mRNA_S-ischiensis_contig11.2136.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2136.1 vs. uniprot
Match: A0A836C9Q7_9STRA (Uncharacterized protein (Fragment) n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836C9Q7_9STRA) HSP 1 Score: 248 bits (634), Expect = 1.440e-80 Identity = 125/174 (71.84%), Postives = 143/174 (82.18%), Query Frame = 1
Query: 43 CAIKSCGQPATRGLTIRFCSTHYKLFRQVMAPKDNDKDKV--NLHNQIALLKKQLAATGEQALEFVSLDTARERMQKAVEKLMAGDESAEKDIDKWDKTIRMHPDYAKEQEKAALAWEKSNEELNAQALHSLRCLIPPDVGSSSIQKMVSQGVPRPVAQRIWKVKVLQWVRWHP 558
CAIKSCG+PAT G+TIRFC HYK FRQVMAPKD + D NL+NQIALLKKQLA+TG+ ALEFVSL+TA+ERMQ+AV KLMAGDESAEKDID+WDKTIRMHPDYAKEQE+ A WE N N QAL +R +PPD+G+SSI KM ++GVP A+RIWKVKVL WVRWHP
Sbjct: 1 CAIKSCGRPATHGVTIRFCEDHYKEFRQVMAPKDKEPDSATANLYNQIALLKKQLASTGQVALEFVSLETAKERMQQAVTKLMAGDESAEKDIDRWDKTIRMHPDYAKEQEERAKQWEADNLAANQQALALMRKFVPPDIGASSIAKMAAEGVPAVAAKRIWKVKVLHWVRWHP 174
BLAST of mRNA_S-ischiensis_contig11.2136.1 vs. uniprot
Match: A0A7S2SCH3_9STRA (Hypothetical protein (Fragment) n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SCH3_9STRA) HSP 1 Score: 169 bits (429), Expect = 3.580e-49 Identity = 80/173 (46.24%), Postives = 123/173 (71.10%), Query Frame = 1
Query: 43 CAIKSCGQPATRGLTIRFCSTHYKLFR-QVMAPKDNDKDKVNLHNQIALLKKQLAATGEQALEFVSLDTARERMQKAVEKLMAGDESAEKDIDKWDKTIRMHPDYAKEQEKAALAWEKSNEELNAQALHSLRCLIPPDVGSSSIQKMVSQGVPRPVAQRIWKVKVLQWVRWHP 558
C+I C P T+G++++FC HYK FR QV + D +++ L Q+A+LK QL A G + +E V+LD ARE+MQ+AV++LMAGDE AEKDI+KWD I+M+P+Y +EQE+ A W + N+E N +A ++R L+PPD+ S++ ++ +G+PR +A+R+W K+L +R HP
Sbjct: 28 CSITGCLHPGTKGISMKFCEEHYKEFREQVKSTNDEEEETATLQKQVAMLKHQLKAVGAEPVECVTLDVAREKMQEAVQRLMAGDEMAEKDIEKWDTAIKMNPEYQQEQEEKARKWAEDNKEKNEEACRTMRGLVPPDIKQCSLKTLMERGLPRALAKRLWDKKILWMLRMHP 200
BLAST of mRNA_S-ischiensis_contig11.2136.1 vs. uniprot
Match: A0A7R9U3A9_9STRA (Hypothetical protein (Fragment) n=1 Tax=Pinguiococcus pyrenoidosus TaxID=172671 RepID=A0A7R9U3A9_9STRA) HSP 1 Score: 151 bits (382), Expect = 4.680e-39 Identity = 83/186 (44.62%), Postives = 119/186 (63.98%), Query Frame = 1
Query: 31 VNKECAIKSCGQPATRGLTIRFCSTHY----KLFRQVMAPKDNDKDKVNLHNQIALLKKQLAATGEQALEFVSLDTARERMQKAVEKLMAGDESAEKDIDKWDKTIRMHPDYAKEQEKAALAWEKSNEELNAQALHSLRCLIPPDVGSSSIQKM----VSQGVPRPVA--QRIWKVKVLQWVRWHP 558
+ + C+IK C +PAT G++IRFC HY K F++ A K++ + L QI LLK+QL A GEQ EFV L+TAR+ M +AV++LM GDE+AEKDI++WDK IRM+P+Y +EQE+ AW +S ++L +R +PPD+ S S+ + + G P P A +R+W K+L VR HP
Sbjct: 1455 LGEPCSIKGCPRPATHGVSIRFCEMHYLEFRKQFKESQAEKEDSEQTDTLQKQIDLLKRQLEAAGEQPAEFVDLETARKNMHEAVQRLMEGDEAAEKDIERWDKAIRMNPEYQEEQEREKKAWLESERPKWEESLRIMRGFVPPDIFSMSLPTLKAVTMPSGEPLPTAFAKRLWSKKILWLVRAHP 1640
BLAST of mRNA_S-ischiensis_contig11.2136.1 vs. uniprot
Match: A0A7S2RMF6_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RMF6_9STRA) HSP 1 Score: 110 bits (274), Expect = 1.410e-24 Identity = 59/148 (39.86%), Postives = 96/148 (64.86%), Query Frame = 1
Query: 127 VMAPKDNDKDKVNLHN---QIALLKKQLAATGEQAL-EFVSLDTARERMQKAVEKLMAGDESAEKDIDKWDKTIRMHPDYAKEQEKAALAWEKSNEELNAQALHSLRCLIPPDVGSSSIQKMVSQGVPRPVAQRIWKVKVLQWVRWHP 558
V+ D+D+ + L QI +LK QL G + + E VSL+ A++R+++AVE+++ G+E A+ D DKWD+ IR HP++ +EQ++ A WE+ N E N QAL +LR +PPD+ +++ + +GV P+A+R+W K+L W R P
Sbjct: 640 VLERADSDQARCELEQCLRQIEMLKLQLKNAGVKPIDEVVSLEEAKQRLKRAVEQMIGGNEDAQVDFDKWDEYIRCHPEHKEEQQRLAREWEEKNREKNEQALRALRTFVPPDIYYATLDGLKLRGVQTPLAKRLWDRKILWWCRSEP 787
BLAST of mRNA_S-ischiensis_contig11.2136.1 vs. uniprot
Match: A0A7S2DCR7_9STRA (Hypothetical protein n=1 Tax=Dictyocha speculum TaxID=35687 RepID=A0A7S2DCR7_9STRA) HSP 1 Score: 86.7 bits (213), Expect = 1.850e-16 Identity = 51/140 (36.43%), Postives = 80/140 (57.14%), Query Frame = 1
Query: 145 NDKDKVNLHNQIALLKKQLAATGEQALEFVSLDTARERMQKAVEKLMAGDESAEKDIDKWDKTIRMHPDYAKEQEKAALAWEKSNEELNAQALHSLRCLIPPDV--GSSSIQKMVSQGVPRPVAQRIWKVKVLQWVRWHP 558
ND+DK+ L Q+++L QL A G +E V L A+ ++ A+ LMAGDES E +++KWD +R HPD+ + AW+ +AL LR +P DV ++SI + ++G+ + +A+RI + L VR HP
Sbjct: 223 NDEDKIQLEQQVSMLTTQLKAVGVAPVECVPLAEAQANLEAAIAALMAGDESKEPEVEKWDAAVRNHPDHIAAKAAELKAWQDEEAPRAKEALRELRKYLPTDVVGSAASIVALQNRGLSKLLAKRINSKRALTLVRMHP 362
BLAST of mRNA_S-ischiensis_contig11.2136.1 vs. uniprot
Match: F0YA97_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0YA97_AURAN) HSP 1 Score: 66.6 bits (161), Expect = 1.470e-9 Identity = 43/127 (33.86%), Postives = 75/127 (59.06%), Query Frame = 1
Query: 154 DKVNLHNQIALLKKQLAATGEQAL-EFVSLDTARERMQKAVEKLMAGDESAE--KDIDKWDKTIRMHPDYAKEQEKAALAWEKSNEELNAQALHSLRCLIPPDVGSSSIQKMVSQG-VPRPVAQRIW 522
+K+ HN LLK QL G A+ E VS + A+ +++ A +L+ GD S E +++++WD +R+HP+ A E+ +AA AW + + NA AL +R +PP + S+ +G +P+ A+R++
Sbjct: 179 EKLKTHND--LLKSQLKRAGVTAIDEVVSFEEAKVKLRAAAARLLGGDGSLEDEREMERWDAFLRVHPEKAAEEARAAAAWRRDHAPANAAALRVVRGFVPPAMTSTGASLAQLEGRLPKAAAKRVF 303
BLAST of mRNA_S-ischiensis_contig11.2136.1 vs. uniprot
Match: F0Y927_AURAN (Uncharacterized protein n=1 Tax=Aureococcus anophagefferens TaxID=44056 RepID=F0Y927_AURAN) HSP 1 Score: 55.5 bits (132), Expect = 1.140e-5 Identity = 34/114 (29.82%), Postives = 59/114 (51.75%), Query Frame = 1
Query: 235 SLDTARERMQKAVEKLMAGDESAEKDIDKWDKTIRMHPDYAKEQEKAALAWEKSNEELNAQALHSLRCLIPPDVGSSSIQKMVSQGVPRPV---------AQRIWKVKVLQWVR 549
S++ + ++ A + +AGD +AE D+++ D +R HPD+A + W++ N AL + R L+PPD+ S+ K V + V R V A+R+W + L+ R
Sbjct: 397 SIEAIEDELRAATARCLAGDPTAEADLERLDAALRAHPDFAVRRASEKARWDRDERAANRAALKATRGLVPPDILRSTAAK-VREDVSRAVGPGAAADALAKRVWGLGALRLAR 509 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2136.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2136.1 >prot_S-ischiensis_contig11.2136.1 ID=prot_S-ischiensis_contig11.2136.1|Name=mRNA_S-ischiensis_contig11.2136.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=186bp EEHFRGVTGSVNKECAIKSCGQPATRGLTIRFCSTHYKLFRQVMAPKDNDback to top mRNA from alignment at S-ischiensis_contig11:1434189..1438127+ Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2136.1 ID=mRNA_S-ischiensis_contig11.2136.1|Name=mRNA_S-ischiensis_contig11.2136.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3939bp|location=Sequence derived from alignment at S-ischiensis_contig11:1434189..1438127+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:1434189..1438127+ >mRNA_S-ischiensis_contig11.2136.1 ID=mRNA_S-ischiensis_contig11.2136.1|Name=mRNA_S-ischiensis_contig11.2136.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1116bp|location=Sequence derived from alignment at S-ischiensis_contig11:1434189..1438127+ (Schizocladia ischiensis KU_0333)back to top |