mRNA_S-ischiensis_contig11.2103.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2103.1
Unique NamemRNA_S-ischiensis_contig11.2103.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE)

HSP 1 Score: 96.7 bits (239), Expect = 4.260e-21
Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query:    1 METQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDG--SAMKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
            M+ QK  EGA YVTGS+ +P I +LR  L+ A+  L +T   G  ++ ++A  AV   A+ + +DF  RWGDG  +  Y  G+R+QP GFK  QV ATA+DPR K L+GI
Sbjct:  284 MQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGI 393          
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI)

HSP 1 Score: 95.9 bits (237), Expect = 8.180e-21
Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 1
Query:    1 METQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDG--SAMKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
            M+ QK  EGA YVTGS+ I  + +LR  L+ A+  L +    G     ++A  AV   A+ ++ DF  RWGDG ++  Y  G+R+QP GFK+ QV ATALDPR K L+GI
Sbjct:  248 MKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGI 357          
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 4.170e-20
Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1
Query:   37 VTGSLVIPYIFDLRTELKDAVFKLNSTTVDGSA-MKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
            VTGSLV+P+I+DLR  L+DA+  L     D  A +  A  AV    + +  D+  RWGDG ++ +Y  G R+QPGGFK   VLATALDPRTK  +G+
Sbjct:  198 VTGSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGV 294          
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE)

HSP 1 Score: 92.0 bits (227), Expect = 1.000e-19
Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 1
Query:    1 METQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDG-SAMKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
            M  QK  E +  VT SLV  YI DLR EL +A+ +L + +    S + +A+  + + A  +  D + RW DG DV +Y+ G R+QP GFKK QVLATALDPR+K L+GI
Sbjct:  185 MTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGI 293          
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE)

HSP 1 Score: 87.8 bits (216), Expect = 6.080e-18
Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 1
Query:    1 METQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDG-SAMKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
            M  QK  E +  VT  LV PYI DL+  L +AV +L + +    S + +A+  V   AQ +  D + RWGD  DV +Y+ G R+QP GFKK QVLATAL PR+K L+GI
Sbjct:  213 MTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGI 321          
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE)

HSP 1 Score: 74.3 bits (181), Expect = 1.610e-13
Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1
Query:  187 DFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
            DF  RWGDG+++ +Y  GRR+QPGGFK  QVLATALDPRTK L+G+
Sbjct:   50 DFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGV 95          
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE)

HSP 1 Score: 72.8 bits (177), Expect = 6.230e-13
Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query:  145 AQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
            A+ AV    + +  DF  RWGDG+++  Y  G R+QP GFK  QVLATALDPRTK LHG+
Sbjct:  158 ARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGV 217          
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE)

HSP 1 Score: 59.7 bits (143), Expect = 4.150e-8
Identity = 46/111 (41.44%), Postives = 57/111 (51.35%), Query Frame = 1
Query:    7 TQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDGSAMKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQ-----QPGGFKKTQVLATALDPRTKFLHGI 324
            +QK  E +  VT SLVIPYI DLR EL +AV +L +      ++    VA +K                KDV       R      +P GFKK QVLATALDPR+K L+GI
Sbjct:  259 SQKHREASKDVTVSLVIPYIADLRDELDEAVERLQAHACPAESI----VAEAK----------------KDVFFAPKHVRPTSVIVEPRGFKKKQVLATALDPRSKSLYGI 349          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 8
Match NameE-valueIdentityDescription
A0A6H5KUY5_9PHAE4.260e-2146.36Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D8LCS5_ECTSI8.180e-2145.45Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ec... [more]
A0A6H5L7Y8_9PHAE4.170e-2048.45Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5KVI1_9PHAE1.000e-1946.79Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JHP9_9PHAE6.080e-1846.79Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 13... [more]
A0A6H5JWI1_9PHAE1.610e-1367.39Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
A0A6H5JVE5_9PHAE6.230e-1355.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A6H5JJV8_9PHAE4.150e-841.44Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ec... [more]
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1224293..1225049 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score96.3
Seed ortholog evalue9.6e-18
Seed eggNOG ortholog2880.D7G5Z0
EggNOG free text desc.protein dimerization activity
EggNOG OGsKOG1121@1,KOG1121@2759
COG Functional cat.E
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons2
Model size330
Cds size330
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.9938161-CDS-S-ischiensis_contig11:1224292..12245321622815597.9938161-CDS-S-ischiensis_contig11:1224292..1224532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1224293..1224532 -
1695739794.0527272-CDS-S-ischiensis_contig11:1224292..12245321695739794.0527272-CDS-S-ischiensis_contig11:1224292..1224532Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1224293..1224532 -
1622815598.0065691-CDS-S-ischiensis_contig11:1224959..12250491622815598.0065691-CDS-S-ischiensis_contig11:1224959..1225049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1224960..1225049 -
1695739794.0636833-CDS-S-ischiensis_contig11:1224959..12250491695739794.0636833-CDS-S-ischiensis_contig11:1224959..1225049Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1224960..1225049 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2103.1prot_S-ischiensis_contig11.2103.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1224293..1225049 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2103.1

>prot_S-ischiensis_contig11.2103.1 ID=prot_S-ischiensis_contig11.2103.1|Name=mRNA_S-ischiensis_contig11.2103.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp
METQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDGSAMKQAQ
VAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDP
RTKFLHGIPP
back to top

mRNA from alignment at S-ischiensis_contig11:1224293..1225049-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2103.1 ID=mRNA_S-ischiensis_contig11.2103.1|Name=mRNA_S-ischiensis_contig11.2103.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=757bp|location=Sequence derived from alignment at S-ischiensis_contig11:1224293..1225049- (Schizocladia ischiensis KU_0333)
ATGGAGACGCAGAAGCTGTTCGAGGGTGCCGCATACGTGACCGGCAGCCT GGTCATTCCGTACATCTTTGATCTGCGGACCGAACTGAAGGTGAATACAG ACGCCTCCGTTTTGTCTATGTGTACGTGTATGTGTCTGTGGACTGTAGAT GTGCGCGCAAGAAGTGTGTGCATCTGCTATTGTTGAATTTGCGCGCGTGT GAGTGCATGTGTGTTTGCGTATGCGTGCATGTGTGTACGCGCACATGCAT GCGTGTGAATACATGCGTACGCGCGGCCGCTGTTGACTTGTGTGCGATAT GAGTACTTTGAAGTAATTCTTATGCCTGGCAGTTCATACCTCGCACAAAG GCCCGTGCAGTGTGTAAGTAGCACAATATACGTACTCCTACCTCGAATAG CACGCAACACTGCATACTGCATACGTCGAAACAAAAAATCAACACTTGGT ACAAGTACTGCTAAATTTGCAGCACTGACAGGCTCTCTGTGTGTGCACTC TTTAACTGTACTCGCAGGACGCCGTGTTCAAGCTCAACTCCACCACTGTG GACGGGTCCGCGATGAAGCAGGCTCAGGTCGCGGTCAGCAAGCTTGCGCA ACAGATGCTGAAGGACTTCAACGGCCGGTGGGGAGACGGGAAGGACGTCG CCCTGTACAGCACAGGGCGCAGACAGCAGCCTGGCGGTTTCAAGAAGACA CAAGTGCTGGCAACGGCCCTGGACCCGCGGACCAAGTTCCTGCACGGCAT CCCGCCG
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:1224293..1225049-

>mRNA_S-ischiensis_contig11.2103.1 ID=mRNA_S-ischiensis_contig11.2103.1|Name=mRNA_S-ischiensis_contig11.2103.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig11:1224293..1225049- (Schizocladia ischiensis KU_0333)
ATGGAGACGCAGAAGCTGTTCGAGGGTGCCGCATACGTGACCGGCAGCCT
GGTCATTCCGTACATCTTTGATCTGCGGACCGAACTGAAGATGGAGACGC
AGAAGCTGTTCGAGGGTGCCGCATACGTGACCGGCAGCCTGGTCATTCCG
TACATCTTTGATCTGCGGACCGAACTGAAGGACGCCGTGTTCAAGCTCAA
CTCCACCACTGTGGACGGGTCCGCGATGAAGCAGGCTCAGGTCGCGGTCA
GCAAGCTTGCGCAACAGATGCTGAAGGACTTCAACGGCCGGTGGGGAGAC
GGGAAGGACGTCGCCCTGTACAGCACAGGGCGCAGACAGCAGCCTGGCGG
TTTCAAGAAGACACAAGTGCTGGCAACGGCCCTGGACCCGCGGACCAAGT
TCCTGCACGGCATCCCGCCGGACGCCGTGTTCAAGCTCAACTCCACCACT
GTGGACGGGTCCGCGATGAAGCAGGCTCAGGTCGCGGTCAGCAAGCTTGC
GCAACAGATGCTGAAGGACTTCAACGGCCGGTGGGGAGACGGGAAGGACG
TCGCCCTGTACAGCACAGGGCGCAGACAGCAGCCTGGCGGTTTCAAGAAG
ACACAAGTGCTGGCAACGGCCCTGGACCCGCGGACCAAGTTCCTGCACGG
CATCCCGCCG
back to top