mRNA_S-ischiensis_contig11.2033.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2033.1
Unique NamemRNA_S-ischiensis_contig11.2033.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.2033.1 vs. uniprot
Match: D7FYJ8_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FYJ8_ECTSI)

HSP 1 Score: 118 bits (295), Expect = 5.250e-28
Identity = 64/140 (45.71%), Postives = 79/140 (56.43%), Query Frame = 1 
Query:    7 HGPPPDVVRVCVRTLGLADKANGLFRFPPFRTEWLPRLLECALDALTTGSHPLLQEELGGLVFSLAKVDHAAFVDAFLPPFVASRLPPXXXXXXXXXXXXXTAARAEVLLSPWRAGQHLDAPSFAAALRGFVGDLSYLRA 426
            H  PPD+VR  +  L  + +  GLFRFPPF   WL  LL  AL  L  G+HPL QEE+  LVF LA+VDH AF   FLP F+ +                  A + E LL+PWRAG HLD P+F++ L   V DLS+ RA
Sbjct:   40 HSVPPDLVRRGLSVLEASHRTGGLFRFPPFAATWLQPLLTDALRGLAEGAHPLTQEEVHRLVFDLAEVDHRAFATEFLPHFLGTHY------------SWLGAEQKEALLAPWRAGTHLDVPTFSSFLEALVSDLSFFRA 167
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BLAST of mRNA_S-ischiensis_contig11.2033.1 vs. uniprot
Match: A0A6H5KJI2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5KJI2_9PHAE)

HSP 1 Score: 115 bits (287), Expect = 4.710e-24
Identity = 63/140 (45.00%), Postives = 78/140 (55.71%), Query Frame = 1 
Query:    7 HGPPPDVVRVCVRTLGLADKANGLFRFPPFRTEWLPRLLECALDALTTGSHPLLQEELGGLVFSLAKVDHAAFVDAFLPPFVASRLPPXXXXXXXXXXXXXTAARAEVLLSPWRAGQHLDAPSFAAALRGFVGDLSYLRA 426
            H  PPD+VR  +  L  + +  GLFRFPPF   WL  LL  AL  L  G+HPL  EE+  LVF LA+VDH AF   FLP F+ +                  A + E LL+PWRAG HLD P+F++ L   V DLS+ RA
Sbjct:  514 HSVPPDLVRRGLSVLEASHRTGGLFRFPPFAATWLQPLLTDALWGLAEGAHPLTHEEVHRLVFDLAEVDHRAFATEFLPHFLGTHY------------SWLGAEQKEALLAPWRAGTHLDMPTFSSFLEALVSDLSFFRA 641
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2033.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 2
Match NameE-valueIdentityDescription
D7FYJ8_ECTSI5.250e-2845.71Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A6H5KJI2_9PHAE4.710e-2445.00Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:571919..575474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.9
Seed ortholog evalue7.1e-08
Seed eggNOG ortholog36331.EPrPI00000019862
EggNOG free text desc.Exportin-6. Source PGD
EggNOG OGs1MF9W@121069,COG5101@1,KOG2020@2759
Ec32 ortholog descriptionconserved unknown protein
Ec32 orthologEc-02_004280.1
COG Functional cat.UY
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Exons3
Model size1235
Cds size447
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2033.1prot_S-ischiensis_contig11.2033.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 572705..575474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.171684-UTR-S-ischiensis_contig11:571918..5727041622815591.171684-UTR-S-ischiensis_contig11:571918..572704Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 571919..572704 -
1695739789.63072-UTR-S-ischiensis_contig11:571918..5727041695739789.63072-UTR-S-ischiensis_contig11:571918..572704Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 571919..572704 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815591.1884685-CDS-S-ischiensis_contig11:572704..5729441622815591.1884685-CDS-S-ischiensis_contig11:572704..572944Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 572705..572944 -
1695739789.6416166-CDS-S-ischiensis_contig11:572704..5729441695739789.6416166-CDS-S-ischiensis_contig11:572704..572944Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 572705..572944 -
1622815591.2048478-CDS-S-ischiensis_contig11:573569..5736931622815591.2048478-CDS-S-ischiensis_contig11:573569..573693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 573570..573693 -
1695739789.6512074-CDS-S-ischiensis_contig11:573569..5736931695739789.6512074-CDS-S-ischiensis_contig11:573569..573693Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 573570..573693 -
1622815591.2253194-CDS-S-ischiensis_contig11:575391..5754741622815591.2253194-CDS-S-ischiensis_contig11:575391..575474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 575392..575474 -
1695739789.659877-CDS-S-ischiensis_contig11:575391..5754741695739789.659877-CDS-S-ischiensis_contig11:575391..575474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 575392..575474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2033.1

>prot_S-ischiensis_contig11.2033.1 ID=prot_S-ischiensis_contig11.2033.1|Name=mRNA_S-ischiensis_contig11.2033.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=149bp
PRHGPPPDVVRVCVRTLGLADKANGLFRFPPFRTEWLPRLLECALDALTT
GSHPLLQEELGGLVFSLAKVDHAAFVDAFLPPFVASRLPPPPPTPAPGAA
AASTAARAEVLLSPWRAGQHLDAPSFAAALRGFVGDLSYLRAARAAAG*
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mRNA from alignment at S-ischiensis_contig11:571919..575474-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2033.1 ID=mRNA_S-ischiensis_contig11.2033.1|Name=mRNA_S-ischiensis_contig11.2033.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3556bp|location=Sequence derived from alignment at S-ischiensis_contig11:571919..575474- (Schizocladia ischiensis KU_0333)
CCGCGGCACGGCCCCCCCCCGGATGTGGTGAGGGTGTGTGTAAGGACGCT
GGGCCTGGCGGACAAGGCCAACGGGCTCTTCAGGTGGGTGCACAAGGTTT
GCATTAGGGCTTTTGTTGCGAGCGAAGGACTGCAGACATGTGCTGTAGAT
GTACGAGTACGATTTTGTTGCGAGCGAATGACTGCAGACATGTGCTGTAG
ATATGCGAGTACTCGCGTAGAAGCAGAAGTCCCTGCTTTGATGCATGTGG
GAGTGTGTCGCGTGTTGGCCTGGGACGGCCTTGGGGGATTGGCTCTGGGC
TGTACATACGTACGTGCTTCCAAGTTCGTGCTACTACTGGTACAGTACGA
GTACAGGTCATACAAGTGGTACAGTAGCTACATACTTCCGTATGTGCTGA
GGTCCCATACTCGTGCGTGCCACAAGCACCTTGGTGACGGGCATCATTGT
CATGGGGTTGTGTCACGCTGCTGCCGCCGCTGCTGCTGCTGCTGCTGCTG
CTGCGTGCACGCACCTCCATGTACTGTGTGGGCATGTGCAGCACTCCGTC
CAGAATGCTACTTACTATTGTGTTGTTGGCGCGAGTAGCGGCACGTGCAA
TCATGTCCCATAGGCCCATTTGCCCGGTTCAGCACTTGTTTTCCCCACTA
CTGTAGGTGCTTGGAAGTGCCCCAGTACTTGGAGCCACTGAAGTTCTTGC
CTGTATAGTACAGTAGAACTTCGAAGGTGTCCCACTGCTAGATAGGGTTT
GTTTGGAATTGCCAGTACTTGCTTTGGTACTGAAGTACGAGTGTAGCACT
ACATAGTGCAGCACAAGTACTCGTAGTACTGTAGCGAAATCTGTGGTGCA
CAGTAGTGTAGGGCAGGCAGTTACTCTTTTTTTTCTCTACCTGTGTGTAT
TTGTGCTCTACTCCAATACAGCACTGCCCGCTGTCGTAGACATGACATAC
TGTATATACCAGTACCTACAGTACTTCCCCTGTTCGGAAAGTCTGTTTGG
ACTTCTTCTTCACTCTATTGCGCACGGCTGGGGGCCTGTTGGGCAGGTAT
CTCACGAGAACAATGAGAGTTGGGATGGCCCTCTTTCCGACGGTATTGAT
GGGTGCTCGCCGGCAAGTGGCTACCCGTGCTTTGGCCTGGTCAAGGAGGT
AAAACATAACATGCTCCGTCCCAGCCTGCAGTAGTGGGGACACGAAGCTC
GATCGATGGCCAAAGTGCTACCACTGTGTGCAGTGTATAGAGGAGACTAT
GTACGTGAATCGCAAGGACGTACTGTGACTACATAGTCTGCACAGTGTGT
ACTTTTTCGAAACAGTAGAATTGGTGGTAGTGGTACGTGTCAGAACATGG
GTATCCATGATGTCATTACGACACTCATGGCTTATTGTCCCGTGTACAAG
ACTCTACAGCCCCTTGTGGTCCTCTCAGACTACTAGTAGGAGATATCTCT
GCAGTAGCTCCTCTCGCTGCACCTTAGGCATTTCTGCCATAGTCAGCACA
TGCCACCTGGCCTCACTGCCCTCTCTAGCGGCGCTAATAAACAAGGTCTA
CAGCGTTGCCATGAGACGACGTACTTCAACAGGTTATGAGCCCTGAGCTA
TACGTGGTGCATCCAGGGGAACATTGTATATGAGACGCCAATCGCCCCTG
ATGTCGAGGGAATGTGTCAGAACATCGGTATCCACCCAACCCTAGGTTCA
GTGCTTGAGTGCCACCTGCCCTGCTGCCGCGGACGCCCGTGCTGGCACCG
CCTGCGTCACTGTTGCATTGCGTTGGAATAGGTTCCCCCCCTTCCGGACG
GAGTGGCTTCCACGTCTTCTGGAATGTGCTTTGGACGCCTTGACCACGGG
CTCGCACCCCCTCCTGCAGGAGGAGCTTGGGGGTCTGGTGTTCAGCCTGG
CCAAGGTAAGTGCATGTGTGTACTCACGTTGGGACGAGATTTCTCGTCTC
TGCGCATGCCCTGGACCCGAACGATCCTCGTCTTGCTCTTTATCGTGGAT
CGCTGGCCAGCTGTACAGCAGCTTTCGCCCCACACGTCCTATGGGACAGA
GCGCGCCGGGTAGTTCACCGACAGAAATGTACTTGGAAGTACTCAAGTAT
GTGCTTCCTCGGGTGCTGTAGAGCTCCACTGTACAGTTGTACGATTACGT
GACAATGAAACCAAATTCTGGCTTCACCGGAGTGGCTTCCAGTGCACGCT
AACAGCACTACTTGGACGTACGTACTTGTGCACGAACAGTGCTGAGTATC
GACGTGTGCTACTGTATGAGTATAGACTAGTATCACCATACCTGGGAACT
TGAATCCGTGGCACCTACCATGAGACTCCGAGCCGCTTCAAGTCACTTGG
TGCAGCACATGCACGTATATCGTTCGGAGTATTCCTACTTACTTGATCCA
GCCGGCCTCACTCGGCCTAGCCGGCGGTATATCGACAAATACATACTTAT
ACAACACACCGCAGACCTCCTCTGAGACTCCGAACCACTCCCACCCCCAC
GCCCCCGCAAATCCCAACGAACACCCACAGGTGGACCACGCCGCCTTCGT
AGACGCCTTCCTACCGCCCTTTGTGGCCTCGCGCCTCCCCCCACCGCCGC
CGACGCCGGCGCCGGGCGCCGCCGCCGCCTCCACGGCCGCACGGGCGGAG
GTGCTGCTCTCTCCGTGGAGGGCGGGCCAGCACCTGGACGCGCCCTCCTT
TGCGGCGGCGCTGCGAGGTTTTGTCGGGGACCTTTCCTACCTTCGTGCAG
CCAGAGCCGCGGCGGGATAGAGTAGACCTCTATATCTGTACGAGTACTTG
CCAGTGCTGGCCCGGGTTTCTTCTCGGGGAGCCCCTGGAGGCATAGATTG
CTGAGGGGGGCGAGGAGAAGATTTGCTGTGGTTCCGGGCCTGATGGTGAT
GGCATTGACAGGACGGTGATGGCATGACAGGGCGTTGTACTCTCCTCTGC
AGTTTTTGAGCTCTTACGGTGTGCTACGGTAGTTGCACGGGGGTGCTCTA
CTTCCAAGGGTCATCTCTGTTGCTTGTGCTTTGAAGTGCTTCGAAGTACC
TAGTGGCTAAACTGCTTTCCAGTGTTCGCTGCTGAGGTACTTCGAAGTAT
TAGCAGGAACAACGCGTTCGGCAGCCATGTAGGTACTTCGAAGTACGTGA
TACTTAGATCAACCACCCGCCGGCGAGATTCATGCGGACCACGGCACTGT
TGATTGCTCTTCGAGTGCAGGCCTTTCCTTGGCTTGTAAAAGCAGTAAGC
TTACAGCAGGGAGAGGAGGAGCATGTGCAATGCCGCACAATTGGCACTTG
AGGATGAGAAGATGCGACAGCGCCCCAAAAACAAGCAAGATCCCATGCAC
AACTGACCCAGTGAATGTGGCGTTTCTCGTGAACGACCAAGCGTTAGAGG
GCATGGTTGGGCTTCAATGCAAGCTCAGGAGCCGCCCGTGGCTAGGACAC
ATGGTTCCAGACGCACAAGACCCACCGTGGCCCCCAGAACCACTCCCAAA
AATAAAAATAATAAATAAAAAAGGCCTGACCGACCGACACGGTGGCCACA
TCAGTG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:571919..575474-

>mRNA_S-ischiensis_contig11.2033.1 ID=mRNA_S-ischiensis_contig11.2033.1|Name=mRNA_S-ischiensis_contig11.2033.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=894bp|location=Sequence derived from alignment at S-ischiensis_contig11:571919..575474- (Schizocladia ischiensis KU_0333)
CCGCGGCACGGCCCCCCCCCGGATGTGGTGAGGGTGTGTGTAAGGACGCT
GGGCCTGGCGGACAAGGCCAACGGGCTCTTCAGCCGCGGCACGGCCCCCC
CCCGGATGTGGTGAGGGTGTGTGTAAGGACGCTGGGCCTGGCGGACAAGG
CCAACGGGCTCTTCAGGTTCCCCCCCTTCCGGACGGAGTGGCTTCCACGT
CTTCTGGAATGTGCTTTGGACGCCTTGACCACGGGCTCGCACCCCCTCCT
GCAGGAGGAGCTTGGGGGTCTGGTGTTCAGCCTGGCCAAGGTTCCCCCCC
TTCCGGACGGAGTGGCTTCCACGTCTTCTGGAATGTGCTTTGGACGCCTT
GACCACGGGCTCGCACCCCCTCCTGCAGGAGGAGCTTGGGGGTCTGGTGT
TCAGCCTGGCCAAGGTGGACCACGCCGCCTTCGTAGACGCCTTCCTACCG
CCCTTTGTGGCCTCGCGCCTCCCCCCACCGCCGCCGACGCCGGCGCCGGG
CGCCGCCGCCGCCTCCACGGCCGCACGGGCGGAGGTGCTGCTCTCTCCGT
GGAGGGCGGGCCAGCACCTGGACGCGCCCTCCTTTGCGGCGGCGCTGCGA
GGTTTTGTCGGGGACCTTTCCTACCTTCGTGCAGCCAGAGCCGCGGCGGG
ATAGGTGGACCACGCCGCCTTCGTAGACGCCTTCCTACCGCCCTTTGTGG
CCTCGCGCCTCCCCCCACCGCCGCCGACGCCGGCGCCGGGCGCCGCCGCC
GCCTCCACGGCCGCACGGGCGGAGGTGCTGCTCTCTCCGTGGAGGGCGGG
CCAGCACCTGGACGCGCCCTCCTTTGCGGCGGCGCTGCGAGGTTTTGTCG
GGGACCTTTCCTACCTTCGTGCAGCCAGAGCCGCGGCGGGATAG
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