mRNA_S-ischiensis_contig11.2061.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2061.1
Unique NamemRNA_S-ischiensis_contig11.2061.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2061.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:809619..810275 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size658
Cds size657
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.4803593-CDS-S-ischiensis_contig11:809618..8102751622815582.4803593-CDS-S-ischiensis_contig11:809618..810275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 809619..810275 +
1695739784.2211008-CDS-S-ischiensis_contig11:809618..8102751695739784.2211008-CDS-S-ischiensis_contig11:809618..810275Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 809619..810275 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2061.1prot_S-ischiensis_contig11.2061.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 809619..810275 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2061.1

>prot_S-ischiensis_contig11.2061.1 ID=prot_S-ischiensis_contig11.2061.1|Name=mRNA_S-ischiensis_contig11.2061.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=219bp
RRRRRYAAATRPMRGGRGALYPLKCDDALPAARHKARLPGVPAGAPPCHA
VGALRSVAGAGWAAAAAAAARGRRRRRGGYPTAAHIRQRHLDLVGIDGPV
LELLPAGTDPAMDPGRGNGPARRTHGCGRDRPPGLRPRLPGPAPRTPGGV
PAPGLSAGTGARACAAGARSAPAAAAGLGARPPPSRAAAGAILERRGEPR
DLRGGGPRGFGDAGRGVLP
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mRNA from alignment at S-ischiensis_contig11:809619..810275+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2061.1 ID=mRNA_S-ischiensis_contig11.2061.1|Name=mRNA_S-ischiensis_contig11.2061.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=657bp|location=Sequence derived from alignment at S-ischiensis_contig11:809619..810275+ (Schizocladia ischiensis KU_0333)
AGGAGGAGGCGCAGATATGCCGCAGCTACCCGACCCATGCGAGGCGGAAG
AGGTGCGCTATATCCACTCAAATGTGACGATGCTCTTCCAGCAGCCCGAC
ACAAGGCTCGACTACCGGGCGTACCTGCTGGGGCACCGCCGTGCCATGCT
GTTGGTGCTCTCCGTTCTGTCGCTGGTGCTGGGTGGGCTGCTGCCGCTGC
TGCTGCTGCTCGAGGTCGCCGAAGAAGACGGGGAGGCTACCCCACAGCTG
CACATATCCGCCAGCGTCATCTTGATCTTGTCGGGATCGATGGGCCTGTG
CTGGAGCTTCTGCCCGCCGGAACTGATCCAGCGATGGACCCAGGCCGTGG
GAATGGCCCTGCACGGCGAACTCATGGTTGTGGGCGCGATCGTCCTCCTG
GACTACGCCCTCGCCTTCCAGGGCCCGCACCGCGCACGCCAGGGGGGGTT
CCTGCCCCTGGCCTTTCTGCTGGCACTGGAGCACGTGCTTGCGCTGCTGG
GGCTCGGTCTGCACCCGCCGCTGCCGCTGGTCTTGGCGCTCGACCTCCTC
CCAGCCGCGCAGCTGCTGGGGCTATCCTTGAGCGCCGGGGGGAGCCCCGC
GATCTCCGTGGCGGCGGCCCTCGTGGTTTTGGCGACGCTGGCCGCGGCGT
CCTTCCT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:809619..810275+

>mRNA_S-ischiensis_contig11.2061.1 ID=mRNA_S-ischiensis_contig11.2061.1|Name=mRNA_S-ischiensis_contig11.2061.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1314bp|location=Sequence derived from alignment at S-ischiensis_contig11:809619..810275+ (Schizocladia ischiensis KU_0333)
AGGAGGAGGCGCAGATATGCCGCAGCTACCCGACCCATGCGAGGCGGAAG
AGGTGCGCTATATCCACTCAAATGTGACGATGCTCTTCCAGCAGCCCGAC
ACAAGGCTCGACTACCGGGCGTACCTGCTGGGGCACCGCCGTGCCATGCT
GTTGGTGCTCTCCGTTCTGTCGCTGGTGCTGGGTGGGCTGCTGCCGCTGC
TGCTGCTGCTCGAGGTCGCCGAAGAAGACGGGGAGGCTACCCCACAGCTG
CACATATCCGCCAGCGTCATCTTGATCTTGTCGGGATCGATGGGCCTGTG
CTGGAGCTTCTGCCCGCCGGAACTGATCCAGCGATGGACCCAGGCCGTGG
GAATGGCCCTGCACGGCGAACTCATGGTTGTGGGCGCGATCGTCCTCCTG
GACTACGCCCTCGCCTTCCAGGGCCCGCACCGCGCACGCCAGGGGGGGTT
CCTGCCCCTGGCCTTTCTGCTGGCACTGGAGCACGTGCTTGCGCTGCTGG
GGCTCGGTCTGCACCCGCCGCTGCCGCTGGTCTTGGCGCTCGACCTCCTC
CCAGCCGCGCAGCTGCTGGGGCTATCCTTGAGCGCCGGGGGGAGCCCCGC
GATCTCCGTGGCGGCGGCCCTCGTGGTTTTGGCGACGCTGGCCGCGGCGT
CCTTCCTAGGAGGAGGCGCAGATATGCCGCAGCTACCCGACCCATGCGAG
GCGGAAGAGGTGCGCTATATCCACTCAAATGTGACGATGCTCTTCCAGCA
GCCCGACACAAGGCTCGACTACCGGGCGTACCTGCTGGGGCACCGCCGTG
CCATGCTGTTGGTGCTCTCCGTTCTGTCGCTGGTGCTGGGTGGGCTGCTG
CCGCTGCTGCTGCTGCTCGAGGTCGCCGAAGAAGACGGGGAGGCTACCCC
ACAGCTGCACATATCCGCCAGCGTCATCTTGATCTTGTCGGGATCGATGG
GCCTGTGCTGGAGCTTCTGCCCGCCGGAACTGATCCAGCGATGGACCCAG
GCCGTGGGAATGGCCCTGCACGGCGAACTCATGGTTGTGGGCGCGATCGT
CCTCCTGGACTACGCCCTCGCCTTCCAGGGCCCGCACCGCGCACGCCAGG
GGGGGTTCCTGCCCCTGGCCTTTCTGCTGGCACTGGAGCACGTGCTTGCG
CTGCTGGGGCTCGGTCTGCACCCGCCGCTGCCGCTGGTCTTGGCGCTCGA
CCTCCTCCCAGCCGCGCAGCTGCTGGGGCTATCCTTGAGCGCCGGGGGGA
GCCCCGCGATCTCCGTGGCGGCGGCCCTCGTGGTTTTGGCGACGCTGGCC
GCGGCGTCCTTCCT
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