mRNA_S-ischiensis_contig11.2068.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2068.1
Unique NamemRNA_S-ischiensis_contig11.2068.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2068.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:881929..883818 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size339
Cds size336
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815577.1651485-CDS-S-ischiensis_contig11:881928..8821551622815577.1651485-CDS-S-ischiensis_contig11:881928..882155Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 881929..882155 +
1695739781.3072178-CDS-S-ischiensis_contig11:881928..8821551695739781.3072178-CDS-S-ischiensis_contig11:881928..882155Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 881929..882155 +
1622815577.1791952-CDS-S-ischiensis_contig11:883708..8838171622815577.1791952-CDS-S-ischiensis_contig11:883708..883817Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 883709..883817 +
1695739781.3157911-CDS-S-ischiensis_contig11:883708..8838171695739781.3157911-CDS-S-ischiensis_contig11:883708..883817Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 883709..883817 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2068.1prot_S-ischiensis_contig11.2068.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 881929..883817 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2068.1

>prot_S-ischiensis_contig11.2068.1 ID=prot_S-ischiensis_contig11.2068.1|Name=mRNA_S-ischiensis_contig11.2068.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=112bp
RAQAVRSFKGTSHERPERGLLHVIIIAVADCKSSGADRHRWRGATATRTA
SSRRTGNVGRRSPYRRLAARTPPRSRAPPPSTSQGGFSLFTVVVFVALSA
PFVMLWGRQHQG
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mRNA from alignment at S-ischiensis_contig11:881929..883818+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2068.1 ID=mRNA_S-ischiensis_contig11.2068.1|Name=mRNA_S-ischiensis_contig11.2068.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1890bp|location=Sequence derived from alignment at S-ischiensis_contig11:881929..883818+ (Schizocladia ischiensis KU_0333)
CGCGCACAAGCGGTCAGGAGTTTTAAGGGCACAAGCCATGAGCGTCCAGA
ACGGGGCCTCCTTCACGTAATAATCATTGCTGTGGCGGACTGCAAATCGT
CAGGTGCCGACCGGCACCGGTGGCGGGGTGCCACGGCGACGAGGACGGCG
AGCTCGAGGCGCACTGGCAATGTCGGTCGTCGGTCGCCATATAGACGACT
TGCTGCGCGCACGCCCCCCAGATCGAGGTAAGAGTGCCCCTGGAAAGCGT
TCCTGGCGCATGAGCTGAGGAAAATCCCTATGTCGTGGTTCTACAGAGAC
GGAATTCTCCGCGGGGTCCGCCGAAGAACATTGCGGCCGCGTGCATTTAC
ACCGTCTCTTTCTCTCCCTTTTGGCACACTGGGGTAGCGCATATCACCGC
CAGTCCCATCTCTCGGCCGTTAAGCTGCGTAAGTGTCCCTTCTTCAACAT
TGAACAAGGCATGGCACCACTCCAGCTGCTGGGAGGAGGGCGACAAACCT
TGTGCATTGCCTCTTGCCGCGTGTGCCGCAATTGCATTGACCACGCGAGC
CCGAAAAGGAGTAAGTGCCTTTTCATCTGCTAAGGGCTCGCTGGGGGGGT
CCTGCCTGAGGCAGGATGGCTGGGTGTCCTGCACAAAACCCTTTGAGGAC
TGGGTACCCCAAATTCGTACCTCACAAGTACCCGGGCGGCGTTTTCTGTT
CTCTGTTCTAGCAATAGTGTACCCTTCGCGAGAGGTACCACCCCCCGAAG
CTTTACATTTTTGCCAAGGGCTGGCACCCGGGTCGCACTACTTGGACTTC
GGGGAGGTACGCCGAGTTCCCGGCGGAACCACCCAGCACCGGTGTGTGTA
CTCACGTCTCTGTGCATGCCCTGGACCCGAACGATCCTCGACTGGTGCCC
GCCAAAACTCCCGTACCTCCCCAAATTTCAAGCAGTCCACTGGGACGGCA
CCCGCCGGGTACCAGGTGTCAACGGGGCGTCAAAAGGCCTCGAGCCGGCC
CGTCGGCCCGGGCCCTTGGCATGAAATATTGCCGGTCGATAACTCCAAAC
CCCGGCAGCGCGTCGAGGGACAAGCAGCACTTTGCCCTCGTTCTGTCATG
TGAACCCACATTGCGACGTGTTAGTTGCCAAGTTGCTCGCTCCACACTCT
CTGCGGCCATGATGGTTAAATGGCTATGCAATATGAGGCGCGGGGTCAAT
GCTCTCGGGACTACGGCAAGCACCGCGTGAGTACACACACACACACACAT
ATATATGTAGTATGGGCATGTATCTGCAGTGTGCGAGCGTGTGTGCGCAC
TCTTCGTCGTTCAATTGCCGCTTGCCGTGGGACTGGGGCTGTGACCGCGA
GCTCAGACGAGCGATGGGAACACTTTTGGCCTTCACAGTGCCGTGCATTT
TGCTAGGCGTGCCCCAGAACTGGCCAATGGGCGGAACATGCAACATGCTC
ACCTGCTCCCAATCGCTTCAGGTGCGCAACGGTTGAGTAGGTATAACAGC
AGGCGGCGAAGCGTTCAGGAGGTACTACAGTACTTACTTCGGCGCAAGTA
GTACGCGAGTATACTACTGTAGCGCCCTGTGCCGTAGTACTGCAGCACTC
GAGAGTAGGTACTCGCAAGCCCGTTTCTCAGCCCGCAGGCTCCATCCTGG
CCGTGTCCGTCCCGTGCATGCACCTCTTCTCAGCAGCCGCTGTCTGGCCG
TGGCCTGACTCATCTCCCCCCCCCCATCCCTTGCCCCGCCCTGCCCCTCT
CCCGCGACACTGCCGGACGGATGGGCCCAGGGCGCCACCACCAAGCACTT
CACAGGGGGGGTTCTCGCTCTTCACGGTTGTGGTTTTTGTGGCCCTGAGC
GCCCCTTTTGTGATGTTGTGGGGCCGTCAGCACCAGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:881929..883818+

>mRNA_S-ischiensis_contig11.2068.1 ID=mRNA_S-ischiensis_contig11.2068.1|Name=mRNA_S-ischiensis_contig11.2068.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=672bp|location=Sequence derived from alignment at S-ischiensis_contig11:881929..883818+ (Schizocladia ischiensis KU_0333)
CGCGCACAAGCGGTCAGGAGTTTTAAGGGCACAAGCCATGAGCGTCCAGA
ACGGGGCCTCCTTCACGTAATAATCATTGCTGTGGCGGACTGCAAATCGT
CAGGTGCCGACCGGCACCGGTGGCGGGGTGCCACGGCGACGAGGACGGCG
AGCTCGAGGCGCACTGGCAATGTCGGTCGTCGGTCGCCATATAGACGACT
TGCTGCGCGCACGCCCCCCAGATCGAGCGCGCACAAGCGGTCAGGAGTTT
TAAGGGCACAAGCCATGAGCGTCCAGAACGGGGCCTCCTTCACGTAATAA
TCATTGCTGTGGCGGACTGCAAATCGTCAGGTGCCGACCGGCACCGGTGG
CGGGGTGCCACGGCGACGAGGACGGCGAGCTCGAGGCGCACTGGCAATGT
CGGTCGTCGGTCGCCATATAGACGACTTGCTGCGCGCACGCCCCCCAGAT
CGAGGGCGCCACCACCAAGCACTTCACAGGGGGGGTTCTCGCTCTTCACG
GTTGTGGTTTTTGTGGCCCTGAGCGCCCCTTTTGTGATGTTGTGGGGCCG
TCAGCACCAGGGGGGCGCCACCACCAAGCACTTCACAGGGGGGGTTCTCG
CTCTTCACGGTTGTGGTTTTTGTGGCCCTGAGCGCCCCTTTTGTGATGTT
GTGGGGCCGTCAGCACCAGGGG
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