mRNA_S-ischiensis_contig11.2139.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2139.1
Unique NamemRNA_S-ischiensis_contig11.2139.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2139.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1446238..1447059 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size824
Cds size456
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.0239923-CDS-S-ischiensis_contig11:1446237..14466931622815583.0239923-CDS-S-ischiensis_contig11:1446237..1446693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1446238..1446693 +
1695739784.5670545-CDS-S-ischiensis_contig11:1446237..14466931695739784.5670545-CDS-S-ischiensis_contig11:1446237..1446693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1446238..1446693 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815583.0372696-UTR-S-ischiensis_contig11:1446693..14470591622815583.0372696-UTR-S-ischiensis_contig11:1446693..1447059Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1446694..1447059 +
1695739784.5810535-UTR-S-ischiensis_contig11:1446693..14470591695739784.5810535-UTR-S-ischiensis_contig11:1446693..1447059Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1446694..1447059 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2139.1prot_S-ischiensis_contig11.2139.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1446238..1446693 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2139.1

>prot_S-ischiensis_contig11.2139.1 ID=prot_S-ischiensis_contig11.2139.1|Name=mRNA_S-ischiensis_contig11.2139.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=152bp
THWFVLRHNRACNADSPKSKLWVCPPTGVAIKPAVLKQIYLKSRLYCSLT
GEPPSAHVVGTVCIASVGRPWRQEDRQPGMGALGRLPWPPGAERASTHTL
QQHSESSNASFFPNHVFYFFKVLLRFKNIRLKHKKKDRNQFHDSEGGLSS
T*
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mRNA from alignment at S-ischiensis_contig11:1446238..1447059+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2139.1 ID=mRNA_S-ischiensis_contig11.2139.1|Name=mRNA_S-ischiensis_contig11.2139.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=822bp|location=Sequence derived from alignment at S-ischiensis_contig11:1446238..1447059+ (Schizocladia ischiensis KU_0333)
ACTCATTGGTTTGTCTTGCGACATAACCGTGCGTGCAATGCCGACAGCCC
CAAGTCGAAACTTTGGGTTTGCCCTCCGACAGGAGTAGCTATTAAGCCTG
CTGTACTCAAGCAAATATACTTGAAATCCCGGCTGTATTGTAGCCTCACA
GGGGAACCCCCTTCCGCACATGTAGTCGGGACCGTCTGCATTGCATCCGT
TGGCAGGCCTTGGCGGCAGGAGGACAGACAACCAGGCATGGGAGCTCTTG
GAAGGCTGCCATGGCCCCCGGGGGCAGAGCGAGCAAGTACGCACACGCTG
CAGCAGCACTCCGAGTCTTCAAATGCTAGTTTTTTTCCAAATCATGTTTT
CTACTTCTTCAAAGTACTTTTGCGCTTCAAAAATATACGTCTAAAACACA
AAAAAAAAGATCGAAACCAATTCCATGACTCGGAAGGTGGTCTCAGCTCG
ACGTGACAAAGGTCTCAGGCTGTTTCTGGGAGGCCTGACTCACAGTCCCC
TTGCGGCAGGCCAGCACACGGTGAAGAGTGCAGTGCCTCCAGGGTATACT
CGCTCTGCCGGCATTCGAACAGCAGATCATCACACCCGGTCACGGCGTAT
GTCCGCCTGGCAGCGCGTGGACGCAACGCGGATGGGACGGTCCCGGTCCG
GCGCCGGCGGGGGCGGAGGCAGCGGCGGCGGCTGCAGCGGCGGCAGGGCC
GGGCCCGGGGCCCTGGCCCCGGCCAGGCCTTTCCCGACCAAGGCCTTGGC
CATCCGTGGTGTTCAGAACAGCCCTGACCGTCGCCGTGGCATGCGCGGCA
GGGGGGTCTAGGGGGGCACGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1446238..1447059+

>mRNA_S-ischiensis_contig11.2139.1 ID=mRNA_S-ischiensis_contig11.2139.1|Name=mRNA_S-ischiensis_contig11.2139.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=912bp|location=Sequence derived from alignment at S-ischiensis_contig11:1446238..1447059+ (Schizocladia ischiensis KU_0333)
ACTCATTGGTTTGTCTTGCGACATAACCGTGCGTGCAATGCCGACAGCCC
CAAGTCGAAACTTTGGGTTTGCCCTCCGACAGGAGTAGCTATTAAGCCTG
CTGTACTCAAGCAAATATACTTGAAATCCCGGCTGTATTGTAGCCTCACA
GGGGAACCCCCTTCCGCACATGTAGTCGGGACCGTCTGCATTGCATCCGT
TGGCAGGCCTTGGCGGCAGGAGGACAGACAACCAGGCATGGGAGCTCTTG
GAAGGCTGCCATGGCCCCCGGGGGCAGAGCGAGCAAGTACGCACACGCTG
CAGCAGCACTCCGAGTCTTCAAATGCTAGTTTTTTTCCAAATCATGTTTT
CTACTTCTTCAAAGTACTTTTGCGCTTCAAAAATATACGTCTAAAACACA
AAAAAAAAGATCGAAACCAATTCCATGACTCGGAAGGTGGTCTCAGCTCG
ACGTGAACTCATTGGTTTGTCTTGCGACATAACCGTGCGTGCAATGCCGA
CAGCCCCAAGTCGAAACTTTGGGTTTGCCCTCCGACAGGAGTAGCTATTA
AGCCTGCTGTACTCAAGCAAATATACTTGAAATCCCGGCTGTATTGTAGC
CTCACAGGGGAACCCCCTTCCGCACATGTAGTCGGGACCGTCTGCATTGC
ATCCGTTGGCAGGCCTTGGCGGCAGGAGGACAGACAACCAGGCATGGGAG
CTCTTGGAAGGCTGCCATGGCCCCCGGGGGCAGAGCGAGCAAGTACGCAC
ACGCTGCAGCAGCACTCCGAGTCTTCAAATGCTAGTTTTTTTCCAAATCA
TGTTTTCTACTTCTTCAAAGTACTTTTGCGCTTCAAAAATATACGTCTAA
AACACAAAAAAAAAGATCGAAACCAATTCCATGACTCGGAAGGTGGTCTC
AGCTCGACGTGA
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