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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 962 |
| Cds size | 573 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815582.4274669-UTR-S-ischiensis_contig11:808354..808471 | 1622815582.4274669-UTR-S-ischiensis_contig11:808354..808471 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 808355..808471 + |
| 1695739784.1920917-UTR-S-ischiensis_contig11:808354..808471 | 1695739784.1920917-UTR-S-ischiensis_contig11:808354..808471 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 808355..808471 + |
| 1622815582.4463432-UTR-S-ischiensis_contig11:809044..809316 | 1622815582.4463432-UTR-S-ischiensis_contig11:809044..809316 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 809045..809316 + |
| 1695739784.2110882-UTR-S-ischiensis_contig11:809044..809316 | 1695739784.2110882-UTR-S-ischiensis_contig11:809044..809316 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig11 809045..809316 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815582.437255-CDS-S-ischiensis_contig11:808471..809044 | 1622815582.437255-CDS-S-ischiensis_contig11:808471..809044 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 808472..809044 + |
| 1695739784.2033894-CDS-S-ischiensis_contig11:808471..809044 | 1695739784.2033894-CDS-S-ischiensis_contig11:808471..809044 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig11 808472..809044 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2060.1 >prot_S-ischiensis_contig11.2060.1 ID=prot_S-ischiensis_contig11.2060.1|Name=mRNA_S-ischiensis_contig11.2060.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=191bp
MESTNRTLTQTTVVRVHIQVPCVRHPSPPPYVGRARIKPIVALPHPREII
IQLLTTVYHFYLVSCQARVWLSLDRALELRQLLMGTHRTCLQLEVLLDLR
SSTQPDSSTGARIAGPSTMRPARRYQRGQWQLVQRMLKTSQAQALTSCST
NDTATFKFNTYNLLVPCETLSANIYKFALKQLHDKRSRHP* back to topmRNA from alignment at S-ischiensis_contig11:808355..809316+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig11.2060.1 ID=mRNA_S-ischiensis_contig11.2060.1|Name=mRNA_S-ischiensis_contig11.2060.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=962bp|location=Sequence derived from alignment at S-ischiensis_contig11:808355..809316+ (Schizocladia ischiensis KU_0333)
GGCAAGTATTTTCCTTACGCTCCACATTTGGTTGGGCCAGACAGCCCACT
TCTGACCTGTCCCCTCGACAGCCCACTTCCGACCCCCCTCGGGTGCACGG
TAAATGGCCCAAGGGCTATGGAGAGCACCAACCGAACGCTCACACAAACT
ACAGTAGTACGAGTACACATACAAGTACCATGCGTGAGGCATCCAAGTCC
TCCACCCTATGTAGGCCGGGCTAGGATAAAACCTATCGTGGCCCTGCCCC
ACCCCAGGGAGATAATTATACAGCTACTTACTACAGTCTATCACTTCTAC
TTAGTTTCATGTCAAGCACGGGTTTGGTTATCACTCGATCGAGCCCTTGA
GCTCAGACAACTGCTCATGGGCACCCACCGCACGTGCCTACAATTGGAGG
TGCTATTGGACTTGCGGTCCTCAACACAGCCAGATTCCTCGACAGGAGCA
CGAATAGCCGGGCCTTCTACCATGCGCCCTGCACGACGGTACCAACGCGG
CCAATGGCAACTTGTGCAGCGCATGCTCAAAACCAGCCAAGCGCAAGCAT
TGACCAGTTGCAGTACGAACGACACGGCGACGTTCAAATTCAATACCTAC
AACCTACTTGTGCCATGTGAAACCCTGTCGGCCAATATTTACAAGTTTGC
GCTCAAGCAACTCCACGACAAACGGAGTCGCCATCCATGAGGGGGGTCCC
AGAAATGCTACTGTACACACTGCGCGCTGGTAACGCACAAATCCCCACGA
CGGGCCTGACGGGCCACGCGAGAACAGCTCCTGAACGAATCTACTGTACG
AGTGCAAGCAGGAGGCGACAATGAAGAGCCTGCTGCGGTCGCACGTGCAC
AAATGGCGGAGAACAAACCGCACATTTACATGCATACTTACATATTGCCC
ACGGCTTGCAGCCTGTAGCTCGTATGCACAAGTAGCTCGTATGGACAAGC
TGAGTGCACTCT back to topCoding sequence (CDS) from alignment at S-ischiensis_contig11:808355..809316+ >mRNA_S-ischiensis_contig11.2060.1 ID=mRNA_S-ischiensis_contig11.2060.1|Name=mRNA_S-ischiensis_contig11.2060.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1146bp|location=Sequence derived from alignment at S-ischiensis_contig11:808355..809316+ (Schizocladia ischiensis KU_0333)
ATGGAGAGCACCAACCGAACGCTCACACAAACTACAGTAGTACGAGTACA
CATACAAGTACCATGCGTGAGGCATCCAAGTCCTCCACCCTATGTAGGCC
GGGCTAGGATAAAACCTATCGTGGCCCTGCCCCACCCCAGGGAGATAATT
ATACAGCTACTTACTACAGTCTATCACTTCTACTTAGTTTCATGTCAAGC
ACGGGTTTGGTTATCACTCGATCGAGCCCTTGAGCTCAGACAACTGCTCA
TGGGCACCCACCGCACGTGCCTACAATTGGAGGTGCTATTGGACTTGCGG
TCCTCAACACAGCCAGATTCCTCGACAGGAGCACGAATAGCCGGGCCTTC
TACCATGCGCCCTGCACGACGGTACCAACGCGGCCAATGGCAACTTGTGC
AGCGCATGCTCAAAACCAGCCAAGCGCAAGCATTGACCAGTTGCAGTACG
AACGACACGGCGACGTTCAAATTCAATACCTACAACCTACTTGTGCCATG
TGAAACCCTGTCGGCCAATATTTACAAGTTTGCGCTCAAGCAACTCCACG
ACAAACGGAGTCGCCATCCATGAATGGAGAGCACCAACCGAACGCTCACA
CAAACTACAGTAGTACGAGTACACATACAAGTACCATGCGTGAGGCATCC
AAGTCCTCCACCCTATGTAGGCCGGGCTAGGATAAAACCTATCGTGGCCC
TGCCCCACCCCAGGGAGATAATTATACAGCTACTTACTACAGTCTATCAC
TTCTACTTAGTTTCATGTCAAGCACGGGTTTGGTTATCACTCGATCGAGC
CCTTGAGCTCAGACAACTGCTCATGGGCACCCACCGCACGTGCCTACAAT
TGGAGGTGCTATTGGACTTGCGGTCCTCAACACAGCCAGATTCCTCGACA
GGAGCACGAATAGCCGGGCCTTCTACCATGCGCCCTGCACGACGGTACCA
ACGCGGCCAATGGCAACTTGTGCAGCGCATGCTCAAAACCAGCCAAGCGC
AAGCATTGACCAGTTGCAGTACGAACGACACGGCGACGTTCAAATTCAAT
ACCTACAACCTACTTGTGCCATGTGAAACCCTGTCGGCCAATATTTACAA
GTTTGCGCTCAAGCAACTCCACGACAAACGGAGTCGCCATCCATGA back to top
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