mRNA_S-ischiensis_contig11.2055.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2055.1
Unique NamemRNA_S-ischiensis_contig11.2055.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Match: D7FWC4_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FWC4_ECTSI)

HSP 1 Score: 80.9 bits (198), Expect = 5.140e-15
Identity = 44/79 (55.70%), Postives = 50/79 (63.29%), Query Frame = 1
Query:  202 GTYAVGDVVEARFGARSKWFPGKIDAV--SPEG--LFTVQYDDGDCEDGVRPSSMRRPGQAEPVLRRGSPVDMKLTRKG 426
            G Y   D VEARFG RSKWFPGK+       EG  L+ V +DDGD E+GV    +RRPGQ  P LR G  VD+KL RKG
Sbjct:   47 GRYQPHDTVEARFGGRSKWFPGKVRRAYEGREGRLLYDVDFDDGDEEEGVLAGRVRRPGQGPPALRAGLVVDVKLARKG 125          
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Match: A0A6H5K1V4_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5K1V4_9PHAE)

HSP 1 Score: 77.8 bits (190), Expect = 6.140e-14
Identity = 46/90 (51.11%), Postives = 53/90 (58.89%), Query Frame = 1
Query:  172 HASELLMAAP-GTYAVGDVVEARFGARSKWFPGKIDAV--SPEG--LFTVQYDDGDCEDGVRPSSMRRPGQAEPVLRRGSPVDMKLTRKG 426
            H+SE       G Y   D VEARFG RSKWFPGK+       EG  L+ V +DDGD E+GV    +RRPGQ  P L  G  VD+KL RKG
Sbjct:   36 HSSETPKPQEDGRYRPQDAVEARFGGRSKWFPGKVRRAYEGREGRLLYDVDFDDGDEEEGVLAGRVRRPGQRPPSLSAGLVVDIKLARKG 125          
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Match: T0S0C4_SAPDV (Uncharacterized protein n=2 Tax=Saprolegnia diclina (strain VS20) TaxID=1156394 RepID=T0S0C4_SAPDV)

HSP 1 Score: 58.5 bits (140), Expect = 3.220e-7
Identity = 30/64 (46.88%), Postives = 43/64 (67.19%), Query Frame = 1
Query:  214 VGDVVEARFGARSKWFPGKIDAVSPEGLFTVQYDDGDCEDGVRPSSMRRPGQAEPVLRRGSPVD 405
            +GD+VEARFG + K+F GKI  V  +G + ++YDDGD E  V P+ +RR  Q  P L +G+ V+
Sbjct: 1098 MGDLVEARFGGKDKYFKGKITHVHSDGSYDIEYDDGDEERRVDPALVRRRDQ--PKLTKGAVVE 1159          
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Match: A0A7S2W821_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2W821_9STRA)

HSP 1 Score: 56.2 bits (134), Expect = 3.510e-7
Identity = 24/68 (35.29%), Postives = 39/68 (57.35%), Query Frame = 1
Query:  154 SGNPNGHASELLMAAPGTYAVGDVVEARFGARSKWFPGKIDAVSPEGLFTVQYDDGDCEDGVRPSSMR 357
            S  P G  +  +     ++  G  +EAR+G + KW+PG+I  V  +G+F + Y+DGD E GV   ++R
Sbjct:   37 SSTPKGKKTRAIKTK--SFRHGQKIEARYGGKGKWYPGRISNVHGDGMFDISYNDGDREKGVSEENIR 102          
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Match: A0A7S2RHP7_9STRA (Hypothetical protein (Fragment) n=1 Tax=labyrinthulid quahog parasite QPX TaxID=96639 RepID=A0A7S2RHP7_9STRA)

HSP 1 Score: 54.7 bits (130), Expect = 4.940e-7
Identity = 27/66 (40.91%), Postives = 37/66 (56.06%), Query Frame = 1
Query:  208 YAVGDVVEARFGARSKWFPGKIDAVSPEGLFTVQYDDGDCEDGVRPSSMRRPGQAEPVLRRGSPVD 405
            Y VG +VEA+F  +SKW+ G+I  V+ +G + + Y+DGD E  V  S MR      P   RG   D
Sbjct:   12 YEVGQMVEAKFRGKSKWYRGEITRVNRDGTYDILYEDGDSEQHVESSLMRSLDMQSPRGHRGGGKD 77          
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Match: A0A7S1XW54_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XW54_9STRA)

HSP 1 Score: 57.8 bits (138), Expect = 5.510e-7
Identity = 26/58 (44.83%), Postives = 39/58 (67.24%), Query Frame = 1
Query:  202 GTYAVGDVVEARFGARSKWFPGKIDAVSPEGLFTVQYDDGDCEDGVRPSSMRRPGQAE 375
            G  A+GD VEAR+  R K++PG + AV  +G + + YDDG+ E+GV  S +R+ G A+
Sbjct:    5 GALALGDKVEARYKGRGKYYPGSVAAVREDGGYDIAYDDGEREEGVAQSLIRKRGAAD 62          
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Match: A0A067CHD7_SAPPC (SGF29 C-terminal domain-containing protein n=1 Tax=Saprolegnia parasitica (strain CBS 223.65) TaxID=695850 RepID=A0A067CHD7_SAPPC)

HSP 1 Score: 57.4 bits (137), Expect = 7.280e-7
Identity = 31/71 (43.66%), Postives = 43/71 (60.56%), Query Frame = 1
Query:  217 GDVVEARFGARSKWFPGKIDAVSPEGLFTVQYDDGDCEDGVRPSSMRR-PGQAEPVLRRGSPVDMKLTRKG 426
            GD+VEARFG + K+F GKI  V  +G + ++YDDGD E  V P+ +R  P   E   ++G  VD +   KG
Sbjct:  393 GDLVEARFGGKDKFFKGKITHVHGDGSYDIEYDDGDEERRVDPALVRLLPTTKETKFKKGDVVDARFGGKG 463          
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Match: A0A7S0I695_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Phaeocystis antarctica TaxID=33657 RepID=A0A7S0I695_9EUKA)

HSP 1 Score: 54.7 bits (130), Expect = 2.380e-6
Identity = 26/61 (42.62%), Postives = 36/61 (59.02%), Query Frame = 1
Query:  196 APGTYAVGDVVEARFGARSKWFPGKIDAVSPEGLFTVQYDDGDCEDGV-----RPSSMRRP 363
            AP +  +G  VEARFG RS+WFPG +  ++ +G   + Y+DGD E  V     RPS  + P
Sbjct:  115 APTSLEIGQSVEARFGGRSRWFPGVVQHLNEDGTVAINYEDGDQEKKVLQKHVRPSKSKAP 175          
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Match: D7FUN9_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D7FUN9_ECTSI)

HSP 1 Score: 55.5 bits (132), Expect = 3.870e-6
Identity = 25/55 (45.45%), Postives = 35/55 (63.64%), Query Frame = 1
Query:  196 APGTYAVGDVVEARFGARSKWFPGKIDAVSPEGLFTVQYDDGDCEDGVRPSSMRR 360
            +PG  AVGD VEARF A S+WF   ++  + +G F++ YDDGD E  V    +R+
Sbjct: 1311 SPGGLAVGDKVEARFRAGSRWFKATVEGKNRDGTFSLSYDDGDFETAVERDHIRK 1365          
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Match: A0A7S2SVE7_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SVE7_9STRA)

HSP 1 Score: 55.1 bits (131), Expect = 4.060e-6
Identity = 29/70 (41.43%), Postives = 43/70 (61.43%), Query Frame = 1
Query:  181 ELLMAAPGTYAV--GDVVEARFGARSKWFPGKIDAVSPEGLFTVQYDDGDCEDGVRPSSMRRPGQAEPVL 384
            +  +A+P T+ V  GD VEAR+     +F G I  V  EGLF +QYDDG+ E  V P  +RR G+++ ++
Sbjct:  197 DAALASPATHGVKEGDRVEARWDGGPDFFSGVILKVHHEGLFNIQYDDGEMETKVPPHLIRRRGESQTLV 266          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2055.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D7FWC4_ECTSI5.140e-1555.70Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5K1V4_9PHAE6.140e-1451.11Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
T0S0C4_SAPDV3.220e-746.88Uncharacterized protein n=2 Tax=Saprolegnia diclin... [more]
A0A7S2W821_9STRA3.510e-735.29Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S2RHP7_9STRA4.940e-740.91Hypothetical protein (Fragment) n=1 Tax=labyrinthu... [more]
A0A7S1XW54_9STRA5.510e-744.83Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
A0A067CHD7_SAPPC7.280e-743.66SGF29 C-terminal domain-containing protein n=1 Tax... [more]
A0A7S0I695_9EUKA2.380e-642.62Hypothetical protein (Fragment) n=1 Tax=Phaeocysti... [more]
D7FUN9_ECTSI3.870e-645.45Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A7S2SVE7_9STRA4.060e-641.43Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:774584..775009 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score60.5
Seed ortholog evalue4.2e-07
Seed eggNOG ortholog112098.XP_008610819.1
EggNOG free text desc.Sterile alpha motif.
EggNOG OGs2EB7N@1,2SHC4@2759
COG Functional cat.S
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-25_000480.1
Exons1
Model size426
Cds size237
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.0138476-UTR-S-ischiensis_contig11:774583..7747721622815593.0138476-UTR-S-ischiensis_contig11:774583..774772Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 774584..774772 +
1695739790.9343553-UTR-S-ischiensis_contig11:774583..7747721695739790.9343553-UTR-S-ischiensis_contig11:774583..774772Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 774584..774772 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815593.0269623-CDS-S-ischiensis_contig11:774772..7750091622815593.0269623-CDS-S-ischiensis_contig11:774772..775009Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 774773..775009 +
1695739790.9456234-CDS-S-ischiensis_contig11:774772..7750091695739790.9456234-CDS-S-ischiensis_contig11:774772..775009Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 774773..775009 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2055.1prot_S-ischiensis_contig11.2055.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 774773..775009 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2055.1

>prot_S-ischiensis_contig11.2055.1 ID=prot_S-ischiensis_contig11.2055.1|Name=mRNA_S-ischiensis_contig11.2055.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=79bp
MAAPGTYAVGDVVEARFGARSKWFPGKIDAVSPEGLFTVQYDDGDCEDGV
RPSSMRRPGQAEPVLRRGSPVDMKLTRKG
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mRNA from alignment at S-ischiensis_contig11:774584..775009+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2055.1 ID=mRNA_S-ischiensis_contig11.2055.1|Name=mRNA_S-ischiensis_contig11.2055.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=426bp|location=Sequence derived from alignment at S-ischiensis_contig11:774584..775009+ (Schizocladia ischiensis KU_0333)
CTTTGTTTGAGAGGGGAGCTTGGCCGTAGGACTGCGTCGGACACGGGCCT GGGGGGTCCTGCGTAGTTCGGTTGTGGTGCATGGCAGTGAACTGCTATCT ACAGTTCGTCAGTGTGGTTGTCGGATAGGGAGATTGTGTGCTAGAGGAAG TATAGCGGCAACCCCAACGGCCACGCCTCCGAGCTGTTAATGGCCGCCCC CGGCACTTACGCTGTCGGAGATGTGGTGGAGGCTCGTTTTGGGGCGAGGT CCAAATGGTTTCCGGGGAAGATAGACGCAGTGAGTCCTGAGGGGTTGTTT ACCGTGCAGTACGATGACGGGGACTGCGAGGACGGCGTGAGGCCGTCCAG CATGCGAAGGCCCGGGCAGGCGGAGCCAGTACTGCGTCGAGGGTCACCAG TGGACATGAAACTGACGAGGAAGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:774584..775009+

>mRNA_S-ischiensis_contig11.2055.1 ID=mRNA_S-ischiensis_contig11.2055.1|Name=mRNA_S-ischiensis_contig11.2055.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=474bp|location=Sequence derived from alignment at S-ischiensis_contig11:774584..775009+ (Schizocladia ischiensis KU_0333)
ATGGCCGCCCCCGGCACTTACGCTGTCGGAGATGTGGTGGAGGCTCGTTT
TGGGGCGAGGTCCAAATGGTTTCCGGGGAAGATAGACGCAGTGAGTCCTG
AGGGGTTGTTTACCGTGCAGTACGATGACGGGGACTGCGAGGACGGCGTG
AGGCCGTCCAGCATGCGAAGGCCCGGGCAGGCGGAGCCAGTACTGCGTCG
AGGGTCACCAGTGGACATGAAACTGACGAGGAAGGGGATGGCCGCCCCCG
GCACTTACGCTGTCGGAGATGTGGTGGAGGCTCGTTTTGGGGCGAGGTCC
AAATGGTTTCCGGGGAAGATAGACGCAGTGAGTCCTGAGGGGTTGTTTAC
CGTGCAGTACGATGACGGGGACTGCGAGGACGGCGTGAGGCCGTCCAGCA
TGCGAAGGCCCGGGCAGGCGGAGCCAGTACTGCGTCGAGGGTCACCAGTG
GACATGAAACTGACGAGGAAGGGG
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