mRNA_S-ischiensis_contig11.2056.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2056.1
Unique NamemRNA_S-ischiensis_contig11.2056.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2056.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:775097..776181 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1086
Cds size1083
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.3903122-CDS-S-ischiensis_contig11:775096..7761791622815582.3903122-CDS-S-ischiensis_contig11:775096..776179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 775097..776179 +
1695739784.1838071-CDS-S-ischiensis_contig11:775096..7761791695739784.1838071-CDS-S-ischiensis_contig11:775096..776179Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 775097..776179 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2056.1prot_S-ischiensis_contig11.2056.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 775097..776179 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2056.1

>prot_S-ischiensis_contig11.2056.1 ID=prot_S-ischiensis_contig11.2056.1|Name=mRNA_S-ischiensis_contig11.2056.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=361bp
VDRTRVIAGYDFEPRAAGNSHASSLSHTSELEDGDGGGGDGGGSGDDDND
DDNDARSTDPVAPHTNTASPGHGWTWGQPASDESPGTPATSEGAPGVAQG
LGAMPSGGHAVPAGHEPPSAGATQHPPSNVGWIKDLVQGGSAGTPAAADR
SGAPATAGPSPLPAGAATLTQPQKEEAQPGNIDWIKNLVQGGSAAAPPKA
ADRPGAAPAGGPSPPSAGVAALAQPKNEQALPGNIDWIKNLVQGAIAAEA
TAPAGATWPSITPAGGVAVVASPSPLGPPGAGRFSPQAPPLRSPAASHFM
GTIPTEPIRHRSLTPAEEDEAAATRAAAHAAATAPPSAPVPSTAAATTAA
AAAAAAGASTS
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mRNA from alignment at S-ischiensis_contig11:775097..776181+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2056.1 ID=mRNA_S-ischiensis_contig11.2056.1|Name=mRNA_S-ischiensis_contig11.2056.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1085bp|location=Sequence derived from alignment at S-ischiensis_contig11:775097..776181+ (Schizocladia ischiensis KU_0333)
GTGGACAGGACCCGTGTCATTGCTGGGTACGATTTTGAGCCTCGTGCGGC
GGGGAACAGCCATGCCTCTTCGCTAAGCCACACTTCAGAACTCGAAGATG
GCGATGGTGGCGGCGGCGACGGCGGCGGCAGCGGTGACGACGACAACGAC
GATGACAATGACGCGAGGTCCACGGACCCAGTGGCACCACACACAAACAC
AGCTAGCCCGGGCCACGGCTGGACATGGGGCCAACCTGCTTCTGACGAAT
CACCAGGCACACCCGCCACGTCCGAGGGAGCCCCAGGCGTGGCGCAGGGG
CTGGGCGCCATGCCCTCCGGGGGCCACGCCGTACCAGCAGGCCACGAGCC
CCCTTCGGCTGGGGCCACCCAGCACCCGCCATCAAATGTAGGCTGGATCA
AGGACCTCGTCCAGGGGGGTTCGGCGGGCACCCCTGCCGCAGCTGACCGG
TCCGGCGCCCCGGCTACGGCTGGCCCCTCACCCCTGCCGGCGGGGGCCGC
TACCCTCACCCAGCCACAAAAGGAGGAGGCCCAGCCAGGGAACATCGACT
GGATCAAGAACCTCGTCCAGGGTGGTTCGGCTGCTGCCCCCCCCAAAGCA
GCCGACCGGCCCGGCGCTGCGCCTGCAGGCGGCCCCTCCCCCCCATCGGC
GGGGGTCGCTGCCCTGGCCCAACCCAAAAACGAGCAGGCCCTGCCAGGGA
ACATCGACTGGATCAAGAACCTCGTGCAGGGGGCAATCGCCGCAGAGGCA
ACTGCTCCCGCCGGCGCCACCTGGCCCTCCATCACCCCGGCCGGCGGCGT
GGCCGTGGTGGCATCGCCCTCACCGCTGGGGCCACCCGGCGCAGGGAGAT
TCTCTCCGCAGGCGCCACCCCTCAGGTCCCCGGCCGCGTCGCACTTTATG
GGCACGATTCCCACCGAGCCCATCCGACACAGAAGCCTCACGCCGGCCGA
AGAGGACGAAGCCGCCGCCACCCGGGCTGCCGCCCACGCCGCAGCCACTG
CCCCCCCCTCCGCCCCTGTACCCTCCACTGCCGCCGCCACCACCGCCGCC
GCCGCAGCCGCTGCCGCCGGGGCGTCCACTTCCGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:775097..776181+

>mRNA_S-ischiensis_contig11.2056.1 ID=mRNA_S-ischiensis_contig11.2056.1|Name=mRNA_S-ischiensis_contig11.2056.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2166bp|location=Sequence derived from alignment at S-ischiensis_contig11:775097..776181+ (Schizocladia ischiensis KU_0333)
GTGGACAGGACCCGTGTCATTGCTGGGTACGATTTTGAGCCTCGTGCGGC
GGGGAACAGCCATGCCTCTTCGCTAAGCCACACTTCAGAACTCGAAGATG
GCGATGGTGGCGGCGGCGACGGCGGCGGCAGCGGTGACGACGACAACGAC
GATGACAATGACGCGAGGTCCACGGACCCAGTGGCACCACACACAAACAC
AGCTAGCCCGGGCCACGGCTGGACATGGGGCCAACCTGCTTCTGACGAAT
CACCAGGCACACCCGCCACGTCCGAGGGAGCCCCAGGCGTGGCGCAGGGG
CTGGGCGCCATGCCCTCCGGGGGCCACGCCGTACCAGCAGGCCACGAGCC
CCCTTCGGCTGGGGCCACCCAGCACCCGCCATCAAATGTAGGCTGGATCA
AGGACCTCGTCCAGGGGGGTTCGGCGGGCACCCCTGCCGCAGCTGACCGG
TCCGGCGCCCCGGCTACGGCTGGCCCCTCACCCCTGCCGGCGGGGGCCGC
TACCCTCACCCAGCCACAAAAGGAGGAGGCCCAGCCAGGGAACATCGACT
GGATCAAGAACCTCGTCCAGGGTGGTTCGGCTGCTGCCCCCCCCAAAGCA
GCCGACCGGCCCGGCGCTGCGCCTGCAGGCGGCCCCTCCCCCCCATCGGC
GGGGGTCGCTGCCCTGGCCCAACCCAAAAACGAGCAGGCCCTGCCAGGGA
ACATCGACTGGATCAAGAACCTCGTGCAGGGGGCAATCGCCGCAGAGGCA
ACTGCTCCCGCCGGCGCCACCTGGCCCTCCATCACCCCGGCCGGCGGCGT
GGCCGTGGTGGCATCGCCCTCACCGCTGGGGCCACCCGGCGCAGGGAGAT
TCTCTCCGCAGGCGCCACCCCTCAGGTCCCCGGCCGCGTCGCACTTTATG
GGCACGATTCCCACCGAGCCCATCCGACACAGAAGCCTCACGCCGGCCGA
AGAGGACGAAGCCGCCGCCACCCGGGCTGCCGCCCACGCCGCAGCCACTG
CCCCCCCCTCCGCCCCTGTACCCTCCACTGCCGCCGCCACCACCGCCGCC
GCCGCAGCCGCTGCCGCCGGGGCGTCCACTTCCGTGGACAGGACCCGTGT
CATTGCTGGGTACGATTTTGAGCCTCGTGCGGCGGGGAACAGCCATGCCT
CTTCGCTAAGCCACACTTCAGAACTCGAAGATGGCGATGGTGGCGGCGGC
GACGGCGGCGGCAGCGGTGACGACGACAACGACGATGACAATGACGCGAG
GTCCACGGACCCAGTGGCACCACACACAAACACAGCTAGCCCGGGCCACG
GCTGGACATGGGGCCAACCTGCTTCTGACGAATCACCAGGCACACCCGCC
ACGTCCGAGGGAGCCCCAGGCGTGGCGCAGGGGCTGGGCGCCATGCCCTC
CGGGGGCCACGCCGTACCAGCAGGCCACGAGCCCCCTTCGGCTGGGGCCA
CCCAGCACCCGCCATCAAATGTAGGCTGGATCAAGGACCTCGTCCAGGGG
GGTTCGGCGGGCACCCCTGCCGCAGCTGACCGGTCCGGCGCCCCGGCTAC
GGCTGGCCCCTCACCCCTGCCGGCGGGGGCCGCTACCCTCACCCAGCCAC
AAAAGGAGGAGGCCCAGCCAGGGAACATCGACTGGATCAAGAACCTCGTC
CAGGGTGGTTCGGCTGCTGCCCCCCCCAAAGCAGCCGACCGGCCCGGCGC
TGCGCCTGCAGGCGGCCCCTCCCCCCCATCGGCGGGGGTCGCTGCCCTGG
CCCAACCCAAAAACGAGCAGGCCCTGCCAGGGAACATCGACTGGATCAAG
AACCTCGTGCAGGGGGCAATCGCCGCAGAGGCAACTGCTCCCGCCGGCGC
CACCTGGCCCTCCATCACCCCGGCCGGCGGCGTGGCCGTGGTGGCATCGC
CCTCACCGCTGGGGCCACCCGGCGCAGGGAGATTCTCTCCGCAGGCGCCA
CCCCTCAGGTCCCCGGCCGCGTCGCACTTTATGGGCACGATTCCCACCGA
GCCCATCCGACACAGAAGCCTCACGCCGGCCGAAGAGGACGAAGCCGCCG
CCACCCGGGCTGCCGCCCACGCCGCAGCCACTGCCCCCCCCTCCGCCCCT
GTACCCTCCACTGCCGCCGCCACCACCGCCGCCGCCGCAGCCGCTGCCGC
CGGGGCGTCCACTTCC
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