mRNA_S-ischiensis_contig11.2049.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2049.1
Unique NamemRNA_S-ischiensis_contig11.2049.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2049.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:703512..704251 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorysignal peptide
Exons2
Model size565
Cds size408
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2049.1prot_S-ischiensis_contig11.2049.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 703582..704164 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.9002662-UTR-S-ischiensis_contig11:703511..7035811622815576.9002662-UTR-S-ischiensis_contig11:703511..703581Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 703512..703581 +
1695739781.1321106-UTR-S-ischiensis_contig11:703511..7035811695739781.1321106-UTR-S-ischiensis_contig11:703511..703581Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 703512..703581 +
1622815576.9452713-UTR-S-ischiensis_contig11:704164..7042511622815576.9452713-UTR-S-ischiensis_contig11:704164..704251Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 704165..704251 +
1695739781.1918197-UTR-S-ischiensis_contig11:704164..7042511695739781.1918197-UTR-S-ischiensis_contig11:704164..704251Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 704165..704251 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.9145684-CDS-S-ischiensis_contig11:703581..7037051622815576.9145684-CDS-S-ischiensis_contig11:703581..703705Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 703582..703705 +
1695739781.1406288-CDS-S-ischiensis_contig11:703581..7037051695739781.1406288-CDS-S-ischiensis_contig11:703581..703705Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 703582..703705 +
1622815576.9312673-CDS-S-ischiensis_contig11:703880..7041641622815576.9312673-CDS-S-ischiensis_contig11:703880..704164Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 703881..704164 +
1695739781.1800525-CDS-S-ischiensis_contig11:703880..7041641695739781.1800525-CDS-S-ischiensis_contig11:703880..704164Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 703881..704164 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2049.1

>prot_S-ischiensis_contig11.2049.1 ID=prot_S-ischiensis_contig11.2049.1|Name=mRNA_S-ischiensis_contig11.2049.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=136bp
MTSFTSWSRPLWIPLASTPLAHASAVMARSTSSAAPCLDCSATTTTIPKH
PHGARRRVSGRSHHGHQTLRDLWQLGERHHSPGGGPKFGHGRDHVGRRPN
TDGSFLCFLERSKCVFLCSVCVVPVMLVGLWPGWL*
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mRNA from alignment at S-ischiensis_contig11:703512..704251+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2049.1 ID=mRNA_S-ischiensis_contig11.2049.1|Name=mRNA_S-ischiensis_contig11.2049.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=740bp|location=Sequence derived from alignment at S-ischiensis_contig11:703512..704251+ (Schizocladia ischiensis KU_0333)
AACTCCGGCGGGGGCCGGCGTCTTCCTATAGCCCCCTTCTGCGAGTGCAT
GGAGCCCTCCCCGAACGAACATGACGAGCTTCACGAGCTGGTCCAGGCCT
TTGTGGATTCCGTTGGCATCAACACCGTTGGCACATGCAAGTGCCGTTAT
GGCCAGGTCGACAAGTTCGGCGGCTCCTTGCCTGGACTGTTCTGGTGAGC
TGCGCGTCGGCCGGGCAGGCGGGGCATAGCAATTGTTGCTTGCAAGGCGA
CAGCATAACGATGGCACTTGAGCGTGTCCGGACTGGGCATACCGACGGCC
GCTGTGAACTCATTCGTCACCCCTCCCGCCTCTTTTGTCATACACCCGCT
CCCTGCTGTTTCCAAGCAGCGACGACGACGACCATTCCTAAGCATCCCCA
TGGGGCGAGAAGAAGAGTGTCGGGGCGCAGCCACCACGGACATCAAACCC
TTCGGGATCTGTGGCAGCTTGGGGAACGTCATCACAGCCCGGGCGGCGGG
CCAAAGTTTGGTCATGGTCGAGATCATGTGGGGAGGAGGCCCAACACAGA
TGGCTCGTTCCTCTGTTTCCTTGAGCGGAGCAAGTGTGTGTTTTTGTGTT
CTGTATGTGTGGTGCCGGTGATGCTGGTTGGCCTTTGGCCCGGCTGGCTG
TAGTGTTTCTTTGTGCCTGTGCGCCCTACCATTCTGCGGTGTCGGGCACG
GATCTCTTTGAGTTGCCCACAACTCAGCGCCTTGCCCCCA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:703512..704251+

>mRNA_S-ischiensis_contig11.2049.1 ID=mRNA_S-ischiensis_contig11.2049.1|Name=mRNA_S-ischiensis_contig11.2049.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=816bp|location=Sequence derived from alignment at S-ischiensis_contig11:703512..704251+ (Schizocladia ischiensis KU_0333)
ATGACGAGCTTCACGAGCTGGTCCAGGCCTTTGTGGATTCCGTTGGCATC
AACACCGTTGGCACATGCAAGTGCCGTTATGGCCAGGTCGACAAGTTCGG
CGGCTCCTTGCCTGGACTGTTCTGATGACGAGCTTCACGAGCTGGTCCAG
GCCTTTGTGGATTCCGTTGGCATCAACACCGTTGGCACATGCAAGTGCCG
TTATGGCCAGGTCGACAAGTTCGGCGGCTCCTTGCCTGGACTGTTCTGCG
ACGACGACGACCATTCCTAAGCATCCCCATGGGGCGAGAAGAAGAGTGTC
GGGGCGCAGCCACCACGGACATCAAACCCTTCGGGATCTGTGGCAGCTTG
GGGAACGTCATCACAGCCCGGGCGGCGGGCCAAAGTTTGGTCATGGTCGA
GATCATGTGGGGAGGAGGCCCAACACAGATGGCTCGTTCCTCTGTTTCCT
TGAGCGGAGCAAGTGTGTGTTTTTGTGTTCTGTATGTGTGGTGCCGGTGA
TGCTGGTTGGCCTTTGGCCCGGCTGGCTGTAGCGACGACGACGACCATTC
CTAAGCATCCCCATGGGGCGAGAAGAAGAGTGTCGGGGCGCAGCCACCAC
GGACATCAAACCCTTCGGGATCTGTGGCAGCTTGGGGAACGTCATCACAG
CCCGGGCGGCGGGCCAAAGTTTGGTCATGGTCGAGATCATGTGGGGAGGA
GGCCCAACACAGATGGCTCGTTCCTCTGTTTCCTTGAGCGGAGCAAGTGT
GTGTTTTTGTGTTCTGTATGTGTGGTGCCGGTGATGCTGGTTGGCCTTTG
GCCCGGCTGGCTGTAG
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