mRNA_S-ischiensis_contig11.2213.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2213.1
Unique NamemRNA_S-ischiensis_contig11.2213.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2213.1 vs. uniprot
Match: A0A7S1TUY5_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1TUY5_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 7.990e-6
Identity = 27/58 (46.55%), Postives = 38/58 (65.52%), Query Frame = 2 
Query:  263 EIRASSLYVGQSKYSELQSKLEVEY---GCGLVVSYRDREGDEVAIRSQGDLELALLQ 427
            EIRA +L   ++++   + +L ++Y   G G+ V YRD EGDEVAIRS GDL  AL +
Sbjct:   61 EIRAGALAARRTRFRSFRRRLRLDYPGAGAGIAVFYRDEEGDEVAIRSDGDLRYALAE 118
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2213.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
A0A7S1TUY5_9STRA7.990e-646.55Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2032703..2034377 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size495
Cds size351
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2213.1prot_S-ischiensis_contig11.2213.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2032703..2034235 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.6999617-CDS-S-ischiensis_contig11:2032702..20328791622815578.6999617-CDS-S-ischiensis_contig11:2032702..2032879Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2032703..2032879 -
1695739782.1975558-CDS-S-ischiensis_contig11:2032702..20328791695739782.1975558-CDS-S-ischiensis_contig11:2032702..2032879Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2032703..2032879 -
1622815578.7131488-CDS-S-ischiensis_contig11:2034061..20342351622815578.7131488-CDS-S-ischiensis_contig11:2034061..2034235Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2034062..2034235 -
1695739782.2127063-CDS-S-ischiensis_contig11:2034061..20342351695739782.2127063-CDS-S-ischiensis_contig11:2034061..2034235Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2034062..2034235 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.7269192-UTR-S-ischiensis_contig11:2034235..20343771622815578.7269192-UTR-S-ischiensis_contig11:2034235..2034377Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2034236..2034377 -
1695739782.2235558-UTR-S-ischiensis_contig11:2034235..20343771695739782.2235558-UTR-S-ischiensis_contig11:2034235..2034377Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2034236..2034377 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2213.1

>prot_S-ischiensis_contig11.2213.1 ID=prot_S-ischiensis_contig11.2213.1|Name=mRNA_S-ischiensis_contig11.2213.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=117bp
MGCKETFPPNQTEGMEASPIATESSWNANRMVKVKWCHGTEIRASSLYVG
QSKYSELQSKLEVEYGCGLVVSYRDREGDEVAIRSQGDLELALLQGREDQ
AEGARKGLPARSLRIIL
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mRNA from alignment at S-ischiensis_contig11:2032703..2034377-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2213.1 ID=mRNA_S-ischiensis_contig11.2213.1|Name=mRNA_S-ischiensis_contig11.2213.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1675bp|location=Sequence derived from alignment at S-ischiensis_contig11:2032703..2034377- (Schizocladia ischiensis KU_0333)
CGTGCATGAGAGAGCGCCGGGGGGGGAACGTTGGCAAGAGGTCATCAGCT
ATTTGGCAATTTAGAGGGCAAAAGCATGCCCTCCGCATCCGTGGCATCCA
CTCTAATGTGTTGCGCATAGTGCCGTGCATGTACTGGGGGGCATGGGCTG
CAAAGAAACCTTCCCCCCAAACCAGACGGAAGGGATGGAGGCATCGCCAA
TCGCTACAGAGAGTTCCTGGAACGCCAATCGCATGGTCAAAGTGAAATGG
TGTCATGGCACCGAGATCCGGGCGTCGTCTCTCTACGTGGGCCAGTCCAA
GTACTCGGAGCTGCAGGTGGGAAGTGAAATGCAAGGCCCGTTTTGCTGAA
GAGCTATGCGTGCGAAACACGGCCACACCCTCGCCCCGGGGGGCGGCCGG
CAACCGGCAGGCCCTACTTGCCTACTCGCGCGTGTTGTGTCCTCTCGGTG
CACTGCTCGTGCCTCCGGCAGTGTTTGTGGTGCACACACGGCCCTGCAGT
CGTTCATCTGCCCATTCGGCGCAGATGTGTGTGACCTTGTGTCGCTGCTG
TGGGATTCTCTTCTTGTTTCTTTAAACGCCTTTTTTGCTGCGGAGGTCTC
CATCCGAACCATTGCACGCGCGTTAGTTCCGTCCGGCAAGTGATTTGCCT
GGTGACATCAGTCACGGATAAAAGAACATGCAAGAGTCGAAACACATATG
GAGGGCTGGTGAAGAGGCCTTCCCCGCTGATCAATTTTTATCTCTTCTCG
GCCGTTTCCGGAGCCCATAACGGTGTCAGAGCTAAAGCGCTGATCTGCAA
GTCACCGGCTCTCAGAGCCACGTTGTGCCACTCGAGTAGACCCGAAAGCG
AGGAGGGGCTACTGCTCTGACACATACTGCTCTGACACAACCCGACCTGT
GGTCACTCTCCTTTCACATCCCTACCCGACCACCCGCCGCTTCTTCTACC
CGTACTTCTTCTTCTTCTTCTGCTGCTGCTGCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCT
TCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTC
TTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTTCTT
CTTCTTCTTCTTCTTCTTCTTCTTCTTCCTCTTGCTCTTCCTCTTCCTCT
TCTTCCTCTTCCCCTTCTTCTTCTTCTGTCCCCCTCTCTCACACACTTAC
GCACACACACATTCCGACCCGACCAGGCTGCCCTTCACATCTCTCCTCTC
AGGACCCGCAGACCCGACCATCGCTTCTTCTTCTCTCCTCCGCCTCCCAC
CTTAATTGGCCATATCTCTCTCTCCTCCTCCTCCTCCTCCTCCTCCTCCT
CCTCCTCCTCCTCCTCCTCCTCCTCCTCCGCCTCTCCTTTTCGCTCAGAG
CAAACTGGAGGTGGAGTATGGCTGCGGCCTGGTCGTGTCCTACCGTGATC
GGGAGGGCGACGAGGTGGCAATAAGGAGCCAAGGGGACTTGGAGCTGGCC
CTGCTGCAGGGGAGGGAGGATCAGGCTGAGGGTGCAAGGAAGGGGCTTCC
TGCCAGGAGTCTTCGGATTATTCTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2032703..2034377-

>mRNA_S-ischiensis_contig11.2213.1 ID=mRNA_S-ischiensis_contig11.2213.1|Name=mRNA_S-ischiensis_contig11.2213.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig11:2032703..2034377- (Schizocladia ischiensis KU_0333)
ATGGGCTGCAAAGAAACCTTCCCCCCAAACCAGACGGAAGGGATGGAGGC
ATCGCCAATCGCTACAGAGAGTTCCTGGAACGCCAATCGCATGGTCAAAG
TGAAATGGTGTCATGGCACCGAGATCCGGGCGTCGTCTCTCTACGTGGGC
CAGTCCAAGTACTCGGAGCTGCAGATGGGCTGCAAAGAAACCTTCCCCCC
AAACCAGACGGAAGGGATGGAGGCATCGCCAATCGCTACAGAGAGTTCCT
GGAACGCCAATCGCATGGTCAAAGTGAAATGGTGTCATGGCACCGAGATC
CGGGCGTCGTCTCTCTACGTGGGCCAGTCCAAGTACTCGGAGCTGCAGAG
CAAACTGGAGGTGGAGTATGGCTGCGGCCTGGTCGTGTCCTACCGTGATC
GGGAGGGCGACGAGGTGGCAATAAGGAGCCAAGGGGACTTGGAGCTGGCC
CTGCTGCAGGGGAGGGAGGATCAGGCTGAGGGTGCAAGGAAGGGGCTTCC
TGCCAGGAGTCTTCGGATTATTCTGAGCAAACTGGAGGTGGAGTATGGCT
GCGGCCTGGTCGTGTCCTACCGTGATCGGGAGGGCGACGAGGTGGCAATA
AGGAGCCAAGGGGACTTGGAGCTGGCCCTGCTGCAGGGGAGGGAGGATCA
GGCTGAGGGTGCAAGGAAGGGGCTTCCTGCCAGGAGTCTTCGGATTATTC
TG
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