mRNA_S-ischiensis_contig11.2108.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2108.1
Unique NamemRNA_S-ischiensis_contig11.2108.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Match: D8LC70_ECTSI (ROK family glucokinase n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LC70_ECTSI)

HSP 1 Score: 197 bits (500), Expect = 3.670e-55
Identity = 110/209 (52.63%), Postives = 138/209 (66.03%), Query Frame = 3 
Query:  273 LLVGLDLGGTNIKGGLV--FVDGQLLRSGSMPLPREHAERTPEAVANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWKDVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGTGVGMGFVQGGRVMPGARGLVEGGHMIVDPAPGARPCPCGQTGCLEAYASASAVTAMTAELLAEG 893
            L VGLD+GGTN+K G++     GQLL      LP   A+R+PEAV + L +L + LLD  G+ W D+   GV  PGQ+ R+ G V+ AS+FP W +VPLA L+ + T RPV + NDA+AAA+AE    F       +I VLTLGTG+G+G V  GRV+ G RGLVEGGHMIV+P P  R C CGQ GCLE YASASAV A+ +E L  G
Sbjct:    9 LFVGLDIGGTNLKAGVIDGTTGGQLLGRAQERLP---ADRSPEAVVDGLVALCRGLLDEHGITWDDILYTGVGCPGQIDREAGVVIGASTFPAWHNVPLANLVQDRTGRPVTVLNDASAAASAE----FASRGSQETIAVLTLGTGIGLGVVCAGRVVTGCRGLVEGGHMIVEPGPNGRLCACGQRGCLEMYASASAVAAIASERLGSG 210
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BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Match: A0A7S2RL15_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2RL15_9STRA)

HSP 1 Score: 163 bits (413), Expect = 2.010e-43
Identity = 89/203 (43.84%), Postives = 123/203 (60.59%), Query Frame = 3 
Query:  279 VGLDLGGTNIKGGLVFVDGQLLRSGSMPLPREHAERTPEAVANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWKDVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGTGVGMGFVQGGRVMPGARGLVEGGHMIVDPAPGARPCPCGQTGCLEAYASASAVTAMTAELLA 887
            VG+DLG TN K G+V  DG+++ + S PL           V   + ++  + +D  GLAW+ +  VGV +PG V R  G V AA++FP W   PL + +    + PV + NDA+AA  AE W G  KG     + ++TLGTG+G+G V GG+++ G+RGL+E GH IVD  P AR C CGQ GC+EAYASA +V A   E+ A
Sbjct:   48 VGVDLGATNAKAGVVRKDGEIISTASKPLGTGVDSHAFHRVVEAIVAVTLDAVDAAGLAWTSIRGVGVGTPGHVHR--GVVHAAANFPEWAHAPLGDAVAHALRCPVFVLNDADAAILAERWVGEAKGS--GEVAMVTLGTGIGVGVVSGGQLVQGSRGLIEAGHSIVDSGPSARLCGCGQKGCIEAYASARSVAARAREVFA 246
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BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Match: A0A7C2PSA7_9BACT (Glucokinase n=1 Tax=Phycisphaerae bacterium TaxID=2026778 RepID=A0A7C2PSA7_9BACT)

HSP 1 Score: 155 bits (393), Expect = 6.460e-41
Identity = 101/227 (44.49%), Postives = 128/227 (56.39%), Query Frame = 3 
Query:  264 PGDLLVGLDLGGTNIKGGLVFVDGQLLRSGSMPLPREHAERTPEAVANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWKDVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGTGVGMGFVQGGRVMPGA-RGLVEGGHMIVDPAPGARPCPCGQTGCLEAYASASAVTAMTAELLAEGTPHSPPRSTGGSGHTT 941
            P    +G+DLGGTNIK G+V  DG+ L   S+P     +E  PE V   L  L Q+L+    LA SDV AVG+ +PG +    G + A  + PGWKDVPL   +++ +  PVAL NDANAAA  E   G G+G     +V+LTLGTG+G G +  GR+  GA     E GHMIV   P  RPCPCGQ GCLE Y+SA+AV     E +  G       + G   H T
Sbjct:    2 PATHTIGIDLGGTNIKAGVVDADGRPLVRRSIPT---QSEGGPEHVIARLAQLTQDLIHAARLARSDVQAVGLGAPGPMSHKLGIIYACPNLPGWKDVPLRARLHDASGLPVALENDANAAAFGEFVAGAGRGTR--DLVLLTLGTGIGGGVIMDGRLQRGAFDNAGEVGHMIV--VPDGRPCPCGQRGCLERYSSANAVAERLIEAVQAGEDSILRTNVGAGAHVT 221
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BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Match: A0A7V3JJE9_9BACT (ROK family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A7V3JJE9_9BACT)

HSP 1 Score: 156 bits (394), Expect = 9.500e-41
Identity = 96/212 (45.28%), Postives = 131/212 (61.79%), Query Frame = 3 
Query:  273 LLVGLDLGGTNIKGGLVFVDGQLLRSGSMPLPREHAERTPEAVANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWKDVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGTGVGMGFVQGGRVMPGARGL-VEGGHMIVDPAPGARPCPCGQTGCLEAYASASAVTAMTAELLAEGTPHS 905
            L VG+DLGGT++K GLV   G+ L   ++P      E+ PE  A  +    +E++   G++  DV+ VG+ SPG +    GT+V  ++FPGW + P+ + + +H   PV L NDA+AAA  E W+G GKG   +S+V+LTLGTGVG G + G  ++ G  G   E GH+IVDP   AR C CGQTG LEAYASA+AV A T E +  G P S
Sbjct:   16 LFVGIDLGGTSVKIGLVDDAGRALCWHAIPT---QVEQGPEEAARRMGQAVREVIQQAGVSAGDVAGVGLGSPGILDYRAGTMVNPTNFPGWNNFPIRQRVADHCGLPVTLANDASAAAYGELWSGAGKGF--SSLVMLTLGTGVGCGVIIGDLIIEGEHGHGTECGHIIVDPDEQARVCSCGQTGHLEAYASATAVVARTHEAIQAGRPTS 222
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BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Match: A0A067CJ68_SAPPC (Uncharacterized protein n=2 Tax=Saprolegnia TaxID=4769 RepID=A0A067CJ68_SAPPC)

HSP 1 Score: 149 bits (375), Expect = 2.280e-38
Identity = 88/196 (44.90%), Postives = 120/196 (61.22%), Query Frame = 3 
Query:  273 LLVGLDLGGTNIKGGLVFVDGQLLRSGSMPLPREHAERTPEAVANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWKDVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGTGVGMGFVQGGRVMPGARGLVEGGHMIVDPAPGARPCPCGQTGCLEAYASASAV 860
            + VG+DLGGT++K GLV ++G++L        RE ++R P+AV  L  +L +E +   G  W+ V++VGV  PGQ+   +G V AA++FP WKDVPL E +      P  L NDA+AA AAE W G        + V+LTLGTGVG G V    ++ G  G +EGGH+I+   P  R C C Q GCLE Y+SASA+
Sbjct:    1 MFVGIDLGGTSVKVGLVSLEGKMLFRAQ----REISDREPDAVIALCAALAKECVADHGSNWTHVTSVGVGCPGQI--SSGIVHAAANFPNWKDVPLQESLKTSLGVPTILVNDADAAVAAEHWVGAAASTK--NFVMLTLGTGVGFGIVNNDEIVAGGTGCIEGGHIIM--VPNGRLCGCTQRGCLEQYSSASAL 186
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BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Match: A0A3A0CTA7_9BACT (Uncharacterized protein n=2 Tax=Planctomycetes TaxID=203682 RepID=A0A3A0CTA7_9BACT)

HSP 1 Score: 149 bits (375), Expect = 2.330e-38
Identity = 97/210 (46.19%), Postives = 124/210 (59.05%), Query Frame = 3 
Query:  273 LLVGLDLGGTNIKGGLVFVDGQLLRSGSMPLPREHAERTPEAVANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWKDVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGTGVGMGFVQGGRVMPGARGL-VEGGHMIVDPAPGARPCPCGQTGCLEAYASASAVTAMTAELLAEGTP 899
            L +G+DLGGT +KGGLV  DG ++   S+P     A+R  + V   +  L ++L  L G A   V+AVG+  PG +   TGTV+A  + PGW++VP+   + E T   V L NDANAAA  E   G G+G    S+V++TLGTGVG GFV  GR+  G+     E GHMIV   P  R C CGQ GCLEAYASAS+  A   E L  G P
Sbjct:    7 LYIGIDLGGTAVKGGLVQADGTIVEKQSIPT---EADRGVDHVLGRMADLVRDLAALAGEAGQHVAAVGLGVPGTLSHATGTVIAPPNLPGWRNVPIVRRLAEATGFRVTLENDANAAAWGEYVCGAGRGCR--SMVMITLGTGVGGGFVFDGRLFRGSHEAGAEIGHMIV--VPNGRVCACGQRGCLEAYASASSTAARALERLRAGEP 209
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BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Match: A0A3L7VMK8_9BACT (ROK family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7VMK8_9BACT)

HSP 1 Score: 149 bits (375), Expect = 3.960e-38
Identity = 92/205 (44.88%), Postives = 120/205 (58.54%), Query Frame = 3 
Query:  282 GLDLGGTNIKGGLVFVDGQLLRSGSMPLPREHAERTPEAVANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWKDVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGTGVGMGFVQGGRVMPGARGL-VEGGHMIVDPAPGARPCPCGQTGCLEAYASASAVTAMTAELLAEG 893
            G+DLGGTNIK  ++   G+++   + P    HA R PE  A  +      L    G+A +DV+ VG+ SPG +    GT+V A + PGW D PL + +  H    V   NDANAA   E W G  +G   +S+V+LTLGTGVG G + G   + GA     E GH+IVDPAP AR CPCGQ G LEAY SA+++ A+ AE LA G
Sbjct:   20 GIDLGGTNIKAAILDDLGRIVEFHTEPT---HAARGPEDAAARMGRAVHTLAGRAGIATTDVARVGLGSPGPLDIPAGTIVRAGNLPGWDDFPLRDRVAAHAGCEVTFANDANAAGYGEYWVGSARGS--SSLVLLTLGTGVGGGIIIGDLNVEGAHSHGSECGHIIVDPAPTARVCPCGQPGHLEAYTSATSLKALAAEALAAG 219
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BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Match: A0A3L7RYL3_9BACT (ROK family protein n=1 Tax=Planctomycetes bacterium TaxID=2026780 RepID=A0A3L7RYL3_9BACT)

HSP 1 Score: 148 bits (373), Expect = 7.910e-38
Identity = 92/208 (44.23%), Postives = 120/208 (57.69%), Query Frame = 3 
Query:  273 LLVGLDLGGTNIKGGLVFVDGQLLRSGSMPLPREHAERTPEAVANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWKDVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGTGVGMGFVQGGRVMPGARGL-VEGGHMIVDPAPGARPCPCGQTGCLEAYASASAVTAMTAELLAEG 893
            L  G+DLGGTNIK  LV   G+++   + P    H  R PE  A  +      L    G+A SD++ VG+ SPG +    GT+V A + PGW D PL + +  H+ R V   NDANAA   E W G  KG   +S+V+LTLGTGVG G + G   + GA     E GH++VDP+  AR CPCGQ G LEAY SA+++ AM  E +A G
Sbjct:   17 LYAGVDLGGTNIKAALVDDAGRMVAFHTEPT---HVSRGPEDAAARMGRSVHTLASRAGIATSDIARVGLGSPGPLDIPKGTIVRAGNLPGWDDFPLRDRVAAHSGREVTFANDANAAGYGEFWVGSAKGA--SSLVLLTLGTGVGGGIIIGDVNVEGAHSHGSECGHILVDPSETARHCPCGQPGHLEAYTSATSLKAMARERIAAG 219
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BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Match: A0A1V9YJD1_9STRA (Glucokinase n=1 Tax=Achlya hypogyna TaxID=1202772 RepID=A0A1V9YJD1_9STRA)

HSP 1 Score: 147 bits (370), Expect = 1.540e-37
Identity = 87/196 (44.39%), Postives = 121/196 (61.73%), Query Frame = 3 
Query:  273 LLVGLDLGGTNIKGGLVFVDGQLLRSGSMPLPREHAERTPEAVANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWKDVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGTGVGMGFVQGGRVMPGARGLVEGGHMIVDPAPGARPCPCGQTGCLEAYASASAV 860
            + VG+DLGGT++K GLV ++G++L        RE ++R+PEAV  L  +L +E +   G  W+ V++VG+  PGQ+ +  G V AA++FP WKDV L   ++E    P  L NDA+AA AAE W G        + V+LTLGTGVG G V    ++ G  G +EGGH+I+   P  R C C Q GCLE Y+SASA+
Sbjct:   11 MFVGIDLGGTSVKVGLVSLEGKMLFRSQ----REISDRSPEAVIALCAALAKECVADHGSNWTHVTSVGIGCPGQISQ--GIVHAAANFPHWKDVTLQASLHELLHVPTVLVNDADAAVAAEHWVGAAATVK--NFVMLTLGTGVGFGIVNNDEIVSGGTGCIEGGHVIM--VPNGRLCGCTQRGCLEQYSSASAL 196
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BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Match: UPI001472B3F7 (ROK family protein n=2 Tax=Tautonia TaxID=2680020 RepID=UPI001472B3F7)

HSP 1 Score: 146 bits (369), Expect = 2.360e-37
Identity = 90/215 (41.86%), Postives = 128/215 (59.53%), Query Frame = 3 
Query:  243 VKTMPQRPGDLLVGLDLGGTNIKGGLVFVDGQLLRSGSMPLPREHAERTPEAVANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWKDVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGTGVGMGFVQGGRVMPGARGLV-EGGHMIVDPAPGARPCPCGQTGCLEAYASASAVTAMTAELL 884
            +  +  RP   L G+DLGGTN+K G+V  DGQ   S  +   + HA+R PEA    L   G+  ++  GL+W D++AVG+ SPG +    G ++   + PGW+++P+ +L+    ++P  L NDANAAA  E WTG GKG    S+V+ TLGTGVG G V+ GR++ G+     E GH+++    G R C CG  G LEAYASA+A+     E L
Sbjct:    1 MSALADRPPYYL-GIDLGGTNVKSGVVDDDGQPRSSIRI---KTHADRGPEAGIATLAEAGRLAVEASGLSWEDIAAVGLGSPGTMDIPAGMLLDPPNLPGWQNLPIRDLLAARLEKPTVLQNDANAAAYGEYWTGAGKGVT--SLVLFTLGTGVGGGIVEQGRIIEGSHSHGGECGHLVIQMENG-RQCGCGGYGHLEAYASATALVKRALEAL 208
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2108.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LC70_ECTSI3.670e-5552.63ROK family glucokinase n=2 Tax=Ectocarpus TaxID=28... [more]
A0A7S2RL15_9STRA2.010e-4343.84Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7C2PSA7_9BACT6.460e-4144.49Glucokinase n=1 Tax=Phycisphaerae bacterium TaxID=... [more]
A0A7V3JJE9_9BACT9.500e-4145.28ROK family protein n=1 Tax=Planctomycetes bacteriu... [more]
A0A067CJ68_SAPPC2.280e-3844.90Uncharacterized protein n=2 Tax=Saprolegnia TaxID=... [more]
A0A3A0CTA7_9BACT2.330e-3846.19Uncharacterized protein n=2 Tax=Planctomycetes Tax... [more]
A0A3L7VMK8_9BACT3.960e-3844.88ROK family protein n=1 Tax=Planctomycetes bacteriu... [more]
A0A3L7RYL3_9BACT7.910e-3844.23ROK family protein n=1 Tax=Planctomycetes bacteriu... [more]
A0A1V9YJD1_9STRA1.540e-3744.39Glucokinase n=1 Tax=Achlya hypogyna TaxID=1202772 ... [more]
UPI001472B3F72.360e-3741.86ROK family protein n=2 Tax=Tautonia TaxID=2680020 ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1247330..1251406 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score198.4
Seed ortholog evalue4.6e-48
Seed eggNOG ortholog2880.D8LC70
Preferred nameGNE
KEGG rclassRC00002,RC00005,RC00017,RC00288
KEGG koko:K12409
KEGG ReactionR00414,R02705
KEGG Pathwayko00520,ko01100,map00520,map01100
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0005975,GO:0006040,GO:0006054,GO:0006082,GO:0006793,GO:0006796,GO:0007155,GO:0008150,GO:0008152,GO:0008761,GO:0009058,GO:0009384,GO:0009987,GO:0016053,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0016853,GO:0016854,GO:0016857,GO:0016999,GO:0017000,GO:0017144,GO:0019200,GO:0019752,GO:0022610,GO:0043436,GO:0044237,GO:0044238,GO:0044249,GO:0044262,GO:0044281,GO:0044283,GO:0044424,GO:0044444,GO:0044464,GO:0046349,GO:0046380,GO:0046394,GO:0046835,GO:0071704,GO:1901135,GO:1901137,GO:1901576
EggNOG free text desc.UDP-N-acetylglucosamine 2-epimerase activity
EggNOG OGs2QUGI@2759,COG1940@1
EC2.7.1.60,3.2.1.183
COG Functional cat.GK
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko01000
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionROK
Ec32 orthologEc-20_004670.1
Exons6
Model size1096
Cds size843
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.153763-UTR-S-ischiensis_contig11:1247329..12475801622815598.153763-UTR-S-ischiensis_contig11:1247329..1247580Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1247330..1247580 +
1695739794.1258192-UTR-S-ischiensis_contig11:1247329..12475801695739794.1258192-UTR-S-ischiensis_contig11:1247329..1247580Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1247330..1247580 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815598.1643684-CDS-S-ischiensis_contig11:1247580..12477241622815598.1643684-CDS-S-ischiensis_contig11:1247580..1247724Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1247581..1247724 +
1695739794.138706-CDS-S-ischiensis_contig11:1247580..12477241695739794.138706-CDS-S-ischiensis_contig11:1247580..1247724Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1247581..1247724 +
1622815598.1790392-CDS-S-ischiensis_contig11:1248133..12482431622815598.1790392-CDS-S-ischiensis_contig11:1248133..1248243Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1248134..1248243 +
1695739794.1469483-CDS-S-ischiensis_contig11:1248133..12482431695739794.1469483-CDS-S-ischiensis_contig11:1248133..1248243Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1248134..1248243 +
1622815598.190829-CDS-S-ischiensis_contig11:1248644..12487351622815598.190829-CDS-S-ischiensis_contig11:1248644..1248735Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1248645..1248735 +
1695739794.1550295-CDS-S-ischiensis_contig11:1248644..12487351695739794.1550295-CDS-S-ischiensis_contig11:1248644..1248735Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1248645..1248735 +
1622815598.2021677-CDS-S-ischiensis_contig11:1249461..12495551622815598.2021677-CDS-S-ischiensis_contig11:1249461..1249555Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1249462..1249555 +
1695739794.1631052-CDS-S-ischiensis_contig11:1249461..12495551695739794.1631052-CDS-S-ischiensis_contig11:1249461..1249555Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1249462..1249555 +
1622815598.2184875-CDS-S-ischiensis_contig11:1250468..12505541622815598.2184875-CDS-S-ischiensis_contig11:1250468..1250554Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1250469..1250554 +
1695739794.1733909-CDS-S-ischiensis_contig11:1250468..12505541695739794.1733909-CDS-S-ischiensis_contig11:1250468..1250554Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1250469..1250554 +
1622815598.231315-CDS-S-ischiensis_contig11:1251088..12514061622815598.231315-CDS-S-ischiensis_contig11:1251088..1251406Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1251089..1251406 +
1695739794.1816306-CDS-S-ischiensis_contig11:1251088..12514061695739794.1816306-CDS-S-ischiensis_contig11:1251088..1251406Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1251089..1251406 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2108.1prot_S-ischiensis_contig11.2108.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1247581..1251406 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2108.1

>prot_S-ischiensis_contig11.2108.1 ID=prot_S-ischiensis_contig11.2108.1|Name=mRNA_S-ischiensis_contig11.2108.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=281bp
MPQRPGDLLVGLDLGGTNIKGGLVFVDGQLLRSGSMPLPREHAERTPEAV
ANLLTSLGQELLDLEGLAWSDVSAVGVASPGQVIRDTGTVVAASSFPGWK
DVPLAELIYEHTQRPVALCNDANAAAAAEAWTGFGKGQPGASIVVLTLGT
GVGMGFVQGGRVMPGARGLVEGGHMIVDPAPGARPCPCGQTGCLEAYASA
SAVTAMTAELLAEGTPHSPPRSTGGSGHTTHADAASGPSCPSPAAPVAAA
AAADAPAASGGGSTRAARGGGGEGAEIGLDR
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mRNA from alignment at S-ischiensis_contig11:1247330..1251406+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2108.1 ID=mRNA_S-ischiensis_contig11.2108.1|Name=mRNA_S-ischiensis_contig11.2108.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4077bp|location=Sequence derived from alignment at S-ischiensis_contig11:1247330..1251406+ (Schizocladia ischiensis KU_0333)
AAGGCGTTCTGGCCCCCCATTCCTGGTTCCTACTGCACTCGGGTGCGACT
ACTGTGACGAGCCTTTCTGCGGAGCAGTTCGCTGGTGTGCGTGGAGGAAC
TGGCAGATCGAAACCCCTAAATCAGACAAGCTTGTCGTGCGCACATCGCA
CTGCAAAAACAGTTGCGCCCGGCACTGCGTGGCATTGCCCACCTCTGTGG
GGTATCTGGTTGCGTTCCGGAGCAATGAGGGCTTGAGTCAACGTGAAAAC
CATGCCGCAAAGACCCGGAGACCTACTGGTAGGGCTTGATTTGGGTGGGA
CCAACATCAAGGGCGGACTGGTCTTCGTCGATGGCCAGCTTCTGAGGAGC
GGTTCGATGCCGCTCCCGAGGGAGCACGCGGAGCGAACCCCCGAGGTCAG
ACAATACGCCTCCTGTGCACAGTGCTCTAGGACCTGTTCATGTGTTGTGC
GCGCAGCGGTGCTTGGCACGCCACCGCGCTGTGCCACTCGCTGATGGGTT
GCGCGCTTGGTCCCGGAGCAATGGTGGCTCGAGTGCACCTGCAGTAGCAG
GCAGGGAGGAAGTGGTATTCATGCTCCAGGGGGGGGCATATTTCACCTCG
ACGAGAGCGTGCCAGTATTCGTCGCAGCTTGAGTGTTGCCGTGCCCCCCA
CTGCTTGTGTGGGTGTGGCAACCGTTGCTCTTTTCCCCACGTACTCTACT
TGTACACAGTCAGCCAAATGGTGTTTCGTCTTGAAGCTGTGCCACCATCG
GCACATCGGGTGGCGTGCCAACCTTTGCCCTCTATATGCTTGCAATTCTT
CCAGGCTGTGGCGAACCTCCTCACTTCCTTGGGCCAGGAGCTGCTGGACC
TGGAGGGCCTGGCGTGGTCAGATGTCTCTGCAGTCGGGGTTGCATCCCCC
GGCCAGGTCATTCGGTGAGCTTTTATCTGTCTTCCTTGCTGCCGCTGCTG
CTTCGCAGGGGAAACATCTGCCGCAATCACGGCACTCCACTCGTCAACGG
GAAAATCTTCCCTCGCGAGGGCAGCTAGGCTTGGTCCTGCAAGCCCCTTT
CGCATGCATCTGTGCACCGCTCAGTGGTCTGTGCAAACCCTGCGCTCCCA
GGCCCCTGCCTTATGCCCCACGCTGCTTTTGAGGCCGTGCTCACCTAGGC
TGCACGCAATGCCCCATCACCGCTCCGATATCCTCTCTCTCGCCCCCCCA
CCCTCTCCCCCCCAACTCACCCCCATGTCCCTGTCTTGGCCGACCCCGCC
CGTGCTCTCTCCGCCCCCGTTCGCTTTCGGCTCATGGTGGCGGCGCCTGT
GACGGCAATGAGCAGGGATACGGGTACGGTGGTAGCGGCGAGCTCCTTCC
CGGGGTGGAAAGATGTGCCGCTGGCAGAGCTCATCTACGAACACACCCAG
CGGCCGGTGAGGACACAGGCGACGTGCGGCCGGCCTTCATGAGCAGAGCC
ATTGTGGAAGCTGCTACACGGGCAGCACAGTGTAGTTTGCGGTGTCACCT
TGCAGTCTCATTTTGGGCTTGGGAGGTTGATTGCTGCATGTGGTGGTAGC
GTACAGTAGTGCTGTACCGGTTGTGTGCATGTGGTGGTAGTGCTGTGCCG
GTCGTGCCTCTTGCAGAATTGCTGTGCTGTTAATGTGCGGCCGGGGTGCG
GCCCGCCTTGTGTTGAGACCTGACCGCCTGTCTTCACGTCCTGCTGCCGT
GCACAACGTGCTGATGTACAGTAGTGCTGCAGCTGTACTGTAGTACTTCG
AAGTACAGTACTCGTACAAGTTTGCAGTACCGTACTTTGCTGCTTGGCGC
ACACGTGCTTCCAGCACGCTGCAGGAGGAAGCGCGTGTGTGTTGGATGCC
CACCTGCCCTCCCAGGTGACTGACTGCTCCGTAGCTCTGCCTGCACATCC
GCGTGCCTGCCTGCCTGGCGGCTGCCTGCCTGCCTGCACGTCTGCCCGCC
TGCCTGCCTGCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTACCTGC
GTGCCTGCGTGCCTGCCTGCCCGCCTGCCTGCCCGCCTGCCTGCCCATCT
GCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTGCCTCTGCCCCGGC
CTACCCCTCTCACCCTCCCGGCAAACAAACAGGTGGCCCTGTGCAACGAT
GCCAATGCCGCGGCCGCCGCGGAGGCGTGGACGGGTTTCGGGAAGGGCCA
GCCAGGCGCAAGCATCGTCGTTCTCAGTGAGTACTTGGAAGTACTGTAGC
TCAGTGAGTACTTGCAAGTACTTGGAATTAGTTCAGTATTTCTGACTCGT
AGTGCGTGCCACCCGGTGCGTCCCGTCGTGCTCAGTGAGTACTTGGAAGT
ACTTGGAAGTAGTTCAGTATTTCTGACTCGTAGCGTGCCGTGCTGCGCGC
CACCCGGTGCGTCGTGTCCCGTCGCCCCTCCCTGCACTTGTGGTAGATGC
TATTGTAGCTGCCGCCTGCATCGGGGCCGCCCAGCTGCCCGCTTCGGCCC
GCTGTCTCCTGACGTATTTAACCCACAAAGGACGAATGTACTTAGCTGTA
TGAGTACTCCCGGAAGTACAGCACAGTGCATTGATTCCTCGCCACCTACT
GTACTTGCTAGCACTACTGCAGTTTCCTAGCTCCTGCAGTTTAGTGTACG
GGCGTCCTCCAAGGGTGAAACTCGTACTTGTACTGCACTCACCCTCCGTC
TTGGTCGAGGCACGGGGTCAATGGTCTCAGGAATACGGCAAGCGCAGCGT
GAGCATATATATATGTGTGTGTGTGTGTGTGTACTCACGTTTTGCTTACC
GTAGTCCCGAGACCATATACTGCGTACTTAGCATATTTACCCACGTGCCG
TGGCGACCCCTTTGCCGGCCCTGCTGCATCCCTGCCCTACCCCATCTTGC
ACTGCCCCGTGTGCCACCATATCCGTTTCTTCTAGAGCCGTGAGCAAAAG
CCGCGCACGTCCAGGCCACATACTTGCTATGATTAGCGCCATGCTGGAAC
GCCCTGACACAAGAACCCTGCGCCTTCCCCCTTGACGCCCTCGCCCACCC
CTGTCCCTGTCCCCACCCCCCAATCGCCACCCCGGATGTTCCTTGGGGCC
ATGGGGGTGATTGGCTGGGAAAACGGGACGACGTCGCAGCCCTGGGGACA
GGTGTGGGCATGGGGTTTGTGCAGGGTGGGCGTGTGATGCCGGGTGCGCG
GGGCCTGGTGGAGGGAGGCCACATGGTGAGCGCCGCAAGTCTCCACGACA
CGGGTCGTTGTTGTTCTTGTTGCCGGTGGTAGTTGTGGTCGTTGTCGCTG
GTGGTGGTGGTGGTGTTCGCGGTTGTGGGGGGGGTGTTGGCGTCGGTGTG
GTCATGGGTGTTGCTGCTGTCCTGCCCGTAAAGTAGGTGTTTTGCTGCGT
GCACTGCACGAGATCCGCACGCTGCAGTGTGATACTTGCAAGCGAGTACC
GTAGCGCTTCCAAGTACTCAAGAGTACATGCTACTGTATGTTCTACACTG
TACGCACTATCCGTAGTATGGGTGTACCACTACCGAATACTCGTGCACTG
CAGTAAGTACCTCCAAACCCGGTGGCAGAAAAGTGTTGTCCACCAGCCAG
GCGATTCCGCATGGCAAGCGGCTAACCATTCTAGCCCCGCCCCCGCCCCC
TTCCCGCCCCTCCCCCATCATTGTGGGGGGCCATTGTCCACCTGGACATG
GGCAATCGCCACTCCACTGCCACTGCTGCGGCCCCGGGGGGTGCCGCCGC
CACAAAAAGATCGTGGACCCTGCCCCGGGGGCGCGGCCCTGCCCGTGCGG
ACAGACGGGATGCCTGGAGGCGTACGCGTCGGCCTCCGCCGTAACCGCCA
TGACTGCAGAGCTGCTGGCAGAGGGCACGCCGCACTCCCCCCCACGCTCC
ACAGGCGGCAGCGGCCACACTACCCACGCCGACGCCGCGTCTGGCCCGTC
TTGCCCCTCGCCAGCGGCACCAGTGGCGGCGGCGGCGGCGGCGGATGCCC
CCGCCGCCAGCGGCGGTGGCAGTACCAGGGCCGCCCGGGGCGGGGGCGGG
GAAGGGGCGGAAATTGGTCTGGACCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1247330..1251406+

>mRNA_S-ischiensis_contig11.2108.1 ID=mRNA_S-ischiensis_contig11.2108.1|Name=mRNA_S-ischiensis_contig11.2108.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1686bp|location=Sequence derived from alignment at S-ischiensis_contig11:1247330..1251406+ (Schizocladia ischiensis KU_0333)
ATGCCGCAAAGACCCGGAGACCTACTGGTAGGGCTTGATTTGGGTGGGAC
CAACATCAAGGGCGGACTGGTCTTCGTCGATGGCCAGCTTCTGAGGAGCG
GTTCGATGCCGCTCCCGAGGGAGCACGCGGAGCGAACCCCCGAGATGCCG
CAAAGACCCGGAGACCTACTGGTAGGGCTTGATTTGGGTGGGACCAACAT
CAAGGGCGGACTGGTCTTCGTCGATGGCCAGCTTCTGAGGAGCGGTTCGA
TGCCGCTCCCGAGGGAGCACGCGGAGCGAACCCCCGAGGCTGTGGCGAAC
CTCCTCACTTCCTTGGGCCAGGAGCTGCTGGACCTGGAGGGCCTGGCGTG
GTCAGATGTCTCTGCAGTCGGGGTTGCATCCCCCGGCCAGGTCATTCGGC
TGTGGCGAACCTCCTCACTTCCTTGGGCCAGGAGCTGCTGGACCTGGAGG
GCCTGGCGTGGTCAGATGTCTCTGCAGTCGGGGTTGCATCCCCCGGCCAG
GTCATTCGGGATACGGGTACGGTGGTAGCGGCGAGCTCCTTCCCGGGGTG
GAAAGATGTGCCGCTGGCAGAGCTCATCTACGAACACACCCAGCGGCCGG
GATACGGGTACGGTGGTAGCGGCGAGCTCCTTCCCGGGGTGGAAAGATGT
GCCGCTGGCAGAGCTCATCTACGAACACACCCAGCGGCCGGTGGCCCTGT
GCAACGATGCCAATGCCGCGGCCGCCGCGGAGGCGTGGACGGGTTTCGGG
AAGGGCCAGCCAGGCGCAAGCATCGTCGTTCTCAGTGGCCCTGTGCAACG
ATGCCAATGCCGCGGCCGCCGCGGAGGCGTGGACGGGTTTCGGGAAGGGC
CAGCCAGGCGCAAGCATCGTCGTTCTCACCCTGGGGACAGGTGTGGGCAT
GGGGTTTGTGCAGGGTGGGCGTGTGATGCCGGGTGCGCGGGGCCTGGTGG
AGGGAGGCCACATGCCCTGGGGACAGGTGTGGGCATGGGGTTTGTGCAGG
GTGGGCGTGTGATGCCGGGTGCGCGGGGCCTGGTGGAGGGAGGCCACATG
ATCGTGGACCCTGCCCCGGGGGCGCGGCCCTGCCCGTGCGGACAGACGGG
ATGCCTGGAGGCGTACGCGTCGGCCTCCGCCGTAACCGCCATGACTGCAG
AGCTGCTGGCAGAGGGCACGCCGCACTCCCCCCCACGCTCCACAGGCGGC
AGCGGCCACACTACCCACGCCGACGCCGCGTCTGGCCCGTCTTGCCCCTC
GCCAGCGGCACCAGTGGCGGCGGCGGCGGCGGCGGATGCCCCCGCCGCCA
GCGGCGGTGGCAGTACCAGGGCCGCCCGGGGCGGGGGCGGGGAAGGGGCG
GAAATTGGTCTGGACCGGATCGTGGACCCTGCCCCGGGGGCGCGGCCCTG
CCCGTGCGGACAGACGGGATGCCTGGAGGCGTACGCGTCGGCCTCCGCCG
TAACCGCCATGACTGCAGAGCTGCTGGCAGAGGGCACGCCGCACTCCCCC
CCACGCTCCACAGGCGGCAGCGGCCACACTACCCACGCCGACGCCGCGTC
TGGCCCGTCTTGCCCCTCGCCAGCGGCACCAGTGGCGGCGGCGGCGGCGG
CGGATGCCCCCGCCGCCAGCGGCGGTGGCAGTACCAGGGCCGCCCGGGGC
GGGGGCGGGGAAGGGGCGGAAATTGGTCTGGACCGG
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