCTTGCCGTAGTCCCGAGACCATTGACCACGCGCCTCGATCGAG
ACGGAGCAGCCCCCGTCCCTCCCCTGGCATGTACGGGTACATATATAAAC
CTTATTATAGTAATCATGCGGAGCGCTGAGCGTGCAGCATTTCCGATGCT
TGCCAGTTCTCTATTCGATTATGGCCCGGGAGCCCTCCGTGTGGGAGACC
TGAAAGTAAGGGGGAGGGGGGGAGCCGTGTCTGCCGCGACGTCCGCACCT
CTCACCCCTGTACCTTTGAAGGTCTCGCACTGAGCCCGCCGCACGGCGAC
ATGAGCTGGCCCCTCTGTAGGGTACCCTCAATCCGCGTTCGCGCCCAAGC
GACCCGCGTTGCGTGCCCGGTGGAGCGAGCATTGCGTTCAACAAGATTGG
GTGCCCCGCGATTCTGCGCGCCTCGCGACGGGATGGCCGTGTTGCGAACG
TAATTGCGCTGCGGCGACCTAACCTTTCGTTCGCAATTGCGCTGCGGCGA
CCCAACCTTTTCCTGCCGTTCAACGCTTGGCCGATTGCCGCGTGTCTCGG
CGTTCTGACGCACCGGCGGGGCTCGGCGTGGCGTGCTCTAGGGGTGTGAG
CGGTGTCCGTTCGCAACATTGCAGCCACCCTATTTTGTACGCCCCGCCAC
GGATGGGCATGCCGCGCATTTAATTTCTCTGCGACGGCCTCACCGTTTTC
CCCGGTTCACGGCACGGCCGGACCGGGGCCGGTGCGCCCGCCTCGGGGCT
TCACGTCGCATCAACGCACTCCGCATCCCGTGCCCTGTGGCGTGAGCATT
GCAGGAACCAGAGGTGTGAGGGGTGTCCGTTCGCAAAATTTGCAGCCACC
CAATTTTTGTACCCCCCGCCACGGATGGGCATGCCGCGCGTTTAATTTCT
CTGCGACGGCCGCATCGCTTTCCCCGGTTCCAGTACGGCCGGTGCGAGAG
CCTCGGGACTTCACGTCGCATCAACGCACTCCGCATCCCGTGCCCTGCCG
CGTCAGCATTGCCGGATATCGTTGAATGCTTCGCGCTCAGCCCTCCCCGC
TCTGCCCGCTGTGAATACCAAGCAACACCTCGGAGCGAAGACAACTTCAA
ACAAGCGAGTGGGACTCCAGGAGAGAAACGGTGTCGGACCCCTACTGTAC
GCGAGTTCAGGGCCCCATCCCCGGCAGCGCTTCCTTTCACCCGCCTTCAC
TCGCACGGCATACAACAGAACAGAAAATAAAGAAAAACAAACAAGGGCTA
TAGCGGGAGAGAATAGCAGTGGCGAATGGGTCATCGGGTCTCTTGTGCCA
AGCGGGACGTGCAGCAGCGACGCCGATGACCGAATCCGTCACGCACCTGA
AAGTGCACGGATGAAGAGTGAGAATGAGAGCGTGCGCAGTACCGTGCACA
CGTGGGTGAGAATGAGAGCGTGCGCAGTACCGTGCACACGTGGGGTGACC
ACGAACATACAGAAACGAGGGAGAGGGAGAAACGACTTCCTACAGCAGTG
GTCACGGCACGTGTGTGCTTGCGGGGCTCATTCACAGAGAGCCGGTGGCA
ATATGACACCTGGAGGAGGCCAAACACTGCCCCTCAGCCCTCTCTTCGAC
GCGGCGCTCACCGGGCGGCGAGGAAAGTGCGCGGCGGTTGGGCGCGTCAC
ATGCCATAGGTGGACATCAGCAGTAATGAATCGTTCAGCCGCATATGCTT
CTTCCTCCCTGCCCACTGATTGGGTCTGCGACACGTCATTATCTCCGCCT
CCTGTGCCACGCTTACTGAAGCGTGCACACTCCGAGCGAGCCCCGAGAGA
CCACACCTCTCACTAGCTACATGTCACAGTGTAGCTATGCGTGTTGCCCC
GCAAACCTTTGCGTGCCCGGGCCTTACGACGCTTACGCCCAGGTTCTTTT
CCTGCTCTTATTTTCGTCTTATCTGCATTCCCCTTTGTCCTTGCAGGGTT
AGCCCCTGAGCACTTCTGTCTTCGCCTGCGCAGCCTTTTATTTTTTTCCC
TGTATATATGTACTACAATATTGGCTTGTCTTGTGACATAGCCTTGCGTG
CATTGCGGACAGCCCCAAGTCAAAACTTCGGGTTTGCCCTCTGACAGGAG
TAGCTGTTTAGACGTGGACTCTCGCATCCCAGTTAAGCCGGGACGGGGCA
TGCCGGGTTTGCCCCGACCAGGCCGCGCACTGGCCGAGCCCGGAATGCCA
TTATGCCTTGGCGGCCGCAAGCCGGATGAGGGGCCGCTCGCTAGACTACG
ACAACGCGTAGGTAGCCGTCGGCGAGCACTTGTGATTCTCTTCGCAGAGT
TGCTCTTGGGCGCACCGGCACCCTAACGGTCACGGGGGAACAATAAGGAT
GATTGTTGATCCCGACCGAATTAAATACTACAGGGTAGGTAGGTCGCCGG
ACAATGCCATATATTCATGCTACAAGCTAATGCACGTGCAAATATAAGTT
TTCACTACAGTACTACAGTACTTCCTCTCCTCCCCTTCCCCACACCACTT
TCCCCTGGCGAGCTGTAAGGAATGGCCACTGCTGATGTCTTTAGTGACGT
GGCCCGCACCTCGCCTTGTGTTGTTCCTGATAGTACTCGTACTTCAGTAG
AGCTACACCTACAAGTAGCACAGTATTTACTGTAGGCGGGCTCCGCAGGG
GGACCGGCAGGCTCAGCCTGAGGCTGGGTGGAGTTGCTCCTTGCTCCCGC
TACGACGGTGATTCATATAAATTGTAAAGAGGTACAATCGCTACGACGGT
GGTGGTCGCGCGCTGCGGGGCCAAGACCCCGGGGGCCGCAAGCGGCAGCC
GCCGCTGGGGGCGTCAGTCCTGTACTTCGAAGTACTACTGCAGAGTATGT
TCGTACGTACTTCGAAGAAATGCTACACTGAATATCTCTGCACAGTAGCC
GCCTCCGCCCCCCAAGGGGAGGCGCGCGGTCAAGCGTCTCTGGGCTAGCC
AGGCACGAGGGTGACTAGGTACGCAATTGCCTGGAAGCATACCTGCTGTA
GTTGTGTGTACTATGTAGGTAGTATGTATGGGCTCTGGTGCTGGTTGTTG
TGACGGCCGCACCACTCGTGGCAACTTACCCACGAACCACCCGTGTTCAA
CCTGCTTGACCCGATCACCACCCCCCCCGCCTATTGTACCAGCTCTGCTC
CCCCAATCTCTCTCCGCCCCTCCCTCCGTCCATCCCCCCCCTCTCCCCCT
TCCGCCATGCATCAATTCATTCGCCTCATGCCCGGCCACCGCCATCGCCA
TCGCCATCGCCGCCAACTATTTCTTGCAAGTACGAGAACAGTCAATCTCA
CACACGTGCGATTGTACCTCGTTCCACTGTATATTAATCATCGCCTGTTG
CCTGGCCGCCGCCATCGCCGCCGTGCCGCCGCCGCCGCCGCCGCCGCCTC
GCGGGGGCCCACCCAGGTCTCCAACTTCGATGAGCGCCTGCACCCGCTGC
TCCGGACCCTGGGCGTGCACGACGCCTTCGACTTCATCATCACCAGCCGG
GAGGCCGGGGTCGAGAAGCCCAGCCCCCGGATATTCAGCAAGGCGCTGGC
TCACGCGGGGCTAGGGGAGGGCAGCGCGGGGGTGCACGTGGGGGACACGT
GGAAGAACGACGTGGTGGGGGCCCGGGCAGCGGGATGGAAGGCGGTGCTG
ATCGCGACGGGGGAGCCCACGGAGCAGGAGCGGGAGGTGGAGCACGTGCG
GGTGGAGAGGTTCACCGACGTGCCCTCTGTCCTCCGGATGGTGGGGTAGT
AGAGTATATACGTAGTATATATGTACTCACGGAGCACAGACGAGGATCGT
TCGGGTCCATCGCATGCAAAGAGACGTGAGTACACACTCACGCGGTGCTT
GCCGTAGTCCCGAGACCATTGACCACGCCCCTCTGTTGAGGCGGAGCAGG
GTCGAGACGGAGCAGGTAGTAGCGGTTAAAAAAATTCTTGTGAGAGGGTA
CAGAGAAGCGGGCGTGATTCGGTAGTCGGCAGTTGTTTGGGCGGGGCAGT
GCACGCCTACGTTGGTTCTCGCCTTTTGATCGATCGATTCGCCTCGTGTG
GTTGCGGCAGGGACGTCGTGAGTGTGCGCCTACGATGGTATGGCTCTGAC
ATGGGTACCGGTACTACAGTACATGTACTGTAGGTGCTGTCCTATGTACT
TCGTAGAGTAGAGCTGCTGTAGTCCATGTATGTACATACGAAGTACTTGG
AAATACGTTGTACTTGGAATTGTACTATTAGTACCGTACTGAAGTACAGT
AGTGCATTGGGATTGCCACATGGTGAACGAACATCCCCAGGTGGCATGGC
GAAGTTTTGGCAATAAGTACCTCGGGATGGCTACGTACTCCATTGTTGCA
AGTACTTGAAGTGCTACAGTATGTACGTTTTTTACTTGTTTAATCTCCCT
TGACACAAGTACAGGGCACTACTGTAATGGCCTCTGCCCACCTTTCTGTC
AATGGCGCGCAGCTGTACTGTAGGTGCTAGCATTGTGCGTGTACAGTATG
CGTGTGTCACAGGGCACTACTGTAATGGCCTCTGCCCACCTTTCTGTCAA
TGGCGCGCAGCTGTACTGTAGGTGCTAGCATTGTGCGTGTACAGTATGCG
TGTGTCTCGATTCGTACTCTACATTAGCAAGTGTGTACAGTCCAGTCGTA
CATCGAAGTACAGTGCAGTACTCGTACAGCATGAACGGGAACAACACAGG
GCGATGTGCAGGCCACGTCTCACTAAAGACCTCAGCAGTGGCCCTTCCTT
ATAGCTCGGCAGGGGAAATTTGTGTGGGGAAGGGGGAGAAAAGCAGGAGG
TACTCGTACAGTAGGTAGGAGGTTGATATTTTCCACTGGCGGTGCACCAG
CCAGAGCCACAGGAGGTACGGTAGCTTTAGGTGTCGCCAGCGGCAAGCGT
GGGACACGTTGCTGACCACGGGCGGGGACGTGCGGCACTGCCTCCCCCCC
CCTCGTGTTCGCGGTTGTAGAGTACAGTACAGCAAGTTTTGAGGCATGAT
AATGCGCCAAGCCATCTTGGAAGCATGGCCGCAGTGCAGCACGCGACTAT
ATGTTGTACGCGCGCTACTGTAGGTGCCGCTGTGTGTGTAGAGTACTGTT
ACTTCCAGTAGTTGCAAATGCGTAAGCTCCAACATATAAGTATAGAATCA
CACCACAAATCACAGTGCTGCCGATACGAGTACTTACCCCAGTACAGCCA
GAACGTAGCCCGGTGGCGCAAAGGAGTGCAAAGTGGCACTACGACCGCCC
GGGCACTACATGTACTTCCGGAAGTACAGTACATGGAGCTGCAATCGAGT
ACTCTACTGCAATTGCATTGTGGCACCCTTGATGTATG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2284772..2292059-

>mRNA_S-ischiensis_contig11.2256.1 ID=mRNA_S-ischiensis_contig11.2256.1|Name=mRNA_S-ischiensis_contig11.2256.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1848bp|location=Sequence derived from alignment at S-ischiensis_contig11:2284772..2292059- (Schizocladia ischiensis KU_0333)
ATGGGCCTCGGTTGGCGGATGGCCTTCCGCTCGTTAAAAATCTTGGCCGC
AGCGCTCCTTGCACCACCTAGGGCGGTTCTCTCATTCCGGGCTGGAACCG
GCCCCCATAGAAGTTTGGGGACCACCGGGGCGGCCCCGAAAATGATGGCG
GCCGAAGCGGCGGGGCTCCAGGTTGTAACACTCGACGCTACGGGCACATT
CATGCAGTTGAAGGAGGACACGGGGCGTCAGTACCTGGATGTGCTCGAGA
CTCATTTGGAGGACCCGGATGTGGCACTGCGCGGCGTAACTGCCGACGGC
GTGGCGGCTGCTTTCATGGCCGGCATCCGCGAGCGTTGCAAAACGCTGCC
GTGTTTCGGGGCCGGAGTCATGTCTTCGGAGGACTGGTGGAAGGGGGTGG
TTACAGAAGCGTTCGTCGGCGCGGGGGTCTCTGAGGAGGTCCTCGATCCC
GTCATCGACAGTGTCTTCGATGAGCTATTCCACGAGGTCTTCACCGGCGA
ACAGGGCTGGGAATTGGTTCCGATGGGCCTCGGTTGGCGGATGGCCTTCC
GCTCGTTAAAAATCTTGGCCGCAGCGCTCCTTGCACCACCTAGGGCGGTT
CTCTCATTCCGGGCTGGAACCGGCCCCCATAGAAGTTTGGGGACCACCGG
GGCGGCCCCGAAAATGATGGCGGCCGAAGCGGCGGGGCTCCAGGTTGTAA
CACTCGACGCTACGGGCACATTCATGCAGTTGAAGGAGGACACGGGGCGT
CAGTACCTGGATGTGCTCGAGACTCATTTGGAGGACCCGGATGTGGCACT
GCGCGGCGTAACTGCCGACGGCGTGGCGGCTGCTTTCATGGCCGGCATCC
GCGAGCGTTGCAAAACGCTGCCGTGTTTCGGGGCCGGAGTCATGTCTTCG
GAGGACTGGTGGAAGGGGGTGGTTACAGAAGCGTTCGTCGGCGCGGGGGT
CTCTGAGGAGGTCCTCGATCCCGTCATCGACAGTGTCTTCGATGAGCTAT
TCCACGAGGTCTTCACCGGCGAACAGGGCTGGGAATTGGTTCCGGGTGCG
AGAAACGTGCTCGAAGATCTCAAGGCCTGGCGCAACGGCGGGGGGCCCAG
GGCGCTGGGAGTGGGTGCGAGAAACGTGCTCGAAGATCTCAAGGCCTGGC
GCAACGGCGGGGGGCCCAGGGCGCTGGGAGTGGTCTCCAACTTCGATGAG
CGCCTGCACCCGCTGCTCCGGACCCTGGGCGTGCACGACGCCTTCGACTT
CATCATCACCAGCCGGGAGGCCGGGGTCGAGAAGCCCAGCCCCCGGATAT
TCAGCAAGGCGCTGGCTCACGCGGGGCTAGGGGAGGGCAGCGCGGGGGTG
CACGTGGGGGACACGTGGAAGAACGACGTGGTGGGGGCCCGGGCAGCGGG
ATGGAAGGCGGTGCTGATCGCGACGGGGGAGCCCACGGAGCAGGAGCGGG
AGGTGGAGCACGTGCGGGTGGAGAGGTTCACCGACGTGCCCTCTGTCCTC
CGGATGGTGGGGTAGGTCTCCAACTTCGATGAGCGCCTGCACCCGCTGCT
CCGGACCCTGGGCGTGCACGACGCCTTCGACTTCATCATCACCAGCCGGG
AGGCCGGGGTCGAGAAGCCCAGCCCCCGGATATTCAGCAAGGCGCTGGCT
CACGCGGGGCTAGGGGAGGGCAGCGCGGGGGTGCACGTGGGGGACACGTG
GAAGAACGACGTGGTGGGGGCCCGGGCAGCGGGATGGAAGGCGGTGCTGA
TCGCGACGGGGGAGCCCACGGAGCAGGAGCGGGAGGTGGAGCACGTGCGG
GTGGAGAGGTTCACCGACGTGCCCTCTGTCCTCCGGATGGTGGGGTAG
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