mRNA_S-ischiensis_contig11.2148.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2148.1
Unique NamemRNA_S-ischiensis_contig11.2148.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2148.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1532330..1533096 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size769
Cds size471
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.1959736-UTR-S-ischiensis_contig11:1532329..15326251622815583.1959736-UTR-S-ischiensis_contig11:1532329..1532625Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1532330..1532625 +
1695739784.6291285-UTR-S-ischiensis_contig11:1532329..15326251695739784.6291285-UTR-S-ischiensis_contig11:1532329..1532625Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1532330..1532625 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.2137914-CDS-S-ischiensis_contig11:1532625..15330961622815583.2137914-CDS-S-ischiensis_contig11:1532625..1533096Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1532626..1533096 +
1695739784.63903-CDS-S-ischiensis_contig11:1532625..15330961695739784.63903-CDS-S-ischiensis_contig11:1532625..1533096Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1532626..1533096 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2148.1prot_S-ischiensis_contig11.2148.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1532626..1533096 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2148.1

>prot_S-ischiensis_contig11.2148.1 ID=prot_S-ischiensis_contig11.2148.1|Name=mRNA_S-ischiensis_contig11.2148.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=157bp
MNPTEPSLPTGRTYMANFAPKPPPPHLPQQPIDQRTLDEPLAWGQLLTRE
HSISYTCNCASIHFILRSMNPHSPPTNLALRVPTAPAKSTQTHLRIITNP
SKYKNTQFLKGTTTHTRVREQSISHTCDCTSLQFIRSMNHTHLRIDVVGQ
HVVQVAL
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mRNA from alignment at S-ischiensis_contig11:1532330..1533096+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2148.1 ID=mRNA_S-ischiensis_contig11.2148.1|Name=mRNA_S-ischiensis_contig11.2148.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=767bp|location=Sequence derived from alignment at S-ischiensis_contig11:1532330..1533096+ (Schizocladia ischiensis KU_0333)
CCTCCCGTGAGTGCAAGGGCCCGTGCGAGAAGAGCCCCCCCCGGCCTTCC
CGGAGCGGAAGCCCCGCCGGCGGGCTCGCGGCCGACAATGTCTGCCGGCC
CGCCGCCGAGCCTCGGCATGTCGGCGTTGTTCTTGCAGCGCGGTGTGTAG
TCCTGGGGGCGCCGCCGCGGGCACGGGGGCCAGAGGCCCCACCCGCGACG
GCCCAGGCAGGCTGCGTCGCTCTCTGACTGAGCGCTCTGTAGAAGAGAAT
CCGACCGAACCGACCCTTCGGACCGAGAGCTAGAGCTAGGAGAGCGATGA
ATCCGACCGAACCAAGCCTTCCGACCGGGCGTACTTACATGGCAAACTTC
GCACCGAAACCGCCACCTCCCCACCTCCCACAGCAACCTATAGACCAAAG
AACTCTCGACGAGCCACTCGCCTGGGGACAACTACTAACACGAGAACACT
CCATCTCATACACGTGCAATTGTGCCTCGATACACTTTATACTTCGAAGT
ATGAATCCCCACTCTCCCCCGACCAATCTCGCCTTGCGGGTCCCGACCGC
TCCGGCCAAATCCACACAAACCCACCTCCGCATAATCACAAATCCTTCCA
AGTATAAGAACACTCAATTCTTAAAAGGGACAACTACTCATACTCGAGTA
CGAGAACAGTCAATCTCACACACGTGCGATTGTACCTCGTTACAATTTAT
ACGTAGTATGAATCACACCCACCTCCGCATTGATGTGGTCGGCCAGCACG
TGGTCCAGGTGGCTCTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1532330..1533096+

>mRNA_S-ischiensis_contig11.2148.1 ID=mRNA_S-ischiensis_contig11.2148.1|Name=mRNA_S-ischiensis_contig11.2148.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=942bp|location=Sequence derived from alignment at S-ischiensis_contig11:1532330..1533096+ (Schizocladia ischiensis KU_0333)
ATGAATCCGACCGAACCAAGCCTTCCGACCGGGCGTACTTACATGGCAAA
CTTCGCACCGAAACCGCCACCTCCCCACCTCCCACAGCAACCTATAGACC
AAAGAACTCTCGACGAGCCACTCGCCTGGGGACAACTACTAACACGAGAA
CACTCCATCTCATACACGTGCAATTGTGCCTCGATACACTTTATACTTCG
AAGTATGAATCCCCACTCTCCCCCGACCAATCTCGCCTTGCGGGTCCCGA
CCGCTCCGGCCAAATCCACACAAACCCACCTCCGCATAATCACAAATCCT
TCCAAGTATAAGAACACTCAATTCTTAAAAGGGACAACTACTCATACTCG
AGTACGAGAACAGTCAATCTCACACACGTGCGATTGTACCTCGTTACAAT
TTATACGTAGTATGAATCACACCCACCTCCGCATTGATGTGGTCGGCCAG
CACGTGGTCCAGGTGGCTCTCATGAATCCGACCGAACCAAGCCTTCCGAC
CGGGCGTACTTACATGGCAAACTTCGCACCGAAACCGCCACCTCCCCACC
TCCCACAGCAACCTATAGACCAAAGAACTCTCGACGAGCCACTCGCCTGG
GGACAACTACTAACACGAGAACACTCCATCTCATACACGTGCAATTGTGC
CTCGATACACTTTATACTTCGAAGTATGAATCCCCACTCTCCCCCGACCA
ATCTCGCCTTGCGGGTCCCGACCGCTCCGGCCAAATCCACACAAACCCAC
CTCCGCATAATCACAAATCCTTCCAAGTATAAGAACACTCAATTCTTAAA
AGGGACAACTACTCATACTCGAGTACGAGAACAGTCAATCTCACACACGT
GCGATTGTACCTCGTTACAATTTATACGTAGTATGAATCACACCCACCTC
CGCATTGATGTGGTCGGCCAGCACGTGGTCCAGGTGGCTCTC
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