mRNA_S-ischiensis_contig11.2138.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2138.1
Unique NamemRNA_S-ischiensis_contig11.2138.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2138.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1441561..1442916 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size572
Cds size318
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2138.1prot_S-ischiensis_contig11.2138.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1441561..1442664 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.7691097-CDS-S-ischiensis_contig11:1441560..14416201622815577.7691097-CDS-S-ischiensis_contig11:1441560..1441620Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1441561..1441620 +
1695739781.6627133-CDS-S-ischiensis_contig11:1441560..14416201695739781.6627133-CDS-S-ischiensis_contig11:1441560..1441620Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1441561..1441620 +
1622815577.7824752-CDS-S-ischiensis_contig11:1442034..14421981622815577.7824752-CDS-S-ischiensis_contig11:1442034..1442198Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1442035..1442198 +
1695739781.6723988-CDS-S-ischiensis_contig11:1442034..14421981695739781.6723988-CDS-S-ischiensis_contig11:1442034..1442198Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1442035..1442198 +
1622815577.7945795-CDS-S-ischiensis_contig11:1442570..14426641622815577.7945795-CDS-S-ischiensis_contig11:1442570..1442664Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1442571..1442664 +
1695739781.680915-CDS-S-ischiensis_contig11:1442570..14426641695739781.680915-CDS-S-ischiensis_contig11:1442570..1442664Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1442571..1442664 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.813095-UTR-S-ischiensis_contig11:1442664..14429161622815577.813095-UTR-S-ischiensis_contig11:1442664..1442916Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1442665..1442916 +
1695739781.6886628-UTR-S-ischiensis_contig11:1442664..14429161695739781.6886628-UTR-S-ischiensis_contig11:1442664..1442916Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1442665..1442916 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2138.1

>prot_S-ischiensis_contig11.2138.1 ID=prot_S-ischiensis_contig11.2138.1|Name=mRNA_S-ischiensis_contig11.2138.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=106bp
GAAAPQGGGGSRNNLLAAIQQRQKPEQPGSGGGPAVPATEELSPPSSPPS
SPPPLPRMARSSPRGNLSSEVQNARERSAAGGGASRANSSSPNAFLSSIK
SRRVD*
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mRNA from alignment at S-ischiensis_contig11:1441561..1442916+

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2138.1 ID=mRNA_S-ischiensis_contig11.2138.1|Name=mRNA_S-ischiensis_contig11.2138.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1356bp|location=Sequence derived from alignment at S-ischiensis_contig11:1441561..1442916+ (Schizocladia ischiensis KU_0333)
GGGGCGGCTGCGCCGCAAGGGGGCGGGGGCTCGCGGAACAACCTGCTGGC
GGCGATACAGGTGTGTTTGCGTCTTAGTGCCTCCTCTTCTTGCTTCTTGT
GCTTGGGTTTGCATCTTAGTGGCTCCTCTTCTTGCTCTTACTTCTTGCTC
GTGCTGTGCAGCGGCGGATGTGCTACCGAACACAAGTACGGCAGCCGTGC
GTCGCGCCTGCCGCGGTGAGGAGACGAGCGACCTGCTCGCTCGCGCTTCG
TTGCTCCGCTTCCGGCAAGACTCACGTGGTTCCGTACAAGTAGTTATTTC
ACACCCTTGCTGCAGACCTCAGTTGTACTGGTCACACTATCGGAAGGACA
TCTCCCTCCCTCCCTCCATCTTTCCCCTCCATCCCTCATCCCCTCCTCCC
TCGCCACCTCCCTCCCCCCCCCCCCCCCCCGCCCCCCCCTGCCCCCCCCC
CCCTCCCTCCGCGGCCTCCGGCAGCAACGCCAGAAGCCTGAGCAGCCGGG
TTCAGGAGGTGGGCCGGCCGTGCCCGCCACAGAGGAACTCTCGCCCCCAT
CCTCGCCCCCGTCCTCGCCCCCGCCGCTGCCACGGATGGCACGCTCGTCG
CCGCGGGGTAACCTGAGCAGTGAGGTGCAGAATGCCAGGTGAGGAAGGGC
TGGGGCCGAGGGTAGCAGAGAAGGGCGGCCGGGGCGGGGCGGGGTGAGGC
GGGTTTCAGAAGGGAGGGAGGGGGGGGGGAGTTGGCACCGTTGTTGGCGG
CGGCGGTGGTGGTGGTGGCGGAGGTGGTGTTGCGTGGTTGTTGCTGAGAG
GTTGTTGGCGGTGGGTGGTTTCTTCTTGCTCTTCTTTTCGTCCATGGTCG
TGTTTCCAGTAGCACTTGGAAGTGAGTACAGTAGTCAGTACCTAGTAGTG
TGCACCAACAAGTGACCCCCTCACCCCCCTCCCCCCCCGGGCTGCCGGCC
GCCACCGCACTCGCCCCCCCGCCTCTCTCTTCACCCACACGCCTATGCGG
ACACCGCCAGGGAGCGGAGCGCTGCAGGCGGCGGTGCCAGCAGGGCAAAT
TCCTCATCACCCAACGCCTTCCTGTCATCCATCAAATCCCGCCGGGTAGA
CTGAGGCCCACGCCCCCGGGGGACGGCACGGCCCGGCCCGGGGCACAACA
GCACGGTACTACTCACCAGCGCCGTTCATGATGGATTTCTTGCTTGTGGC
GCAGCCGAGGGCATTTTTTTGCCGTTTGCTGGTGGAGCCCCCCATGGCGG
CGCGCGACGAACAGGCACGAGAGAAGAGTGTTAAGGCGGCAGCGCCGGCC
GGCAGCAGCGGTGCAGTGCCAGCTTCTGCATTGCAAGCTTCGCGGCGGCA
GCTGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1441561..1442916+

>mRNA_S-ischiensis_contig11.2138.1 ID=mRNA_S-ischiensis_contig11.2138.1|Name=mRNA_S-ischiensis_contig11.2138.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=636bp|location=Sequence derived from alignment at S-ischiensis_contig11:1441561..1442916+ (Schizocladia ischiensis KU_0333)
GGGGCGGCTGCGCCGCAAGGGGGCGGGGGCTCGCGGAACAACCTGCTGGC
GGCGATACAGGGGGCGGCTGCGCCGCAAGGGGGCGGGGGCTCGCGGAACA
ACCTGCTGGCGGCGATACAGCAACGCCAGAAGCCTGAGCAGCCGGGTTCA
GGAGGTGGGCCGGCCGTGCCCGCCACAGAGGAACTCTCGCCCCCATCCTC
GCCCCCGTCCTCGCCCCCGCCGCTGCCACGGATGGCACGCTCGTCGCCGC
GGGGTAACCTGAGCAGTGAGGTGCAGAATGCCAGCAACGCCAGAAGCCTG
AGCAGCCGGGTTCAGGAGGTGGGCCGGCCGTGCCCGCCACAGAGGAACTC
TCGCCCCCATCCTCGCCCCCGTCCTCGCCCCCGCCGCTGCCACGGATGGC
ACGCTCGTCGCCGCGGGGTAACCTGAGCAGTGAGGTGCAGAATGCCAGGG
AGCGGAGCGCTGCAGGCGGCGGTGCCAGCAGGGCAAATTCCTCATCACCC
AACGCCTTCCTGTCATCCATCAAATCCCGCCGGGTAGACTGAGGAGCGGA
GCGCTGCAGGCGGCGGTGCCAGCAGGGCAAATTCCTCATCACCCAACGCC
TTCCTGTCATCCATCAAATCCCGCCGGGTAGACTGA
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