mRNA_S-ischiensis_contig11.2096.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2096.1
Unique NamemRNA_S-ischiensis_contig11.2096.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2096.1 vs. uniprot
Match: A0A6H5JAB7_9PHAE (DNA_MISMATCH_REPAIR_2 domain-containing protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JAB7_9PHAE)

HSP 1 Score: 123 bits (309), Expect = 1.040e-28
Identity = 69/103 (66.99%), Postives = 75/103 (72.82%), Query Frame = 3 
Query:  384 VDLFARTWQSLDFGVVLENLSDECRTAEGRRMALVPDFKDTLEEVHELYECVTEVLKLPG-GVPLRGFLDVEGVLAVAAQGSILEAPEIVDMARVLQALQGLR 689
            VDLFARTW+SLDFGVVLE LS ECRT  GR  AL+PDFK TLEEVHELYE V EVL L G  VPLR  + VE  LA+AA GS LEA EI  +A  L+ L  LR
Sbjct:  153 VDLFARTWESLDFGVVLERLSRECRTEMGRSRALIPDFKTTLEEVHELYERVNEVLLLAGDAVPLRAGMAVEPQLAIAAAGSTLEATEIAAVASALEGLFELR 255
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BLAST of mRNA_S-ischiensis_contig11.2096.1 vs. uniprot
Match: D8LGP1_ECTSI (MutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1 n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LGP1_ECTSI)

HSP 1 Score: 121 bits (304), Expect = 5.140e-28
Identity = 68/103 (66.02%), Postives = 74/103 (71.84%), Query Frame = 3 
Query:  384 VDLFARTWQSLDFGVVLENLSDECRTAEGRRMALVPDFKDTLEEVHELYECVTEVLKLPG-GVPLRGFLDVEGVLAVAAQGSILEAPEIVDMARVLQALQGLR 689
            VDLFARTW+SLDFGVVLE LS ECRT  GR  AL+PDFK TLEEVHELYE V EVL L G  VPLR  + VE  LA+AA GS LE  EI  +A  L+ L  LR
Sbjct:   36 VDLFARTWESLDFGVVLERLSRECRTEMGRSRALIPDFKTTLEEVHELYERVNEVLLLAGDAVPLRAGMAVEPQLAIAAAGSTLEPTEIAAVASALEGLFELR 138
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BLAST of mRNA_S-ischiensis_contig11.2096.1 vs. uniprot
Match: A0A835YZI9_9STRA (Muts protein-like protein 1B muts-like ATPase n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YZI9_9STRA)

HSP 1 Score: 104 bits (260), Expect = 3.800e-22
Identity = 53/102 (51.96%), Postives = 71/102 (69.61%), Query Frame = 3 
Query:  384 VDLFARTWQSLDFGVVLENLSDECRTAEGRRMALVPDFKDTLEEVHELYECVTEVLKLPGGVPLRGFLDVEGVLAVAAQGSILEAPEIVDMARVLQALQGLR 689
            VDLFARTW+SLDFGVVLE+LS EC TA GR+ AL  DFK  +E V  LY  V EV  L   VP+   +D+E ++A+AA+G+ LE PE+ +++  L +L  L+
Sbjct:   29 VDLFARTWESLDFGVVLEHLSKECWTAMGRKAALKADFKADVESVQALYRGVEEVYSLTEPVPIASGMDIEAIIALAAKGTTLEPPELREVSDCLTSLSNLK 130
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BLAST of mRNA_S-ischiensis_contig11.2096.1 vs. uniprot
Match: A0A7S3Y253_HETAK (Hypothetical protein (Fragment) n=1 Tax=Heterosigma akashiwo TaxID=2829 RepID=A0A7S3Y253_HETAK)

HSP 1 Score: 94.0 bits (232), Expect = 5.640e-19
Identity = 50/102 (49.02%), Postives = 64/102 (62.75%), Query Frame = 3 
Query:  384 VDLFARTWQSLDFGVVLENLSDECRTAEGRRMALVPDFKDTLEEVHELYECVTEVLKLPGGVPLRGFLDVEGVLAVAAQGSILEAPEIVDMARVLQALQGLR 689
            VDL ARTWQSLDF V+L+ L+  C+TA G+R A  P F  +  E    Y  V EV      VPLR  +DVE  LA+AAQG++LE PE+ ++A  L+ L  LR
Sbjct:   94 VDLEARTWQSLDFQVLLDGLAKYCQTAMGQRKARAPHFAGSAAEARARYTAVREVWDCVDPVPLRSGMDVEAQLALAAQGTVLEVPELREVAAALEGLAALR 195
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BLAST of mRNA_S-ischiensis_contig11.2096.1 vs. uniprot
Match: A0A0G4ECS6_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4ECS6_VITBC)

HSP 1 Score: 65.9 bits (159), Expect = 8.000e-9
Identity = 48/155 (30.97%), Postives = 73/155 (47.10%), Query Frame = 3 
Query:  213 SSFRGAWQPLLPTIPLQNERRQPRRTVRHRCSASAVSGGPPDHDVVQETEAGQTRRAVDLFARTWQSLDFGVVLENLSDECRTAEGRRMALVPDFKDTLEEVHELYECVTEVLKLPGGVPLRGFLDVEGVLAVAAQGSILEAPEIVDMARVLQAL 677
            S+FR    P     PL             R  A A+S  P   D +           +DLF RTWQSLD+ VV+ +L++   T+ GRR+A    F  + +E   LYE V +V +L   +P    LD+E ++ V+ +G    +  + D+ R+  AL
Sbjct:   21 SAFRILPHPARTRAPLDR-----------RWHAMAMSALPMSDDALH----------LDLFERTWQSLDWRVVMASLAEAASTSPGRRLARSASFAGSHDECLVLYEQVGDVRRLSEQLPFATSLDIEHLVNVSDEGRARSSFSLPDLYRIGTAL 154
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2096.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 5
Match NameE-valueIdentityDescription
A0A6H5JAB7_9PHAE1.040e-2866.99DNA_MISMATCH_REPAIR_2 domain-containing protein n=... [more]
D8LGP1_ECTSI5.140e-2866.02MutS protein homolog 1B MutS-like ATPases involved... [more]
A0A835YZI9_9STRA3.800e-2251.96Muts protein-like protein 1B muts-like ATPase n=1 ... [more]
A0A7S3Y253_HETAK5.640e-1949.02Hypothetical protein (Fragment) n=1 Tax=Heterosigm... [more]
A0A0G4ECS6_VITBC8.000e-930.97Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1164269..1165361 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score118.6
Seed ortholog evalue3.3e-24
Seed eggNOG ortholog2880.D8LGP1
KEGG koko:K07456
KEGG Pathwayko03430,map03430
GOsGO:0003674,GO:0003676,GO:0003677,GO:0003684,GO:0003690,GO:0003824,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0006139,GO:0006259,GO:0006281,GO:0006298,GO:0006725,GO:0006807,GO:0006950,GO:0006974,GO:0008094,GO:0008150,GO:0008152,GO:0009987,GO:0016462,GO:0016787,GO:0016817,GO:0016818,GO:0016887,GO:0017111,GO:0030983,GO:0032300,GO:0032991,GO:0033554,GO:0034641,GO:0042623,GO:0043170,GO:0044237,GO:0044238,GO:0044260,GO:0044424,GO:0044464,GO:0046483,GO:0050896,GO:0051716,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990391
EggNOG free text desc.DNA mismatch repair protein
EggNOG OGs2QRQR@2759,COG1193@1
Ec32 ortholog descriptionMutS protein homolog 1B MutS-like ATPases involved in mismatch repair, family 1
Ec32 orthologEc-10_002970.1
COG Functional cat.L
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko03400
Hectar predicted targeting categorysignal peptide
Exons2
Model size689
Cds size606
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2096.1prot_S-ischiensis_contig11.2096.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1164269..1165278 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.274834-CDS-S-ischiensis_contig11:1164268..11644421622815597.274834-CDS-S-ischiensis_contig11:1164268..1164442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1164269..1164442 -
1695739793.55584-CDS-S-ischiensis_contig11:1164268..11644421695739793.55584-CDS-S-ischiensis_contig11:1164268..1164442Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1164269..1164442 -
1622815597.2858913-CDS-S-ischiensis_contig11:1164846..11652781622815597.2858913-CDS-S-ischiensis_contig11:1164846..1165278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1164847..1165278 -
1695739793.5662282-CDS-S-ischiensis_contig11:1164846..11652781695739793.5662282-CDS-S-ischiensis_contig11:1164846..1165278Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1164847..1165278 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815597.2965534-UTR-S-ischiensis_contig11:1165278..11653611622815597.2965534-UTR-S-ischiensis_contig11:1165278..1165361Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1165279..1165361 -
1695739793.5751722-UTR-S-ischiensis_contig11:1165278..11653611695739793.5751722-UTR-S-ischiensis_contig11:1165278..1165361Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1165279..1165361 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2096.1

>prot_S-ischiensis_contig11.2096.1 ID=prot_S-ischiensis_contig11.2096.1|Name=mRNA_S-ischiensis_contig11.2096.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=202bp
MAPASKVFFAALVALISSPRGSTFHQGCAKCASVRGWARGRETSSFRGAW
QPLLPTIPLQNERRQPRRTVRHRCSASAVSGGPPDHDVVQETEAGQTRRA
VDLFARTWQSLDFGVVLENLSDECRTAEGRRMALVPDFKDTLEEVHELYE
CVTEVLKLPGGVPLRGFLDVEGVLAVAAQGSILEAPEIVDMARVLQALQG
LR
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mRNA from alignment at S-ischiensis_contig11:1164269..1165361-

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2096.1 ID=mRNA_S-ischiensis_contig11.2096.1|Name=mRNA_S-ischiensis_contig11.2096.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1093bp|location=Sequence derived from alignment at S-ischiensis_contig11:1164269..1165361- (Schizocladia ischiensis KU_0333)
CATGCCGTGGCAACTCAGGGTAAGTCGACATCAATACGGGGGCTGCTTGG
TTGTCGAGCCTTCGGCCTTCTTCCCGACGGCGAATGGCACCTGCTAGCAA
GGTATTCTTTGCAGCGCTTGTCGCTCTTATCTCTTCCCCACGTGGTTCAA
CATTCCACCAGGGATGCGCAAAGTGTGCAAGTGTACGTGGTTGGGCACGT
GGTCGTGAAACTAGCAGCTTCAGGGGCGCATGGCAGCCCCTCCTGCCCAC
AATTCCTTTGCAGAATGAACGAAGGCAGCCAAGGCGAACCGTCAGGCACC
GCTGTAGTGCCTCCGCGGTCTCGGGGGGGCCTCCTGACCATGATGTGGTG
CAAGAGACGGAGGCAGGGCAGACACGACGGGCGGTCGACCTGTTTGCGCG
GACGTGGCAATCCCTGGACTTCGGTGTGGTGCTAGAGAATCTGTCTGATG
AGTGTCGGACAGCGGAGGGGCGCCGAATGGCCCTGGTGCCAGACTTCAAG
GACACCCTGGAAGAGGTGAGGACAAGGTGCCGGCAGGTGTGAGTGGGTGC
ACGTGCGGGAGGTGCATCGCCTGCCAGGAGCACTACAACTGCGCAATTGT
AACTGTAGGGCCGTGGCTCGATCCTGTTCGGTCTTCTCGATTCGAGAATT
ATCAAAAGGCAACGGACGCTGTCCAATTGCCAATGGGGTTTTCCTTTTGT
CCTTGCTCCTCTGCAAACACACAGTGTATACTGCTACTCCTGTACGAGCA
GACCACTGCCACCCACCCCCATCCAAGATCGGTGCCGCTCGCTTTGAAAC
AATGGCGGCCTTGTTATTCACGTACACTATGGGTACCTCGTACGCTAGAG
CCTACATACTTAGTACACCTGTCGCCCCGGGCCCACTACCCATCGCACCC
ACACCCTCCCTGCCCCAAGGTCCACGAGTTGTACGAGTGCGTGACCGAAG
TGCTGAAGCTCCCGGGGGGTGTGCCGCTGAGGGGGTTCTTGGATGTGGAA
GGCGTCCTGGCTGTGGCGGCCCAGGGAAGCATCCTGGAGGCCCCGGAGAT
TGTGGACATGGCGAGGGTGTTGCAGGCCTTGCAGGGGCTGAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1164269..1165361-

>mRNA_S-ischiensis_contig11.2096.1 ID=mRNA_S-ischiensis_contig11.2096.1|Name=mRNA_S-ischiensis_contig11.2096.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1212bp|location=Sequence derived from alignment at S-ischiensis_contig11:1164269..1165361- (Schizocladia ischiensis KU_0333)
ATGGCACCTGCTAGCAAGGTATTCTTTGCAGCGCTTGTCGCTCTTATCTC
TTCCCCACGTGGTTCAACATTCCACCAGGGATGCGCAAAGTGTGCAAGTG
TACGTGGTTGGGCACGTGGTCGTGAAACTAGCAGCTTCAGGGGCGCATGG
CAGCCCCTCCTGCCCACAATTCCTTTGCAGAATGAACGAAGGCAGCCAAG
GCGAACCGTCAGGCACCGCTGTAGTGCCTCCGCGGTCTCGGGGGGGCCTC
CTGACCATGATGTGGTGCAAGAGACGGAGGCAGGGCAGACACGACGGGCG
GTCGACCTGTTTGCGCGGACGTGGCAATCCCTGGACTTCGGTGTGGTGCT
AGAGAATCTGTCTGATGAGTGTCGGACAGCGGAGGGGCGCCGAATGGCCC
TGGTGCCAGACTTCAAGGACACCCTGGAAGAGATGGCACCTGCTAGCAAG
GTATTCTTTGCAGCGCTTGTCGCTCTTATCTCTTCCCCACGTGGTTCAAC
ATTCCACCAGGGATGCGCAAAGTGTGCAAGTGTACGTGGTTGGGCACGTG
GTCGTGAAACTAGCAGCTTCAGGGGCGCATGGCAGCCCCTCCTGCCCACA
ATTCCTTTGCAGAATGAACGAAGGCAGCCAAGGCGAACCGTCAGGCACCG
CTGTAGTGCCTCCGCGGTCTCGGGGGGGCCTCCTGACCATGATGTGGTGC
AAGAGACGGAGGCAGGGCAGACACGACGGGCGGTCGACCTGTTTGCGCGG
ACGTGGCAATCCCTGGACTTCGGTGTGGTGCTAGAGAATCTGTCTGATGA
GTGTCGGACAGCGGAGGGGCGCCGAATGGCCCTGGTGCCAGACTTCAAGG
ACACCCTGGAAGAGGTCCACGAGTTGTACGAGTGCGTGACCGAAGTGCTG
AAGCTCCCGGGGGGTGTGCCGCTGAGGGGGTTCTTGGATGTGGAAGGCGT
CCTGGCTGTGGCGGCCCAGGGAAGCATCCTGGAGGCCCCGGAGATTGTGG
ACATGGCGAGGGTGTTGCAGGCCTTGCAGGGGCTGAGGGTCCACGAGTTG
TACGAGTGCGTGACCGAAGTGCTGAAGCTCCCGGGGGGTGTGCCGCTGAG
GGGGTTCTTGGATGTGGAAGGCGTCCTGGCTGTGGCGGCCCAGGGAAGCA
TCCTGGAGGCCCCGGAGATTGTGGACATGGCGAGGGTGTTGCAGGCCTTG
CAGGGGCTGAGG
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