mRNA_S-ischiensis_contig11.2103.1 (mRNA) Schizocladia ischiensis KU_0333
|
Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5KUY5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KUY5_9PHAE) HSP 1 Score: 96.7 bits (239), Expect = 4.260e-21 Identity = 51/110 (46.36%), Postives = 70/110 (63.64%), Query Frame = 1
Query: 1 METQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDG--SAMKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
M+ QK EGA YVTGS+ +P I +LR L+ A+ L +T G ++ ++A AV A+ + +DF RWGDG + Y G+R+QP GFK QV ATA+DPR K L+GI
Sbjct: 284 MQAQKDLEGAKYVTGSMTVPKIGELRNGLEAAIADLRATDRFGISASTREAMEAVLPDAEALWEDFLNRWGDGSSILEYREGKRRQPQGFKLQQVCATAVDPRAKHLYGI 393
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: D8LCS5_ECTSI (Dimer_Tnp_hAT domain-containing protein n=2 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCS5_ECTSI) HSP 1 Score: 95.9 bits (237), Expect = 8.180e-21 Identity = 50/110 (45.45%), Postives = 68/110 (61.82%), Query Frame = 1
Query: 1 METQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDG--SAMKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
M+ QK EGA YVTGS+ I + +LR L+ A+ L + G ++A AV A+ ++ DF RWGDG ++ Y G+R+QP GFK+ QV ATALDPR K L+GI
Sbjct: 248 MKAQKDLEGAQYVTGSMTIGKMAELREGLEAAITDLKAVAQQGLKETTQKAMEAVRPDAEALMADFTNRWGDGSNILEYREGKRRQPQGFKRKQVYATALDPRAKHLYGI 357
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5L7Y8_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5L7Y8_9PHAE) HSP 1 Score: 94.0 bits (232), Expect = 4.170e-20 Identity = 47/97 (48.45%), Postives = 62/97 (63.92%), Query Frame = 1
Query: 37 VTGSLVIPYIFDLRTELKDAVFKLNSTTVDGSA-MKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
VTGSLV+P+I+DLR L+DA+ L D A + A AV + + D+ RWGDG ++ +Y G R+QPGGFK VLATALDPRTK +G+
Sbjct: 198 VTGSLVVPFIYDLRNSLEDAIDDLVELPPDSDANVNTAWAAVMPCIKALRDDYIDRWGDGHNILIYKEGPRRQPGGFKPVHVLATALDPRTKIPYGV 294
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5KVI1_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KVI1_9PHAE) HSP 1 Score: 92.0 bits (227), Expect = 1.000e-19 Identity = 51/109 (46.79%), Postives = 69/109 (63.30%), Query Frame = 1
Query: 1 METQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDG-SAMKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
M QK E + VT SLV YI DLR EL +A+ +L + + S + +A+ + + A + D + RW DG DV +Y+ G R+QP GFKK QVLATALDPR+K L+GI
Sbjct: 185 MTAQKHLEASKGVTVSLVTAYIADLRDELDEAIERLQAYSCPAESIVAEAKKDILRCAPALQTDLSRRWRDGTDVLVYTEGPRRQPRGFKKKQVLATALDPRSKSLYGI 293
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5JHP9_9PHAE (Autophagy protein 5 n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JHP9_9PHAE) HSP 1 Score: 87.8 bits (216), Expect = 6.080e-18 Identity = 51/109 (46.79%), Postives = 67/109 (61.47%), Query Frame = 1
Query: 1 METQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDG-SAMKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
M QK E + VT LV PYI DL+ L +AV +L + + S + +A+ V AQ + D + RWGD DV +Y+ G R+QP GFKK QVLATAL PR+K L+GI
Sbjct: 213 MTAQKHLEASKEVTVRLVSPYIADLQDGLDEAVERLQAHSCPAESIVAEAKKDVILCAQALQTDLSRRWGDRTDVLVYTEGPRRQPRGFKKEQVLATALGPRSKSLYGI 321
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5JWI1_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JWI1_9PHAE) HSP 1 Score: 74.3 bits (181), Expect = 1.610e-13 Identity = 31/46 (67.39%), Postives = 38/46 (82.61%), Query Frame = 1
Query: 187 DFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
DF RWGDG+++ +Y GRR+QPGGFK QVLATALDPRTK L+G+
Sbjct: 50 DFINRWGDGRNILIYKEGRRRQPGGFKPVQVLATALDPRTKILYGV 95
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5JVE5_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JVE5_9PHAE) HSP 1 Score: 72.8 bits (177), Expect = 6.230e-13 Identity = 33/60 (55.00%), Postives = 41/60 (68.33%), Query Frame = 1
Query: 145 AQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQQPGGFKKTQVLATALDPRTKFLHGI 324
A+ AV + + DF RWGDG+++ Y G R+QP GFK QVLATALDPRTK LHG+
Sbjct: 158 ARAAVMPCIKALRDDFINRWGDGRNILNYKEGPRRQPAGFKPVQVLATALDPRTKILHGV 217
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Match: A0A6H5JJV8_9PHAE (Dimer_Tnp_hAT domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JJV8_9PHAE) HSP 1 Score: 59.7 bits (143), Expect = 4.150e-8 Identity = 46/111 (41.44%), Postives = 57/111 (51.35%), Query Frame = 1
Query: 7 TQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDGSAMKQAQVAVSKLAQQMLKDFNGRWGDGKDVALYSTGRRQ-----QPGGFKKTQVLATALDPRTKFLHGI 324
+QK E + VT SLVIPYI DLR EL +AV +L + ++ VA +K KDV R +P GFKK QVLATALDPR+K L+GI
Sbjct: 259 SQKHREASKDVTVSLVIPYIADLRDELDEAVERLQAHACPAESI----VAEAK----------------KDVFFAPKHVRPTSVIVEPRGFKKKQVLATALDPRSKSLYGI 349 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2103.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 8
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2103.1 >prot_S-ischiensis_contig11.2103.1 ID=prot_S-ischiensis_contig11.2103.1|Name=mRNA_S-ischiensis_contig11.2103.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp METQKLFEGAAYVTGSLVIPYIFDLRTELKDAVFKLNSTTVDGSAMKQAQback to top mRNA from alignment at S-ischiensis_contig11:1224293..1225049- Legend: polypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2103.1 ID=mRNA_S-ischiensis_contig11.2103.1|Name=mRNA_S-ischiensis_contig11.2103.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=757bp|location=Sequence derived from alignment at S-ischiensis_contig11:1224293..1225049- (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:1224293..1225049- >mRNA_S-ischiensis_contig11.2103.1 ID=mRNA_S-ischiensis_contig11.2103.1|Name=mRNA_S-ischiensis_contig11.2103.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig11:1224293..1225049- (Schizocladia ischiensis KU_0333)back to top |