mRNA_S-ischiensis_contig11.2053.1 (mRNA) Schizocladia ischiensis KU_0333
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Overview
Homology
BLAST of mRNA_S-ischiensis_contig11.2053.1 vs. uniprot
Match: D7G5T0_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5T0_ECTSI) HSP 1 Score: 546 bits (1406), Expect = 5.730e-177 Identity = 322/793 (40.61%), Postives = 444/793 (55.99%), Query Frame = 2
Query: 98 RDKGQWYKWLHLGIWAVITYLTVLDRFYWNLWPRQTIGGFCQHKCGGDFIAGPGED--ILKPGPWGAKAFDALARVSARVIITTTSLMFITMSHCTWNRLSEVEAFKPYLYNWRNDNLWIHTVGGWTIVATTLAHVWSLFLPSIFNGYGNIIVGGSISWPLQVARPGPQINIETEEAVWGVDDVWRIFWMTVVLGFLLPYSRSGHALGKSYSLAMWLHLGGAAGFFLDSFRRRTHPHVWIVNFPFVLWYTADRIAAFTWYRADRGVPARRILLDDNYMLLLWRQSRTSQRICDVYWIKQMLGSKDRRTGEWGHPFTTCSAH------TVRLGDKSLHTMIELPFSTDVTWGGHRYRLHPGGATAGAGTGAGPNRA-------------------IAPVPLPPMSPVKRLANIVSEVDGHISPSTPVLGVEAMWGRGDDDE----SFFSIHVKQPCEHIYRNTFFIFVFFLPCEGKTGFVEPRFGMSLFPVSVARAQEQCSTHTRLRCALVASTVYRGSRQDTDVDSEIDLMDEASDPGAEMEAQIVR-LSNAAFERYCNFTLTEEEREEEQQEQGWDTMAIARIQRRPSPEAFRWSCLGTTCAVDCFRYPETARMADCEAELTALRGEVERVPLMTFGPYRSEYGRLLDLPNLPPVLVVGTGAGAGLVLDVMAHIRKHRPELNNSVSIFYSAASLALVQFVTDNLLAEQVPNVTVRTTLTRHEHLRYYEGEEVTPRHRG---SFKLGRFDMEAVLETVGDDTEVYFCGAGGINRVLREECAARGMKYVGSSVQ 2371
++ G Y+++ LG+W I+ VLDRFYWN+WPRQTI C CGGDF +D LK GPW AK FD +AR+SAR II+TT+LMFITM H TWN LSEV+ +P+LY WR DN W+H++GGWT+ T+ HV+SL LPSIF+G+ N+ VGG + PLQV+ ++++ + A WG DD+WRI WMT++ L P SRS AL K+++LAMWLH+G G+F D++RRRTHPHVWI+N P LWY AD++ T R D RI LD++YMLLLW + +RICD++W+K +D E HPFTTCS+H G ++ T IE+P T V W GHR+ L T PNR ++ +P++ A + S G S+ + V++ + + DE + + + + I V L +G + PR G +++ + ST + + +R D V E SD G +++R LS F Y EE R E + W MAI ++ RR S +A + SC+G T + FR PET+ +AD EA A R + L T+GPYRSEYGRL + P+LPP+L+V TGAGA LVLD + ++R + VS+ YS+ASLAL+QFVT+ LLAE+ P + ++T LTRHE L E+ G +GR D++ ++ V +TEVYFCG GGIN +LRE C RG+KYVGSSVQ
Sbjct: 110 KNYGGVYRYVGLGVWLFISTFMVLDRFYWNVWPRQTI---CTDGCGGDFFCEMDDDPGCLKDGPWSAKTFDVIARISARFIISTTNLMFITMCHGTWNYLSEVQVLRPFLYAWRTDNFWLHSIGGWTMGIWTMLHVYSLLLPSIFHGFKNVAVGGPVELPLQVSLAVSNVDLDNKLANWGYDDIWRIIWMTLIFCVLTPLSRSAWALKKNFTLAMWLHIGVGVGYFFDNWRRRTHPHVWILNTPVFLWYIADKVWCCTRGRVDDRAETTRISLDEDYMLLLWHEEHP-KRICDIFWLKH----RDSDGTEMAHPFTTCSSHDTPNKQATASGTAAVKTTIEVPTDTSVHWKGHRFLLASSSGRRSNATD--PNRRSVRSFFSGKSFGAQGSFGRVSSFRFGQSNPMRE-ARLASSHTG----SSQDVDVDSFFEEDEKDEPGETTMIGVDANPDIDEVS-----IMVGGLKPKGSRSYSLPRLG------TISGGVPEVSTTND-------GSGVKSARPDKPVKKET-----GSDVGGPNRREVIRRLSTKNFIEYRKAE-AEEGRLETVEAGSWSKMAIVKVNRRTS-KASKCSCMGLTFILSIFRDPETSSIADLEA---AQRNAP--LQLRTYGPYRSEYGRLAEFPHLPPLLIVATGAGAALVLDFIGYVRANNIVPLRPVSVCYSSASLALLQFVTNTLLAERSPGIHIQTALTRHEDL------EIVDSANGPEPELVMGRLDIKKIIGEVSQETEVYFCGGGGINALLRETCTRRGIKYVGSSVQ 851
BLAST of mRNA_S-ischiensis_contig11.2053.1 vs. uniprot
Match: D8LCP9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LCP9_ECTSI) HSP 1 Score: 452 bits (1162), Expect = 1.000e-143 Identity = 286/718 (39.83%), Postives = 389/718 (54.18%), Query Frame = 2
Query: 269 LKPGPWGAKAFDALARVSARVIITTTSLMFITMSHCTWNRLSEVEAFKPYLYNWRNDNLWIHTVGGWTIVATTLAHVWSLFLPSIFNGYGNIIVGGSISWPLQVARPGPQINIETEEAVWGVDDVWRIFWMTVVLGFLLPYSRSGHALGKSYSLAMWLHLGGAAGFFLDSFRRRTHPHVWIVNFPFVLWYTADRIAAFTWYRADRGVPARRILLDDNYMLLLWRQSRTSQRICDVYWIKQMLGSKDRRTGEWGHPFTTCSAHTV-----RLGDKS-LHTMIELPFSTDVTWGGHRYRLHPGGATAGAGTGAGPNRAIAPVPLPPMSPVKRLANIVSEVDGHISPSTPVLGVEAMWGRGDDD-ESFFSIHVKQPCEHIYRNTFFIFVFFLPCEGKT----GFVEPRFGMSL---FPVSVARAQEQCSTHTRLRCALVASTVYRGSRQDTDVDSEIDLMDEASDPGAEMEAQIVRLSNAAFERYCNFTLTEEEREEEQQEQGWDTMAIARIQRRPSPEAFRWSCLGTTCAVDCFRYPETARMADCEAELTALRGEVERVP---LMTFGPYRSEYGRLLDLPNLPPVLVVGTGAGAGLVLDVMAHIRKHRPELNNSVSIFYSAASLALVQFVTDNLLAEQVPNVTVRTTLTRHEHLRYYEGEEVTPRHRGSFKLGRFDMEAVLETVGDDTEVYFCGAGGINRVLREECAARGMKYVGSSVQ 2371
LK GPW AKAFDA+AR SAR II+TT+LMFITM H TWN LSEV+ +P+LY WR DN W+H++GGWT+ T+ HV+SL LPS+F+G+ N+ VGG + P QV+ ++++ + A WG DD+WRIFWMT++ L+P SRS AL K+++LAMWLH+G G+F D++RRRTHPHVWI+N P LWY AD++ W +R S E HPFTTCS+H L D + ++TMIE+P T V W GHR+ L GG R++ P + N+ S G LG G D D +S F K+ E T I V P + G ++P SL P ++ + + T + +R D V + A GA +A I RL+ AF+ Y E+ + Q W MAI ++ RR S +A + SC+G T + FR PET+ +AD EA +R P L T+GPYRSEYGRL++ P+LPP+L+V TGAGA LVLD + ++R + VS++YS+ASLAL+QFVT+ LLAE+ P + ++T LTRHE L+ + E P +GR D++ ++ V +TEVYFCG GGIN +LRE CA RG+KYVGSSVQ
Sbjct: 8 LKAGPWSAKAFDAIARASARFIISTTNLMFITMCHGTWNFLSEVQVLRPFLYAWRTDNFWLHSIGGWTMGIWTMLHVYSLLLPSLFHGFKNVAVGGPVELPFQVSLAVSNVDVDNKLANWGYDDIWRIFWMTLIFCVLIPLSRSAWALKKNFTLAMWLHMGVGIGYFFDNWRRRTHPHVWILNTPVFLWYIADKV---------------------------WCSTRGSDGT------------------EMAHPFTTCSSHDTPNKPATLSDTTAVNTMIEVPTDTSVHWKGHRFLLASGG-----------QRSVTTDP--------KHRNVPSFFSGRS------LGTHGSSGSKDIDVDSIFDDDEKEEPEE----TTMIGVDVRPDIDEVSVIVGGLKPTASRSLSLPLPGTIYGPETEVGTTND-------GNGFNPARPDKLVREKTG----ADVGGANRKAVIKRLNTTAFKEYRKAD-AEKGQLATIQAGSWSKMAIVKVNRRTS-KAKKCSCMGLTFILRIFRDPETSSIADLEA--------AQRNPTFELRTYGPYRSEYGRLVEFPHLPPLLIVATGAGAALVLDFIGYVRANNIVPLRPVSVYYSSASLALLQFVTNTLLAERSPGIHIQTALTRHEDLQIVD-EASGP--EPELVMGRLDIKNIIGEVSQETEVYFCGGGGINALLRETCARRGIKYVGSSVQ 627
BLAST of mRNA_S-ischiensis_contig11.2053.1 vs. uniprot
Match: D7G5S9_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S9_ECTSI) HSP 1 Score: 207 bits (527), Expect = 8.800e-58 Identity = 106/213 (49.77%), Postives = 142/213 (66.67%), Query Frame = 2
Query: 1736 MAIARIQRRPSPEA-FRWSCLGTTCAVDCFRYPETARMADCEAELTALRGEVERVPLMTFGPYRSEYGRLLDLPNLPPVLVVGTGAGAGLVLDVMAHIRKHRPELNNSVSIFYSAASLALVQFVTDNLLAEQVPNVTVRTTLTRHEHLRYYEGEEVTPRHRGSFKLGRFDMEAVLETVGDDTEVYFCGAGGINRVLREECAARGMKYVGSSVQ 2371
MAI R+ RR S + +C+G T ++ FR PETA +AD E ++E +PL +GPYRSEYGRL + PNLPP+L++ TGAGAGLVLD + +R + V + YS+ASLAL+QFVT+ LLAE+ P + V T LTRHE L + T + + +GR D+++++ V +DTEVYFCG GGIN +LRE CA RGMKYVGS+VQ
Sbjct: 1 MAIVRLNRRTSQSSPCACTCIGLTWVLNIFRTPETASIADVEET-----NDLETIPLRVYGPYRSEYGRLEEFPNLPPLLIIATGAGAGLVLDFVGFVRAKKITPKRPVKVCYSSASLALLQFVTNTLLAERTPGIQVETALTRHEELEMFN---TTNQPKPELVIGRLDVKSIIRGVSEDTEVYFCGGGGINTLLREACAKRGMKYVGSAVQ 205
BLAST of mRNA_S-ischiensis_contig11.2053.1 vs. uniprot
Match: D7G5S8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7G5S8_ECTSI) HSP 1 Score: 200 bits (508), Expect = 1.090e-52 Identity = 122/359 (33.98%), Postives = 160/359 (44.57%), Query Frame = 2
Query: 116 YKWLHLGIWAVITYLTVLDRFYWNLWPRQTIGGFCQHKCGGDFIAGPGEDILKPGPWGAKAFDALARVSARVIITTTSLMFITMSHCTWNRLSEVEAFKPYLYNWRNDNLWIHTVGGWTIVATTLAHVWSLFLPSIFNGYGNIIVGGSISWPLQVARPGPQINIETEEAVWGVDDVWRIFWMTVVLGFLLPYSRSGHALGKSYSLAMWLHLGGAAGFFLDSFRRRTHPHVWIVNFPFVLWYTADRIAAFTWYRADRGVPARRILLDDNYMLLLWRQSRTSQRICDVYWIKQM-LGSK-DRRTGEWGHPFTTCSAHTVRLGDKS----LHTM-------IELPFSTDVTWGGHRYRLHPG 1153
Y+++ LG+W I+ VLDRFYWN+WPRQ+I C CGGDF C + V ++++ + A WG DDVWR+ WMT++ L P SRS AL K++SLAMWLH+G G+F D++RRRTHPHVWI+N P VLWY AD+I T R + RI LD++YMLLLW + + ICD++W+K SK RRTGE HPFTTCS+H +G S + T+ IE+P TDV W GHR+ L G
Sbjct: 2 YRYVGLGVWLFISTFMVLDRFYWNVWPRQSI---CTDGCGGDFF------------------------------------------CDMD---------------------------------------------------------------DVGLMASNVDVQNKLANWGYDDVWRLIWMTLIFCVLTPLSRSVWALKKNFSLAMWLHIGVGMGYFFDNWRRRTHPHVWILNTPVVLWYIADKIWCCTEGRVNHRAETTRIKLDEDYMLLLWNEDQPKS-ICDIFWLKHSDRDSKGSRRTGEVAHPFTTCSSHDTAVGHTSPEAGISTVGSPGRPNIEVPLETDVNWKGHRFLLTSG 251
BLAST of mRNA_S-ischiensis_contig11.2053.1 vs. uniprot
Match: A0A2V3IFJ1_9FLOR (Uncharacterized protein n=1 Tax=Gracilariopsis chorda TaxID=448386 RepID=A0A2V3IFJ1_9FLOR) HSP 1 Score: 156 bits (395), Expect = 2.930e-36 Identity = 116/344 (33.72%), Postives = 164/344 (47.67%), Query Frame = 2
Query: 143 AVITYLTVLDRFYWNLWPRQ--TIGGFCQHKCGGDFIAGPGEDILKPGPWGAKAFDALARVSARVIITTTSLMFITMSHCTWNRLSEVEAFKPYLYNWRND---NLWIHTVGGWTIVATTLAHVWSLFLPSIFNGYGNIIVGGSISWPLQVARPGPQINIETEEAVWGV--DDVWRIFWMTVVLGFLLPYSRSGHALGKSYSLAMWLHLGGAAGFFLDSFRRRTHPHVWIVNFPFVLWYTADRIAAFTWYRADRGVPARRILLDDNYMLLLWRQSRTSQRICDVYWIKQMLGSKDRRTGEW-------------GHPFTTC-------SAHTVRLG--DKSLHT 1087
T L V+DRF WN+WPRQ TIG G DF G LKPGPW K +DA+AR+S R I +L+ TM + N ++E ++ ++ + N +H G I TL HVWS+ P I +G+ ++ GS W L P +I E G+ DDV+RI MT++L LLP S L + L + LH +F+D RR THPH WI+N PF + + D + W R + + R+ L +D YMLL + +T + + Y+++ + S R + G P+TTC S T RLG DK HT
Sbjct: 50 GTFTLLAVVDRFVWNVWPRQMYTIG---TGSAGSDFTDG-----LKPGPWAVKFYDAVARISGRYSIVALNLLLFTMMKTSMNFVAE-SWIARHVVDFTDSVEGNRRLHKWNGIAIAVWTLLHVWSILFPCIVHGWNAEVILGSFEWILSERGPKGFKDINNETKTMGLQGDDVFRIVEMTILLAILLPLSVRW--LHTRWHLGIHLHNIINVLYFIDIVRRHTHPHSWILNTPFFVAWIVDSVIGSYW-RRSKPLMHRQHLSED-YMLLFSDERKTLETVGPKYYLRLVRSSLLERAHVFTAFENRQGLNLCEGKPWTTCLLIRVYHSKRTPRLGRKDKVSHT 380
BLAST of mRNA_S-ischiensis_contig11.2053.1 vs. uniprot
Match: A0A7S0TH34_9EUKA (Hypothetical protein (Fragment) n=1 Tax=Elphidium margaritaceum TaxID=933848 RepID=A0A7S0TH34_9EUKA) HSP 1 Score: 120 bits (300), Expect = 4.800e-25 Identity = 95/350 (27.14%), Postives = 153/350 (43.71%), Query Frame = 2
Query: 116 YKWLHLGIWAVITYLTVLDRFYWNLWPRQTIGGFCQHKCGGDFIAGPGEDILKPGPWGAKAFDALARVSARVIITTTSLMFITMSHCTWNRLSEVEAFKPYLY--NWRNDNLWIHT-VGGWTIVATTLAHVWSLFLPSIFNGYGNIIVGGSISWPLQVARPGPQINIETEEAV-WGVDDVWRIFWMTVVLGFLLPYSRSGHALGKSYSLAMWLHLGGAAGFFLDSFRRRTHPHVWIVNFPFVLWYTADRIAAFTWYRADRGVPARRILLDDNYMLLLWR-QSRTSQ--RICDVYWIKQMLGSKDRRTGEWGHPFTTCSAHTVRLGDKSLHTMIELPFSTDVTWGGHRYRL 1144
++W+ + A T + V+DRF N+WP ++ PG I PG +G F +A +S+R+++ ++S +F+ WN E E YL + N IH VG W + + HVW + + +I V S P + G I + + G++DV+RI ++ L+PYS ++++ A + H GA + +D R +HPH W N PF+ W+ DR+ +YR R++ LDD Y +L R R Q I DV++I + + DR HPFT H + MI W GH++ +
Sbjct: 59 FQWIFI---AFFTLVAVIDRFTLNMWPL--------------WVDSPGPTI--PGNFGVTCFALIAWISSRMMLVSSSYIFLFQCRIFWNWFVEREWVHRYLKIGDIHQSNNSIHYYVGIWLVGVPVVLHVWVILFAAALP-QNDIYVYSSWMRPYDAVK-GKSIAFYADNLLSLGINDVYRIVSTSLTFFVLIPYSIIKFTRDRNWTFAQYCHYTGALIYTVDLVRMTSHPHCWFFNVPFIFWWICDRLYGIFFYRRCVANVVRKVRLDDEYTVLYLRIPERLHQLHMIGDVFYINVVDCAFDR-----AHPFTVFQNHARG------NAMINDEMHGVPDWSGHKFAV 376
BLAST of mRNA_S-ischiensis_contig11.2053.1 vs. uniprot
Match: A0A6H5JCC2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JCC2_9PHAE) HSP 1 Score: 112 bits (279), Expect = 2.720e-24 Identity = 80/238 (33.61%), Postives = 111/238 (46.64%), Query Frame = 2
Query: 1793 LGTTCAVDCFRYPETARMADCEAELTALRGEVERVP---LMTFGPYRSEYGRLLDLPNLPPVLV---VGTGAGAGLVLDVMAHIRKHRPELNNSVSIFYSAASLALVQFVTDNLLAEQVPNVTVRTTLTRHEHLRYYEGEEVTPRHRGSFKLGRFDM---------------------------------------EAVLETVGDDTEVYFCGAGGINRVLREECAARGMKYVGSSVQ 2371
+G T + FR P T+ + + EA +R P L TFGPYRSEYGRL++ P+LPP+L AG G +++S+ASLAL+QFVT+ LLAE+ P + ++T LTRHE ++ G+ P +G D+ + ++ V +TEVYFCG GG+N L E CA RG+KYVG SVQ
Sbjct: 1 MGLTFILSIFRDPVTSSIPELEA--------AQRNPTFQLRTFGPYRSEYGRLVEFPHLPPLLGQQHCAIAAGFG---------------------VYHSSASLALLQFVTNTLLAERSPGIHIQTALTRHEDVQIV-GDTSGP--EPELVMGHLDIKHDTTDSNSLFAGYVRRYDKFVNPRWRALPLVFACLVLPQTIIGEVSQETEVYFCGGGGVNAPLCETCARRGIKYVGRSVQ 206 The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2053.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90) Total hits: 7
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig11.2053.1 >prot_S-ischiensis_contig11.2053.1 ID=prot_S-ischiensis_contig11.2053.1|Name=mRNA_S-ischiensis_contig11.2053.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=674bp MFITMSHCTWNRLSEVEAFKPYLYNWRNDNLWIHTVGGWTIVATTLAHVWback to top mRNA from alignment at S-ischiensis_contig11:750211..761770+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below.>mRNA_S-ischiensis_contig11.2053.1 ID=mRNA_S-ischiensis_contig11.2053.1|Name=mRNA_S-ischiensis_contig11.2053.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=11560bp|location=Sequence derived from alignment at S-ischiensis_contig11:750211..761770+ (Schizocladia ischiensis KU_0333)back to top Coding sequence (CDS) from alignment at S-ischiensis_contig11:750211..761770+ >mRNA_S-ischiensis_contig11.2053.1 ID=mRNA_S-ischiensis_contig11.2053.1|Name=mRNA_S-ischiensis_contig11.2053.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=4044bp|location=Sequence derived from alignment at S-ischiensis_contig11:750211..761770+ (Schizocladia ischiensis KU_0333)back to top |