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Homology
BLAST of mRNA_S-ischiensis_contig11.2165.1 vs. uniprot
Match: D7FYK0_ECTSI (SPX domain-containing protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FYK0_ECTSI) HSP 1 Score: 123 bits (309), Expect = 4.970e-29 Identity = 78/199 (39.20%), Postives = 102/199 (51.26%), Query Frame = 1
Query: 193 FFEQLEAEREKIWAFYKGREAWTLLALERTQGGLFKLTVQA-KER----SRDPVGVDA-------------------------ELVELSLRARVSVAVLQAEVDVLCQFTELNLRAFRKILKKHDKWCASREGQRYLGGLLKAHGWLAGGSVHRMSRSVSVMSDHLRDLPPLLPGGGPSSTGGPAGWWDRIVYTVGSFD 699
F +LE E+EK+ FY+ REAW LALE T+G LF LT +A K+R ++ P + EL L A+ VL +E L QF ++N+ AFRK+LKK DKW G+ Y L++ H W+ G H + R S MSDHLR L P L G + GGP W DR VY+VG+FD
Sbjct: 62 FLTRLEIEKEKVAEFYRSREAWCFLALESTRGALFGLTRRASKDRLCLATQGPAAAASPAVGAGDSGTGNGQSSGSLEQDTAGELEGKFLEAKAGATVLLSESRDLVQFVDMNMHAFRKLLKKLDKWTGGVSGREYFTSLIQTHSWINGDRAHGVLRMASAMSDHLRSLRPALALG--PAAGGPC-WADRTVYSVGTFD 257
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Taxonomic scope | Eukaryota |
| Seed ortholog score | 62.4 |
| Seed ortholog evalue | 3.3e-07 |
| Seed eggNOG ortholog | 2850.Phatr54257 |
| EggNOG free text desc. | Cytidylyltransferase-like |
| EggNOG OGs | 2CDCK@1,2S3E4@2759 |
| COG Functional cat. | S |
| Best tax level | Eukaryota |
| Best eggNOG OG | NA|NA|NA |
| Hectar predicted targeting category | mitochondrion |
| Exons | 3 |
| Model size | 710 |
| Cds size | 708 |
| Stop | 0 |
| Start | 0 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815603.3367734-CDS-S-ischiensis_contig11:1731556..1732011 | 1622815603.3367734-CDS-S-ischiensis_contig11:1731556..1732011 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1731557..1732011 + |
| 1695739797.5499725-CDS-S-ischiensis_contig11:1731556..1732011 | 1695739797.5499725-CDS-S-ischiensis_contig11:1731556..1732011 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1731557..1732011 + |
| 1622815603.3537278-CDS-S-ischiensis_contig11:1734077..1734186 | 1622815603.3537278-CDS-S-ischiensis_contig11:1734077..1734186 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1734078..1734186 + |
| 1695739797.5635579-CDS-S-ischiensis_contig11:1734077..1734186 | 1695739797.5635579-CDS-S-ischiensis_contig11:1734077..1734186 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1734078..1734186 + |
| 1622815603.3647316-CDS-S-ischiensis_contig11:1734820..1734964 | 1622815603.3647316-CDS-S-ischiensis_contig11:1734820..1734964 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1734821..1734964 + |
| 1695739797.5786326-CDS-S-ischiensis_contig11:1734820..1734964 | 1695739797.5786326-CDS-S-ischiensis_contig11:1734820..1734964 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1734821..1734964 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2165.1 >prot_S-ischiensis_contig11.2165.1 ID=prot_S-ischiensis_contig11.2165.1|Name=mRNA_S-ischiensis_contig11.2165.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=236bp
GRTPALRRRARLWMKFGKTIREEIPPGLLRHSLDYKGLKQQLAKTPRRGA
AAAAAAPGAARAPGFFEQLEAEREKIWAFYKGREAWTLLALERTQGGLFK
LTVQAKERSRDPVGVDAELVELSLRARVSVAVLQAEVDVLCQFTELNLRA
FRKILKKHDKWCASREGQRYLGGLLKAHGWLAGGSVHRMSRSVSVMSDHL
RDLPPLLPGGGPSSTGGPAGWWDRIVYTVGSFDFDY back to topmRNA from alignment at S-ischiensis_contig11:1731557..1734965+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig11.2165.1 ID=mRNA_S-ischiensis_contig11.2165.1|Name=mRNA_S-ischiensis_contig11.2165.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3409bp|location=Sequence derived from alignment at S-ischiensis_contig11:1731557..1734965+ (Schizocladia ischiensis KU_0333)
GGACGGACACCCGCTCTGCGGAGGCGGGCCAGGCTGTGGATGAAATTCGG
AAAGACCATTCGCGAGGAGATACCTCCGGGGCTCCTGCGGCATAGCCTTG
ACTACAAGGGGTTGAAGCAGCAGCTCGCCAAGACCCCAAGGAGGGGCGCT
GCTGCTGCAGCTGCCGCCCCGGGGGCCGCAAGAGCTCCTGGTTTCTTTGA
GCAACTCGAGGCGGAGAGAGAGAAGATTTGGGCCTTCTACAAGGGTCGAG
AAGCATGGACCCTGCTGGCTCTGGAGCGCACGCAGGGGGGGCTGTTCAAG
CTGACCGTCCAAGCCAAGGAACGTTCCAGAGACCCTGTGGGCGTCGATGC
TGAACTTGTAGAGCTATCCTTGAGGGCCCGCGTTAGCGTGGCTGTGCTGC
AGGCGGAGGTTGACGTTCTTTGTCAGTTCACGGAGCTAAACCTGCGCGCC
TTCCGGTGAGCCATAGCGCAAGCTCGCTGATGTTAGCATATCACAAACTC
GTGTGTAAACTAAACGTGTGTGTGTGATTCAAATACATTGTAACGAGGTA
CAATGTGTGTGTTTGTGTAGAGGCCTATTCGCGTTGTGCTTGCGTTATTT
CGGAGAATCGACCGCGCGACTCTTCCGAGAATGGAGAGTGCTGGCCGAAA
TAGACTCCACCACTCTGGCGAGCGCCCAGTTTCTTCCGGGTGTTCGTTTA
GCGCTGCCTGGAACGGCTGCGTGCTCTTTGGGATATGGGTGCAGAGGCGC
TTTGGCGGCTGAGGAGCATGATGCCCCAAACATAAGGAACGGCTTGGTAC
GAAAATACCCTTGCCTTGCCCTGGACAGTCAAGAAAACGGCCTTGACATA
TTCCTGGACACTCGTATCTGGTGTCATACACTGTATATATATATATATGT
GTGTACGAGTACGCACATTGTGCTTGCCGTAGTCCCGAGACCAATGACCA
CGCACCGTTGACGACGGAACAAATCGTATACTTGGAATTCGAAGTACGTG
CGATTACGCGTGTACTTGTATCGGACAGCGAGCTACCCGTCCTGTGTCGT
CGGACAGTGTGCTACCGTAAAGGTGGGAGAAATTTTGCGTGCAAAACTCG
CAGAACGGACGTGAAGTTTACTATTTCGTACGAGTACAATGAGTTCCGAA
GGCAAAACCTCGATGACGTGCAAATCCTCTCACTTCACTAGCCGGTCGGG
CCCCGAGTTTGCAAAGTACCCGCGTACAGGCGTCAGCTGTGTTTGTTGTG
CCTCGACCCTCTTGCTACTTTCAGAAATCCTTATCAGGTGACGGTACGCT
GATCTCAGACTGCTGTATAAACCCTTTGTGTGTGGTCAATGTTCTCGGGA
CTATTGTACCGGAAGCACAGCGGAGCGCATATATAACTCGCCGCTTATCT
ACCACTCAAAACAGAGAGAGAGGGGTCCTTCTCCGTCTCGACTGAGGCGC
GGGGTCAATGGTCTCGGGACTACGGCAAGCACCACGTGAGTACATACTAC
ATAGTACTTCGAATTATATGTATATAGTATATATATATATATATATATAT
ATATACGAAGTATACGAGTCCTGCTCCGTCTCGACCGAGGTGCGTGGTCA
ATGGTCTCGGGACTACGGCAAGCACAACGTGAGTAGGTACATATATACTG
TGATGGTTTTTCACCCATGTCCTCCCAAGGGTAATGAAGACCCTTTTCCC
CCCTGGGAAGGCGTACGCCCATATCGAGACCCGAAGCACTGCTCCACGCG
GCTTTAAGTTAGGCTCTGGATTGAAGTGAATCAAGTGCTTGTCACACGGC
GTGTGGGAGAGTGCGAACCTGCTGTACCGCGGCCCGAAACGTGTCATATG
CTTGATGAGAGGAAAACGCAGTCGCTTCCGGTAACCGGTCGGTTAGCCCT
TCTGCCCCAGGTGTACACGGAAGTATAGGCATTTGTAGTATTGTGACGCG
GACACCCTCCCAGGGTTCAAAGTGTTCATCAGTTCGTCCCGTTCATGAAA
ATCCAACCGAAAACCAACGCTGCGGCTCACAGCTCTTCCCTGTCCCTTTC
TTCTCCCTCCTCTTCCTTTCCTTCCCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCCCCTCCTCCTCCTCCCCCTCCTCCTCCTCCCCCtCCT
CCTCCCCCCCCTCCCCCTCCTCCTCCCCCTCCCCGTCCCCCTCCCCCTCC
CCCTCCTCCTCCCCCTCCTCCTCCTCCTCCCTCCCCCTCCCCTCCCCCCT
CCCTCCTCCCCCCCCTCCCCTCCCCTCCCCCCCCCCCCTCCCCCTCCCCC
TCCCCCTCCCCCTCCCCCTCCCCCTCCTCCCCCCCCTCCTCCTCCTCCCC
CTCCCTCCCCCTCCCCCTCCCCCTCCTCCCCCTCCCCCTCCTCCCCCTCC
CCCTCCTCCTCCCCCTCCCCCTCCTCCTCCTCCTCCCCCTCCTCCTCTTC
CCCCCCgctTGACACGCTCTCCCCGTCCCCACCCCCGCCTCCTCCGGACC
CGCCCACCCCCGCGCACCCAGCAAGATCCTCAAGAAGCACGATAAATGGT
GCGCCAGCCGCGAGGGTCAGAGATACCTGGGCGGTCTGCTCAAGGCCCAC
GGCTGGCTGGCGGGGGGCAGCGTACACAGGGTGGGTCCGAGTCGCTTGTG
GGTCCACCGACAGACCTGTACTACAGTACAATGCAGAGCAGTAGCGAGCC
CCGCGTGGGGGGGGGAGTGCACCCTGCGTTTGTGCCTGCCTGCCCCTGCC
TGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTACCTGCATG
GCCACCTGCCCATTTGTGTGTGCCTGCCCTTGCCTGCCTGCCTACCTACC
TGCATGACCACCTGCCCACACTGCCTGAGCTGCATGTCCAGTAGCCCGGC
CAGCCCCCACTGCCGCCACCCTCCCGCTTGCCTCCTCCGCTGCCTGCGTG
TGTACGAGTACGCCCGCTACTGGCACGCCCTCGTGCGACCAGGGTTGCAC
TATCGAAGTACTCGTACGTACTCACAGTAGCTAACTGGTCAGGTACTGCC
CAGCTACGGTTCCTATCGGACCACTGCGACGCCCTCCGGTGCTGGCCACT
ATCTGTGCAAGCTTTGCAGGATAAACCGGGGGTTCCTGAGCCGGCTACTG
TGACCATCACAGTAGCAGACGGTGAAGGGGATGAAAATCGGACCATCTTC
CCCGGGCAGTGCAACCCTGCAACCACTGCCTCTGACCCCCCCCCCCCCCC
CCCTGACGCCACAGATGTCACGCAGCGTGTCTGTCATGTCGGACCACCTC
CGCGACCTGCCACCCCTCCTCCCGGGGGGGGGGCCATCGTCCACTGGTGG
CCCAGCGGGGTGGTGGGACCGGATCGTCTACACTGTGGGGAGCTTTGACT
TTGACTACG back to topCoding sequence (CDS) from alignment at S-ischiensis_contig11:1731557..1734965+ >mRNA_S-ischiensis_contig11.2165.1 ID=mRNA_S-ischiensis_contig11.2165.1|Name=mRNA_S-ischiensis_contig11.2165.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1416bp|location=Sequence derived from alignment at S-ischiensis_contig11:1731557..1734965+ (Schizocladia ischiensis KU_0333)
GGACGGACACCCGCTCTGCGGAGGCGGGCCAGGCTGTGGATGAAATTCGG
AAAGACCATTCGCGAGGAGATACCTCCGGGGCTCCTGCGGCATAGCCTTG
ACTACAAGGGGTTGAAGCAGCAGCTCGCCAAGACCCCAAGGAGGGGCGCT
GCTGCTGCAGCTGCCGCCCCGGGGGCCGCAAGAGCTCCTGGTTTCTTTGA
GCAACTCGAGGCGGAGAGAGAGAAGATTTGGGCCTTCTACAAGGGTCGAG
AAGCATGGACCCTGCTGGCTCTGGAGCGCACGCAGGGGGGGCTGTTCAAG
CTGACCGTCCAAGCCAAGGAACGTTCCAGAGACCCTGTGGGCGTCGATGC
TGAACTTGTAGAGCTATCCTTGAGGGCCCGCGTTAGCGTGGCTGTGCTGC
AGGCGGAGGTTGACGTTCTTTGTCAGTTCACGGAGCTAAACCTGCGCGCC
TTCCGGGACGGACACCCGCTCTGCGGAGGCGGGCCAGGCTGTGGATGAAA
TTCGGAAAGACCATTCGCGAGGAGATACCTCCGGGGCTCCTGCGGCATAG
CCTTGACTACAAGGGGTTGAAGCAGCAGCTCGCCAAGACCCCAAGGAGGG
GCGCTGCTGCTGCAGCTGCCGCCCCGGGGGCCGCAAGAGCTCCTGGTTTC
TTTGAGCAACTCGAGGCGGAGAGAGAGAAGATTTGGGCCTTCTACAAGGG
TCGAGAAGCATGGACCCTGCTGGCTCTGGAGCGCACGCAGGGGGGGCTGT
TCAAGCTGACCGTCCAAGCCAAGGAACGTTCCAGAGACCCTGTGGGCGTC
GATGCTGAACTTGTAGAGCTATCCTTGAGGGCCCGCGTTAGCGTGGCTGT
GCTGCAGGCGGAGGTTGACGTTCTTTGTCAGTTCACGGAGCTAAACCTGC
GCGCCTTCCGCAAGATCCTCAAGAAGCACGATAAATGGTGCGCCAGCCGC
GAGGGTCAGAGATACCTGGGCGGTCTGCTCAAGGCCCACGGCTGGCTGGC
GGGGGGCAGCGTACACAGGCAAGATCCTCAAGAAGCACGATAAATGGTGC
GCCAGCCGCGAGGGTCAGAGATACCTGGGCGGTCTGCTCAAGGCCCACGG
CTGGCTGGCGGGGGGCAGCGTACACAGGATGTCACGCAGCGTGTCTGTCA
TGTCGGACCACCTCCGCGACCTGCCACCCCTCCTCCCGGGGGGGGGGCCA
TCGTCCACTGGTGGCCCAGCGGGGTGGTGGGACCGGATCGTCTACACTGT
GGGGAGCTTTGACTTTGACTACATGTCACGCAGCGTGTCTGTCATGTCGG
ACCACCTCCGCGACCTGCCACCCCTCCTCCCGGGGGGGGGGCCATCGTCC
ACTGGTGGCCCAGCGGGGTGGTGGGACCGGATCGTCTACACTGTGGGGAG
CTTTGACTTTGACTAC back to top
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