mRNA_S-ischiensis_contig11.2086.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2086.1
Unique NamemRNA_S-ischiensis_contig11.2086.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2086.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:1055297..1055814 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons1
Model size518
Cds size333
Stop1
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.5752766-CDS-S-ischiensis_contig11:1055296..10556291622815582.5752766-CDS-S-ischiensis_contig11:1055296..1055629Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1055297..1055629 +
1695739784.255949-CDS-S-ischiensis_contig11:1055296..10556291695739784.255949-CDS-S-ischiensis_contig11:1055296..1055629Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 1055297..1055629 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.5861328-UTR-S-ischiensis_contig11:1055629..10558141622815582.5861328-UTR-S-ischiensis_contig11:1055629..1055814Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1055630..1055814 +
1695739784.2687783-UTR-S-ischiensis_contig11:1055629..10558141695739784.2687783-UTR-S-ischiensis_contig11:1055629..1055814Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 1055630..1055814 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2086.1prot_S-ischiensis_contig11.2086.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 1055297..1055629 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2086.1

>prot_S-ischiensis_contig11.2086.1 ID=prot_S-ischiensis_contig11.2086.1|Name=mRNA_S-ischiensis_contig11.2086.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=111bp
MLSCRCAGHILIAIAVELVLGGSGGRGLARGWPVEVGEEEQVVNTIASLS
IRLCSFPRECREGSGGGGPRREGGGYLRNFSEPGERERPRGEQRLPAPAA
TGEVFVAQLL*
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mRNA from alignment at S-ischiensis_contig11:1055297..1055814+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2086.1 ID=mRNA_S-ischiensis_contig11.2086.1|Name=mRNA_S-ischiensis_contig11.2086.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=518bp|location=Sequence derived from alignment at S-ischiensis_contig11:1055297..1055814+ (Schizocladia ischiensis KU_0333)
ATGTTGTCATGTAGATGCGCCGGTCATATATTGATTGCCATTGCGGTGGA
ACTTGTGCTTGGGGGCAGCGGCGGCCGGGGCTTGGCGCGTGGCTGGCCGG
TTGAGGTCGGGGAAGAAGAACAAGTTGTGAATACTATAGCGAGTCTCTCG
ATACGATTGTGTAGTTTTCCGAGGGAGTGCCGTGAGGGCAGCGGGGGGGG
AGGGCCCAGGAGGGAGGGAGGGGGTTATCTCCGGAATTTTTCGGAACCTG
GTGAGCGGGAGCGGCCCAGAGGCGAACAGCGCTTGCCCGCACCCGCCGCC
ACGGGGGAGGTTTTTGTTGCACAGTTACTGTGACAGTCCATGTATACTTG
CAAGCGCGTCCAAGTACCATACCCAGAATGTGTTATCATGCCTGTGTGCC
CGCCGCGCTGACAGACACCCGCCGGCTGTTTTGTGTTTCTTGTGTCCCCC
CCAGGCCACCTGCCCTGAAGTTGAAGACCGTTTCAATGACATGATAATGA
CAAACACGTCTTTAGACT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:1055297..1055814+

>mRNA_S-ischiensis_contig11.2086.1 ID=mRNA_S-ischiensis_contig11.2086.1|Name=mRNA_S-ischiensis_contig11.2086.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=666bp|location=Sequence derived from alignment at S-ischiensis_contig11:1055297..1055814+ (Schizocladia ischiensis KU_0333)
ATGTTGTCATGTAGATGCGCCGGTCATATATTGATTGCCATTGCGGTGGA
ACTTGTGCTTGGGGGCAGCGGCGGCCGGGGCTTGGCGCGTGGCTGGCCGG
TTGAGGTCGGGGAAGAAGAACAAGTTGTGAATACTATAGCGAGTCTCTCG
ATACGATTGTGTAGTTTTCCGAGGGAGTGCCGTGAGGGCAGCGGGGGGGG
AGGGCCCAGGAGGGAGGGAGGGGGTTATCTCCGGAATTTTTCGGAACCTG
GTGAGCGGGAGCGGCCCAGAGGCGAACAGCGCTTGCCCGCACCCGCCGCC
ACGGGGGAGGTTTTTGTTGCACAGTTACTGTGAATGTTGTCATGTAGATG
CGCCGGTCATATATTGATTGCCATTGCGGTGGAACTTGTGCTTGGGGGCA
GCGGCGGCCGGGGCTTGGCGCGTGGCTGGCCGGTTGAGGTCGGGGAAGAA
GAACAAGTTGTGAATACTATAGCGAGTCTCTCGATACGATTGTGTAGTTT
TCCGAGGGAGTGCCGTGAGGGCAGCGGGGGGGGAGGGCCCAGGAGGGAGG
GAGGGGGTTATCTCCGGAATTTTTCGGAACCTGGTGAGCGGGAGCGGCCC
AGAGGCGAACAGCGCTTGCCCGCACCCGCCGCCACGGGGGAGGTTTTTGT
TGCACAGTTACTGTGA
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