mRNA_S-ischiensis_contig11.2128.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2128.1
Unique NamemRNA_S-ischiensis_contig11.2128.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2128.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1377882..1378699 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size560
Cds size558
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.5235753-CDS-S-ischiensis_contig11:1377881..13780731622815577.5235753-CDS-S-ischiensis_contig11:1377881..1378073Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1377882..1378073 +
1695739781.4786415-CDS-S-ischiensis_contig11:1377881..13780731695739781.4786415-CDS-S-ischiensis_contig11:1377881..1378073Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1377882..1378073 +
1622815577.5342429-CDS-S-ischiensis_contig11:1378332..13786981622815577.5342429-CDS-S-ischiensis_contig11:1378332..1378698Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1378333..1378698 +
1695739781.487896-CDS-S-ischiensis_contig11:1378332..13786981695739781.487896-CDS-S-ischiensis_contig11:1378332..1378698Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1378333..1378698 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2128.1prot_S-ischiensis_contig11.2128.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1377882..1378698 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2128.1

>prot_S-ischiensis_contig11.2128.1 ID=prot_S-ischiensis_contig11.2128.1|Name=mRNA_S-ischiensis_contig11.2128.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=186bp
GLGNSAGARGAKGEGGGGREGRAPPRTPRGGSWSPSRRAVGTMVNFLKKL
RKKAGLGDAKPTGAQLEDLDQLYLAVLDRIPPATKKKHIKKYGGKCPRGT
PAPAAPGAGSTNIPSPAVPPGQERGRPPPFGGAASGGLRQEGPELFCAAL
DEAEEGELPSLETVKDLKAALQKAGSLWIRGFSELG
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mRNA from alignment at S-ischiensis_contig11:1377882..1378699+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2128.1 ID=mRNA_S-ischiensis_contig11.2128.1|Name=mRNA_S-ischiensis_contig11.2128.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=818bp|location=Sequence derived from alignment at S-ischiensis_contig11:1377882..1378699+ (Schizocladia ischiensis KU_0333)
GGTCTTGGCAACTCGGCCGGCGCGCGGGGGGCCAAGGGCGAAGGAGGAGG
CGGCCGAGAAGGGAGGGCGCCGCCCCGGACGCCACGCGGGGGGAGCTGGA
GCCCGTCCCGCCGCGCCGTCGGCACCATGGTCAATTTCCTCAAGAAGCTG
CGGAAAAAGGCAGGGCTGGGCGACGCTAAACCTACGGGCGCGGTGAGTTT
TGCAATTAGCCCGTGGAACGGGTCGGTGGCCTTCCCTCCATCAAGGCGCT
CGCGCTCGCTTGGTCCTTGAACCCCCCGGCTGCCGACCACGGTGTCGGTC
GCGCTTTTTGGCGTGCCGTGGGAAGACCCCCGCTGCGAAGCCGCGGCAAC
AATCGTGCGGAGAGACCCAGTAAGTACGTGTGGTGCATGTGTCGTCATGA
CGGCTCACCCCCCCGCCCGTACCCGCGCCGCACACGCCGCGCTTGCTGCA
GCAACTGGAGGACCTCGACCAGCTGTACCTGGCCGTGCTCGACCGCATCC
CGCCGGCCACCAAGAAGAAGCACATCAAGAAGTATGGGGGGAAGTGCCCA
CGCGGCACGCCCGCGCCCGCGGCGCCCGGGGCCGGATCCACAAACATCCC
GTCCCCGGCGGTGCCCCCGGGGCAGGAGAGAGGGCGCCCCCCGCCGTTCG
GCGGGGCGGCCTCGGGCGGGCTGCGGCAGGAGGGCCCCGAGCTGTTCTGC
GCGGCGCTCGACGAGGCCGAGGAGGGGGAGCTGCCATCGCTGGAAACAGT
GAAGGATCTCAAGGCGGCGCTGCAGAAGGCGGGCAGTTTGTGGATCAGGG
GTTTCAGCGAGTTGGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1377882..1378699+

>mRNA_S-ischiensis_contig11.2128.1 ID=mRNA_S-ischiensis_contig11.2128.1|Name=mRNA_S-ischiensis_contig11.2128.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1116bp|location=Sequence derived from alignment at S-ischiensis_contig11:1377882..1378699+ (Schizocladia ischiensis KU_0333)
GGTCTTGGCAACTCGGCCGGCGCGCGGGGGGCCAAGGGCGAAGGAGGAGG
CGGCCGAGAAGGGAGGGCGCCGCCCCGGACGCCACGCGGGGGGAGCTGGA
GCCCGTCCCGCCGCGCCGTCGGCACCATGGTCAATTTCCTCAAGAAGCTG
CGGAAAAAGGCAGGGCTGGGCGACGCTAAACCTACGGGCGCGGGTCTTGG
CAACTCGGCCGGCGCGCGGGGGGCCAAGGGCGAAGGAGGAGGCGGCCGAG
AAGGGAGGGCGCCGCCCCGGACGCCACGCGGGGGGAGCTGGAGCCCGTCC
CGCCGCGCCGTCGGCACCATGGTCAATTTCCTCAAGAAGCTGCGGAAAAA
GGCAGGGCTGGGCGACGCTAAACCTACGGGCGCGCAACTGGAGGACCTCG
ACCAGCTGTACCTGGCCGTGCTCGACCGCATCCCGCCGGCCACCAAGAAG
AAGCACATCAAGAAGTATGGGGGGAAGTGCCCACGCGGCACGCCCGCGCC
CGCGGCGCCCGGGGCCGGATCCACAAACATCCCGTCCCCGGCGGTGCCCC
CGGGGCAGGAGAGAGGGCGCCCCCCGCCGTTCGGCGGGGCGGCCTCGGGC
GGGCTGCGGCAGGAGGGCCCCGAGCTGTTCTGCGCGGCGCTCGACGAGGC
CGAGGAGGGGGAGCTGCCATCGCTGGAAACAGTGAAGGATCTCAAGGCGG
CGCTGCAGAAGGCGGGCAGTTTGTGGATCAGGGGTTTCAGCGAGTTGGGG
CAACTGGAGGACCTCGACCAGCTGTACCTGGCCGTGCTCGACCGCATCCC
GCCGGCCACCAAGAAGAAGCACATCAAGAAGTATGGGGGGAAGTGCCCAC
GCGGCACGCCCGCGCCCGCGGCGCCCGGGGCCGGATCCACAAACATCCCG
TCCCCGGCGGTGCCCCCGGGGCAGGAGAGAGGGCGCCCCCCGCCGTTCGG
CGGGGCGGCCTCGGGCGGGCTGCGGCAGGAGGGCCCCGAGCTGTTCTGCG
CGGCGCTCGACGAGGCCGAGGAGGGGGAGCTGCCATCGCTGGAAACAGTG
AAGGATCTCAAGGCGGCGCTGCAGAAGGCGGGCAGTTTGTGGATCAGGGG
TTTCAGCGAGTTGGGG
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