mRNA_S-ischiensis_contig11.2207.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2207.1
Unique NamemRNA_S-ischiensis_contig11.2207.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2207.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:2000301..2001536 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons3
Model size645
Cds size555
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2207.1prot_S-ischiensis_contig11.2207.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 2000350..2001495 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.5587564-UTR-S-ischiensis_contig11:2000300..20003491622815578.5587564-UTR-S-ischiensis_contig11:2000300..2000349Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2000301..2000349 +
1695739782.1176033-UTR-S-ischiensis_contig11:2000300..20003491695739782.1176033-UTR-S-ischiensis_contig11:2000300..2000349Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2000301..2000349 +
1622815578.6029935-UTR-S-ischiensis_contig11:2001495..20015361622815578.6029935-UTR-S-ischiensis_contig11:2001495..2001536Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2001496..2001536 +
1695739782.1559756-UTR-S-ischiensis_contig11:2001495..20015361695739782.1559756-UTR-S-ischiensis_contig11:2001495..2001536Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 2001496..2001536 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815578.5716004-CDS-S-ischiensis_contig11:2000349..20004621622815578.5716004-CDS-S-ischiensis_contig11:2000349..2000462Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2000350..2000462 +
1695739782.1302707-CDS-S-ischiensis_contig11:2000349..20004621695739782.1302707-CDS-S-ischiensis_contig11:2000349..2000462Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2000350..2000462 +
1622815578.5825927-CDS-S-ischiensis_contig11:2000571..20008121622815578.5825927-CDS-S-ischiensis_contig11:2000571..2000812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2000572..2000812 +
1695739782.1385458-CDS-S-ischiensis_contig11:2000571..20008121695739782.1385458-CDS-S-ischiensis_contig11:2000571..2000812Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2000572..2000812 +
1622815578.593091-CDS-S-ischiensis_contig11:2001294..20014951622815578.593091-CDS-S-ischiensis_contig11:2001294..2001495Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2001295..2001495 +
1695739782.1470191-CDS-S-ischiensis_contig11:2001294..20014951695739782.1470191-CDS-S-ischiensis_contig11:2001294..2001495Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 2001295..2001495 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2207.1

>prot_S-ischiensis_contig11.2207.1 ID=prot_S-ischiensis_contig11.2207.1|Name=mRNA_S-ischiensis_contig11.2207.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=185bp
MSCSENVKPLLLAGVLAFLAGSFFFSDTFTYGAAVTGWLQHEGYAKALCQ
RRPQDMYDDRCTEDVKRALVPVNLACIGGLRALWLCQEKEKVMGSVPGAQ
GKGKSCKMEQDNFSQCVQLHLRPELQRRGFTEVELAVLDGNRNQGRKKEK
AGRGATKRKKKTVPEPDSGRESGPVLDVETTGDR*
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mRNA from alignment at S-ischiensis_contig11:2000301..2001536+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2207.1 ID=mRNA_S-ischiensis_contig11.2207.1|Name=mRNA_S-ischiensis_contig11.2207.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1236bp|location=Sequence derived from alignment at S-ischiensis_contig11:2000301..2001536+ (Schizocladia ischiensis KU_0333)
TGGAACTCAAGTGGAGAAGTGCACAGCTTCAGGAGGGGCGCGTGGCGCCA
TGAGTTGCTCCGAGAACGTAAAGCCCCTCCTGTTGGCTGGGGTGTTAGCT
TTCCTCGCGGGGAGCTTCTTCTTCAGTGACACATTCACGTACGGTGCAGC
GGTCACGGGATGGTGAGGATCTCGACCGGGACGCCTTCCCCGAACACATG
TCGCAAGCGTGGAGAAGGCGCGTCGCTTACCTTGATCCCGTGCGAACGTA
CCTTGCTCTCGCTCGTAACAGGCTGCAACACGAGGGGTACGCCAAAGCGC
TGTGCCAACGGCGGCCCCAGGACATGTACGACGATCGTTGTACAGAGGAT
GTGAAACGGGCCCTTGTCCCTGTCAACCTCGCCTGCATCGGGGGCTTGAG
AGCACTGTGGCTGTGCCAAGAGAAAGAGAAAGTCATGGGATCTGTGCCGG
GTGCTCAAGGGAAGGGAAAGTCCTGCAAAATGGAACAAGATAACTTCTCT
CAGTGTGTCCAGGTGAGGGGTGCCCTGGAGTTTTCTGTGAGAAGGTCATT
GGACAATCCATGTGGCGGCTTCCAGTGGCCGGTTCCCCTCAGCGAAGCAT
GCCGGCTCAGGTGTGATGAGACCCAAACATCCGTGTGTACATGCATTGCT
GCTTTAGTGCGACTCGTCCTGCTCGCAACTTGTGTTGTTGACAACGCTTC
ACTGATAGTAGTTGTGCATGTTGCCGGGCGCAGTTGCAACGTCAAACTGC
TACATACTTGGAAGTATACGTATATGTACTCACGTCGTGCTTTCCGTAGT
CACGAGACCATTAACGTCAAAACACTTTAATATATACGGTGGAGCTGCCG
GGTCTGCACAGGTATGCTTTGAAGAACATCCTTTCCCCCCACGCCATTCC
GAACCGCGAAGAAAGCACCTAGGACCTCGTAGAAAAATGCCCCCCCTGAC
AGCCTGCCACCCTCCATGCAACATGCCCACTCCGGTCCTGGCAGTTACAC
TTGAGGCCGGAGCTACAACGGAGAGGGTTCACCGAGGTGGAGCTTGCTGT
ACTCGATGGGAATCGCAACCAGGGAAGGAAGAAAGAAAAAGCGGGGCGGG
GCGCGACTAAGCGGAAGAAGAAAACTGTTCCGGAGCCAGACTCCGGTCGC
GAGTCGGGTCCCGTCCTAGATGTTGAGACCACCGGTGATAGATAATGGGG
GCCCTTAAAATGTGAGTATGGTGACTGAGACCAGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:2000301..2001536+

>mRNA_S-ischiensis_contig11.2207.1 ID=mRNA_S-ischiensis_contig11.2207.1|Name=mRNA_S-ischiensis_contig11.2207.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1110bp|location=Sequence derived from alignment at S-ischiensis_contig11:2000301..2001536+ (Schizocladia ischiensis KU_0333)
ATGAGTTGCTCCGAGAACGTAAAGCCCCTCCTGTTGGCTGGGGTGTTAGC
TTTCCTCGCGGGGAGCTTCTTCTTCAGTGACACATTCACGTACGGTGCAG
CGGTCACGGGATGATGAGTTGCTCCGAGAACGTAAAGCCCCTCCTGTTGG
CTGGGGTGTTAGCTTTCCTCGCGGGGAGCTTCTTCTTCAGTGACACATTC
ACGTACGGTGCAGCGGTCACGGGATGGCTGCAACACGAGGGGTACGCCAA
AGCGCTGTGCCAACGGCGGCCCCAGGACATGTACGACGATCGTTGTACAG
AGGATGTGAAACGGGCCCTTGTCCCTGTCAACCTCGCCTGCATCGGGGGC
TTGAGAGCACTGTGGCTGTGCCAAGAGAAAGAGAAAGTCATGGGATCTGT
GCCGGGTGCTCAAGGGAAGGGAAAGTCCTGCAAAATGGAACAAGATAACT
TCTCTCAGTGTGTCCAGGCTGCAACACGAGGGGTACGCCAAAGCGCTGTG
CCAACGGCGGCCCCAGGACATGTACGACGATCGTTGTACAGAGGATGTGA
AACGGGCCCTTGTCCCTGTCAACCTCGCCTGCATCGGGGGCTTGAGAGCA
CTGTGGCTGTGCCAAGAGAAAGAGAAAGTCATGGGATCTGTGCCGGGTGC
TCAAGGGAAGGGAAAGTCCTGCAAAATGGAACAAGATAACTTCTCTCAGT
GTGTCCAGTTACACTTGAGGCCGGAGCTACAACGGAGAGGGTTCACCGAG
GTGGAGCTTGCTGTACTCGATGGGAATCGCAACCAGGGAAGGAAGAAAGA
AAAAGCGGGGCGGGGCGCGACTAAGCGGAAGAAGAAAACTGTTCCGGAGC
CAGACTCCGGTCGCGAGTCGGGTCCCGTCCTAGATGTTGAGACCACCGGT
GATAGATAATTACACTTGAGGCCGGAGCTACAACGGAGAGGGTTCACCGA
GGTGGAGCTTGCTGTACTCGATGGGAATCGCAACCAGGGAAGGAAGAAAG
AAAAAGCGGGGCGGGGCGCGACTAAGCGGAAGAAGAAAACTGTTCCGGAG
CCAGACTCCGGTCGCGAGTCGGGTCCCGTCCTAGATGTTGAGACCACCGG
TGATAGATAA
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