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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | no signal peptide or anchor |
| Exons | 3 |
| Model size | 231 |
| Cds size | 141 |
| Stop | 0 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815577.4415815-UTR-S-ischiensis_contig11:1291508..1291579 | 1622815577.4415815-UTR-S-ischiensis_contig11:1291508..1291579 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 1291509..1291579 + |
| 1695739781.4404063-UTR-S-ischiensis_contig11:1291508..1291579 | 1695739781.4404063-UTR-S-ischiensis_contig11:1291508..1291579 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 1291509..1291579 + |
| 1622815577.4560664-UTR-S-ischiensis_contig11:1291962..1291981 | 1622815577.4560664-UTR-S-ischiensis_contig11:1291962..1291981 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 1291963..1291981 + |
| 1695739781.4505959-UTR-S-ischiensis_contig11:1291962..1291981 | 1695739781.4505959-UTR-S-ischiensis_contig11:1291962..1291981 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 1291963..1291981 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815577.472234-CDS-S-ischiensis_contig11:1291981..1292020 | 1622815577.472234-CDS-S-ischiensis_contig11:1291981..1292020 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1291982..1292020 + |
| 1695739781.4608817-CDS-S-ischiensis_contig11:1291981..1292020 | 1695739781.4608817-CDS-S-ischiensis_contig11:1291981..1292020 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1291982..1292020 + |
| 1622815577.486708-CDS-S-ischiensis_contig11:1295056..1295158 | 1622815577.486708-CDS-S-ischiensis_contig11:1295056..1295158 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1295057..1295158 + |
| 1695739781.4697855-CDS-S-ischiensis_contig11:1295056..1295158 | 1695739781.4697855-CDS-S-ischiensis_contig11:1295056..1295158 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 1295057..1295158 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2113.1 >prot_S-ischiensis_contig11.2113.1 ID=prot_S-ischiensis_contig11.2113.1|Name=mRNA_S-ischiensis_contig11.2113.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=47bp
MSWATPQDDNPFADPAVSAARTSAAAGGTGAVEDGAPAWLNAGGAAG back to topmRNA from alignment at S-ischiensis_contig11:1291509..1295158+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig11.2113.1 ID=mRNA_S-ischiensis_contig11.2113.1|Name=mRNA_S-ischiensis_contig11.2113.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3650bp|location=Sequence derived from alignment at S-ischiensis_contig11:1291509..1295158+ (Schizocladia ischiensis KU_0333)
CGCGAAGAACAGACACAGTTGGCTGTTAGCGGGGACTCCTGCTCAAGATA
AGCACTTGGGGCCCTTAGCAGGTGAGTAAGCGGGCGGGTCGCAGCTTCGT
AGCCGACGTCGCGGGGCATTTCGGAATGCGTTTGGTAAGGCCCCAGTTTT
TTGCGGCGCGGGGCAGACCCCCCCTGCCGAGTCTTGATGCGTTTACGGGA
ACCGTATGTGGAAATATCCACCGTGGCGGGTGCATGGAGTTGAGGACTGT
ACGGCTTGTGCGACAGTTTTGGTCGCTGTTGCATCTGAGACGGGGGGGGC
GGTGGAGCCTTGCCGTCTCACTATGAGGCGGTCTGCCGTTGTTGCTGGGG
TCAAACCCCCACGCCCGAGGGCCGTCGTTAGCCGCCACAATACGTTTCAT
ACGCTGAGGCTTGCCTCTAACCCTAACGTGTGCTGCCTGTTGCGTCACTG
ACAGCCCCCAGGCGCAGCGAGCAATGAGCTGGGCAACACCGCAAGATGAC
AACCCGTTTGCTGTGAGTGCCTTTCTGCGGGCCTTTGTGTTGGTCTAAGG
CGTTAGAATCCTGCTCAACGCCCAGTAGCACGCAGTTGTGAATCGGACTG
ATACGAGGTACTACGAAGTATGTACTTACTGCAGTACCTGAATTATAAAC
GATCTACACAGCCAAGTACCAAGTAAATAGCAATCAGCAGTAGCTCTGCA
GTCCGGCGAAGCAAACCAGTTGGTTGCTTGTGCAAAAGCTGGATATTAGC
TTGGCTCGGCTGTCGTTTTTTCCGCCTGCTCCTGTTACCGGAAATTTTCA
GCCCTGAATGGCTTTTAACGCGGGCCCGGGGTGGTAGCGACAGTAAGTAG
GGTTGTAAACGGCTCTGTTGTAGCTCCTCTTCTGGCAGCTCGAAATATGC
GCACCGTGCCCTGAGAGGGGGAAACGAGCCTAAAACAACGTTTCCGTGAG
TGATTTTACTTTTGGAGGCTTTCGCAATTAGCAGAACTCGGAGCGGGGGG
GGGGGCACAGCTGTACAGTACGCCCAACCCGAAGCTCACACAGTTCACCT
GGCCGGGACACATCCTTGGCCCAAACCGTATCACACACTTTTGATGTATG
AACCATACACCAACATGTACTCATGGTGTGCTTGCCGTGGCCCAGAGCAC
CATTGGCCCCACCCCTACTTCCTGAGTTTGGGGCCACCCCCCTGCTGTTC
CTGGCAAGCCACATCCTTCGAATTATGCGCTGTACTACAGCGGTATTAGC
AGGAACAACAGACACAGGGCGAGGTGCAGGCCACGTCACTAGAGACCTCA
ACAGTGGCCAGTACTTATGCTCGAAGTACTCGTATTCTGGGGTGGCAAGC
GAAACCTAGAAAAAATGTAACTCTGTTTTGCCAAAACGGAAGATATCCAA
TAAAAGCCCTTGATACGGGGGAAAGACAAATCACCCTCGGCTGTCGCGCA
ACTTGCTGTCAATCTCGAGAAGCTCAGGTTGCAAAAACAGGCCCCGGGTG
GCGGGCTCCCACCCATGACGTGCACGCGAAAGTGGATGATGCGGCAACCA
CGCCGAGATGAGCACACGCCTTGGCAGCGCGGGAAAGCCCTCGACCTGAG
GAACAAACCGTGTCCAATACTCTAAGCGTCGCCCAACTCGGCGTGTCTCT
TAACCATTTCATCCCTGGGGTCCGTACAATCATAGGGTTTTAGTGTGTAA
GTCCAATTAAGTAGGGCTAAAAGGGTTAAGTTGTCGGATGTCCAAGCCAG
GGGCCTAGACAACCGTTTCCGGCGCTCGCGCACGGCAAAATCTGGCTCCT
AATGCACTATAATCAACTTGGGCCGAGAACGGGGGTTATGTGCACGCACG
GAATCCCAATGTTTCGGCGGTTCATCGCGATTTGCTCGTGGCCGGCTACG
ATTTGCCGGACGCCCGCGTAAGCCAATTTGTTTCCTCAGAGCAAAGACCT
TATTGTGCTTACTTGCTGGTTTCGGTCATCAGACACTCCCGATGGCTGCT
GCCCGTCCCAGATATCCAGGTTTTCATGGAGCGGCCTCACGTACCATTCT
TCCCGCCCAAAATATGTAACGAGCGAGTGGTAAAGAGAGAGGTGTCCCTA
CCTACGGTCTCGTGTTGCCATTTCCGGGACTGTACGGCACAGTACGTACT
ACAGTACAGTACACCAAGTGTACAAGTCACCTGTTGCTTCCACGCACTTG
GTGCAGGTACTCTACTGCTCAAGTACACGTAGAAGTACTTCTATTTTGAG
TGGTAGATACGCGGCGAGTTCCAGGCCCCGTGCCAAAAGGCTCATCCCAA
AGCAGGACTCAACAAAGCCCTTCCTTCCCCCGCAGGGCAAGAACAAAACA
AAAACGAGTACTTGTATACTTCCAAGTATACTTTAGGGTGCGCGCCTCGA
ACTGCACGTGGCAGGCCCCCTTCCAAGTACACACTGCCAGAGTACTGGTT
GTGTGTTTGTGTGTGTGTGTTTTCGCACGGCAGCATGCTGACATACATGT
TCTCTACCGTGACTGTGTGCTGCAGTTGCGTAGCGCGGCGATATATATTC
CGAAGCGCGTGCGTGTGCATCGCGCTTGTTTCTCGGAAGAGCAAGTACGG
TGAGCGCATGCGTGTGTGTTAACCCTTTTACCCCTGAGGTCCGTGTAGTC
ATAGGATTTTAGTGTGTAAGTCCAATGTAGCAGGGGTAAAAGGGTACGCG
TGTGCTTGCTACAATACGGAGCCCTTCTGCCTCGGCGGGTAAAGGAGGGA
AGGCCTGCTCTTTTAAGTAGTTTGCTGGAGACGTGGGCTGGTCGCCGCAC
GTGGCTTGTTTTCATCCTCTGCTTTGTTTGATGCCTGTGTTCTCTACCGC
GGCCCCCTTTGTTCCGTCCTTTCTCTTCTGTCCCGCTGCTTTGCATGCCC
GACCACGTGTAAGGGGCAATCACTCGTACTTACAGTTTTGTTTGTTTTTC
CAGCGCGCGCAAGGGCGTGGGTTGATTCTATTATCGTGCATAATAGTACT
CACGGTGTGCTTGCTGTAGTCCCGGGACCATTGACCACGTACTCATATGG
TCGAAAATAAACGGTTTGCTACCAGTTTGTTTTGTCCATGCCGTCCACGC
CTGGCCGTTGAAAACCACCGGCATGCTGCGTCATGGCATAGTAGGGATGC
GAGGCCAATGGCGGAAAGGCTACCCGGCAGGCTACCCTGCGGGTGGTCCA
GCACGGAGTATACTGGACCGACGGTCAGTGGCGTGCACAAGACACGGGGT
AGTAGCAACCCTCTCCGACCGACGTGGGTACATATGTATTTGCTCAGTAG
TACATACATGCCTCCAAGTTTTCTTGTGTCAAGTACCTACTACAGTAGTG
GAACGTTTGTGGGTACAATGTATCATATCGTTGTCGTGCAATACAGTCCC
GCACACACTCCACGCACTTCCTGGAAGTAGTATACAATAGCTTACAGCTC
ATACAACCAGTGGGAGTATCCGCCGCGAAGCATCATCACTCCAACGCTGT
TTCATTCATTCTTCTGCCTCTCTTTTTCTCTCTCTCTCTGTTCCGCAGGA
CCCCGCTGTGTCCGCAGCAAGAACATCCGCGGCAGCGGGCGGCACGGGCG
CAGTAGAGGACGGGGCCCCGGCTTGGTTGAACGCCGGCGGCGCGGCggGG
back to topCoding sequence (CDS) from alignment at S-ischiensis_contig11:1291509..1295158+ >mRNA_S-ischiensis_contig11.2113.1 ID=mRNA_S-ischiensis_contig11.2113.1|Name=mRNA_S-ischiensis_contig11.2113.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=282bp|location=Sequence derived from alignment at S-ischiensis_contig11:1291509..1295158+ (Schizocladia ischiensis KU_0333)
ATGAGCTGGGCAACACCGCAAGATGACAACCCGTTTGCTATGAGCTGGGC
AACACCGCAAGATGACAACCCGTTTGCTGACCCCGCTGTGTCCGCAGCAA
GAACATCCGCGGCAGCGGGCGGCACGGGCGCAGTAGAGGACGGGGCCCCG
GCTTGGTTGAACGCCGGCGGCGCGGCggGGGACCCCGCTGTGTCCGCAGC
AAGAACATCCGCGGCAGCGGGCGGCACGGGCGCAGTAGAGGACGGGGCCC
CGGCTTGGTTGAACGCCGGCGGCGCGGCggGG back to top
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