mRNA_S-ischiensis_contig11.2016.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2016.1
Unique NamemRNA_S-ischiensis_contig11.2016.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Match: D8LHY2_ECTSI (Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2879 RepID=D8LHY2_ECTSI)

HSP 1 Score: 193 bits (491), Expect = 2.040e-53
Identity = 124/238 (52.10%), Postives = 159/238 (66.81%), Query Frame = 1
Query:  211 PRLEPVPESQIDDVFVLREEDDN---KVIEVYADRFAWVNGKRYIIGHPCDWVVSVGVPRGKGGLEDVSVNSLLMDEIFPTLQGALEQEDIHVFRTAVTLTLQGEFLEDGEEYDEXXXXXXXX-----LEGSQ-------GEVDLEYEVLSEGDGDXXXXXXXXXE--RVPTDIDAVGVELIASFWHEDTEYSLVKHIEPLILIAREEGKGAEREYYLLGEKESQEVSGIVEGLVTRE 873
            PRLE VPE ++D  +V R+E      +VIE YADRFA V G+RY+IGHPCDW VSV  P+ +G +E V ++S LM+E+ P LQ  LE ED+H+F T +TLTLQG+FL+D      XXXXXXXX     +E S        G+ ++EYEVL EGDG       XXXE  RVPTDI A GVELIAS+W+ED EY+LVKH++P+ +IAR+   G    YYLLGE+E+  V   VE ++  E
Sbjct:  122 PRLETVPEDKLDQAYVFRQERPGQTPRVIECYADRFAVVGGRRYMIGHPCDWAVSVCTPKDEGNVEAVPLDSELMEELLPGLQRELEAEDVHLFVTPITLTLQGDFLDDDXXXXXXXXXXXXXXXXXXMEYSSNKGTAFIGDEEIEYEVLEEGDGSYPTEEEXXXEDVRVPTDITAEGVELIASYWYEDKEYALVKHLDPVFVIARQTKNG----YYLLGEEEAAAVKPKVEAMLLEE 355          
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Match: A0A835YQ15_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835YQ15_9STRA)

HSP 1 Score: 181 bits (460), Expect = 2.510e-51
Identity = 99/213 (46.48%), Postives = 137/213 (64.32%), Query Frame = 1
Query:  268 EDDNKVIEVYADRFAWVNGKRYIIGHPCDWVVSVGVPRGKGGLEDVSVNSLLMDEIFPTLQGALEQEDIHVFRTAVTLTLQGEFLEDGEEYDEXXXXXXXXLEGSQGEVD-----------LEYEVLSEGDGDXXXXXXXXXERVPTDIDAVGVELIASFWHEDTEYSLVKHIEPLILIAREEGKGAEREYYLLGEKESQEVSGIVEGLVTRE 873
            ++  +V+E Y D FA VNG++Y++GHPCDW VS+G P  +G LE + +   LMDE+F TLQ  LE++D+H+FRT VTLTLQGEFLEDG E DE         E   GE D           L+++++ EGDG          E  PTDIDA  VELIASFWHE  EYSLV+H++P++L+A+   +G  R Y L+ E E+ +V+ ++E L+ +E
Sbjct:    3 QETGRVVECYPDVFAVVNGQKYLVGHPCDWCVSIGKPDAEGNLEPIPLEGELMDEVFSTLQTMLEEDDVHLFRTPVTLTLQGEFLEDGYEGDE---------EDDLGEDDYXXXXXXXNDGLQFDIIEEGDGQDPGDFEEE-ELEPTDIDADNVELIASFWHEGAEYSLVRHLDPILLVAKPSQEGDGR-YALVSEAEAADVNPVLERLLEKE 204          
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Match: A0A7S2V6D6_9STRA (Hypothetical protein n=1 Tax=Fibrocapsa japonica TaxID=94617 RepID=A0A7S2V6D6_9STRA)

HSP 1 Score: 126 bits (317), Expect = 1.520e-29
Identity = 84/226 (37.17%), Postives = 137/226 (60.62%), Query Frame = 1
Query:  214 RLEPVPESQIDDVFVLREEDDNKVIEVYADRFAWVNGKRYIIGHPCDWVVSVGVPRGKGGLEDVSVNSLLMDEIFPTLQGALEQEDIHVFRTAVTLTLQGEFLEDGEEYDEXXXXXXXXLEGSQGEVDLEYEV------LSEGDGDXXXXXXXXXERVPT-DIDAVGVEL--IASFWHEDTEYSLVKHIEPLILIAREEGKGAEREYYLLGEKESQEVSGIVEGLV 864
            R+E + E + +++ +L+E +  + IE Y +  A+V+ + YII +PCDW V++      G LE V ++S LMDE+FP L+  LEQ+DIH+FRT VTLTLQGEF+++ +   E  XXXXXX       V  E E+      + E   +         E  PT D+  +  E+  IA+FW++D EYSL+K ++P++++A+ +       Y+LL E+E+ +V+ ++E L+
Sbjct:   59 RIEDISEKKRNEIVILQEPETQRCIEAYINVKAFVDDQEYIIAYPCDWAVAMAAENEAGDLELVELDSPLMDELFPFLEQHLEQDDIHLFRTPVTLTLQGEFMDEVDAEMEEDXXXXXXXXXXXXXVMSEEELKKLGVEVIERPAEKVDVEEEIIENEPTHDLAKMEQEVDHIATFWYKDVEYSLMKMVDPVLMVAKPDKVNR---YFLLSEEEASKVNPLLEKLM 281          
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Match: A0A7S2QZU2_9STRA (Hypothetical protein n=1 Tax=Eucampia antarctica TaxID=49252 RepID=A0A7S2QZU2_9STRA)

HSP 1 Score: 77.8 bits (190), Expect = 1.730e-12
Identity = 73/218 (33.49%), Postives = 111/218 (50.92%), Query Frame = 1
Query:  217 LEPVPESQIDDVFVLREEDDNKVIEVYADRFAWVNGKRYIIGHPCDWVVSVGVPRGKGGLEDVSVNSLLMDEIFPTLQGALEQE---DIHVFRTAVTLTLQGEFLEDGEEYDEXXXXXXXXLEGSQGEVDLEYEVLSEGDGDXXXXXXXXXERVPTDIDAVGVELIASFWHEDTEYSLVKHIEPLILIAREEGKGAEREYYLLGEKESQEVSGIVEGL 861
            LE +PE   D      + D N+ IE YAD  A VNG  Y +G PCD+ V++     +  L  + ++  LMD+IFP  +  +E+E   ++++ RT+ TLTL GE L+D EE   XXXXXXXX                                         VE++ SF H+  EYSLV+ ++P++L+A+ + + + +   LL E+ES +V  I+E L
Sbjct:   66 LEKLPEDD-DTPVPFVDVDKNEFIECYADSIAVVNGIEYTVGTPCDYPVALCFFDNEDQLIPIELDEELMDDIFPLAESIVEEEFGEELNLQRTSQTLTLMGE-LDDEEEXXXXXXXXXXXXXXXX-----------------------------------XVEIMISFEHKGREYSLVRLLDPVLLVAKNDPENSTKRI-LLTEEESNKVMPILEDL 245          
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Match: A0A7S2SJU0_9STRA (Hypothetical protein n=1 Tax=Rhizochromulina marina TaxID=1034831 RepID=A0A7S2SJU0_9STRA)

HSP 1 Score: 75.9 bits (185), Expect = 2.020e-11
Identity = 77/275 (28.00%), Postives = 122/275 (44.36%), Query Frame = 1
Query:  214 RLEPVPESQIDDVFVLREEDDNKVIEVYADRFAWVN--GKRYIIGHPCDWVVSVGVPRGKGGLEDVSVNSLLMDEIFPTLQGALEQEDIHVFRTAVTLTLQGEFLEDGEEYDEXXXXXXXXLE----------------GSQGEVDLEYEVLSEGDGDXXXXXXXXXERVPTDIDAVG------------------------VELIASFWHEDTEYSLVKHIEPLILIAR----EEGKGAEREYYLLGEKESQEVSGIVEGLVT------REAGG 882
            +LE V E   D V ++R ++  + IE + D    V   G  Y + HPCD VV++     +G +  +      MD+++P +   LE+E++++ RTA TLTLQG+   DGEE DE XX                       G+    D  Y+   +  G+              D+DA                          VE+IA F   + EYSLV+ ++P++LIA+     +G   E E+ LL E E++ ++ +VE  +       +EAGG
Sbjct:   75 QLEEVDE---DRVVIVRCKETLRAIECFIDWRIHVEETGLMYSVVHPCDEVVAICRYDNEGEMIPIDPEGTEMDDLYPFVSHMLEEEELYLMRTATTLTLQGDL--DGEEDDENXXADQDDFNVMDDIEVLNGEEWGPVGADTNEDFSYDDEGQDVGEWGLENDD-------DLDAXXXXXXXXXXXXXXXXXXXXXPGCDLVEVIADFELRNVEYSLVRVMDPVLLIAKVVTPADGTSEEEEFILLSEDEAERIAPLVEAAIEERKRLGKEAGG 337          
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Match: A0A7S1YW68_TRICV (Hypothetical protein (Fragment) n=1 Tax=Trieres chinensis TaxID=1514140 RepID=A0A7S1YW68_TRICV)

HSP 1 Score: 67.0 bits (162), Expect = 8.160e-9
Identity = 65/195 (33.33%), Postives = 96/195 (49.23%), Query Frame = 1
Query:  286 IEVYADRFAWVNGKRYIIGHPCDWVVSVGVPRGKGGLEDVSVNSLLMDEIFPTLQGALEQE---DIHVFRTAVTLTLQGEFLEDGEEYDEXXXXXXXXLEGSQGEVDLEYEVLSEGDGDXXXXXXXXXERVPTDIDAVGVELIASFWHEDTEYSLVKHIEPLILIAREEGKGAEREYYLLGEKESQEVSGIVEGL 861
            IE YAD  A + G  Y IG PCD  V++    G   L  V ++S LMD++FP  +  +E+E   ++ + RT  TLTL GE                           LE E       DXXXXXXXXX           VE++ SF H+  E+ +V+ ++P++L+ +E+ +  +R   LL  KES EV  ++E +
Sbjct:   99 IECYADSIATIGGATYTIGSPCDCSVALTYFGGGEKLMPVELDSELMDDVFPVAESIVEEEFGDELGLQRTPQTLTLVGE---------------------------LEAE-------DXXXXXXXXXXXXXXXXXEEEVEILLSFEHKGMEFHMVRLLDPVLLVGKEDPESPDRRI-LLTPKESDEVMPLLEEM 258          
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Match: A0A7S1BVV7_9STRA (Hypothetical protein n=1 Tax=Corethron hystrix TaxID=216773 RepID=A0A7S1BVV7_9STRA)

HSP 1 Score: 61.2 bits (147), Expect = 7.040e-7
Identity = 64/205 (31.22%), Postives = 97/205 (47.32%), Query Frame = 1
Query:  286 IEVYADRFAWV-NGKRYIIGHPCDWVVSVGVPRGKGGLEDVSVNSLLMDEIFPTLQGALEQE---DIHVFRTAVTLTLQGEF-LEDGE--EYDEXXXXXXXXLEGSQGEVDLEYEVLSEGDGDXXXXXXXXXERVPTDIDAVGVELIASFWHEDTEYSLVKHIEPLILIARE--EGKGAEREYYLLGEKESQEVSGIVEGLVTRE 873
            IEVY D  A + +GK+Y IG PCD+ V++        L  V + S LM +IFP  +  +E E   ++ +  T  TLTL GE  L+D E  EYDE                    E LS+                    D   V+++ SF HE  EYSLV+ ++P++L+A E    +    E+ +L  +ES+++   +E L+  E
Sbjct:   97 IEVYIDHVAELADGKKYHIGMPCDYAVTL-CHIEDDDLIPVELGSDLMGKIFPVAESLIEDEFGEELILQNTPQTLTLVGELDLDDSEDDEYDE--------------------EDLSD--------------------DEEEVQMLLSFDHEGKEYSLVRLLDPVLLVAGEPVNQESGVNEHEMLTIEESEKIIPELERLLMEE 260          
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Match: A0A2A2THK4_9CYAN (Uncharacterized protein n=1 Tax=Calothrix elsteri CCALA 953 TaxID=987040 RepID=A0A2A2THK4_9CYAN)

HSP 1 Score: 57.0 bits (136), Expect = 7.510e-6
Identity = 51/206 (24.76%), Postives = 92/206 (44.66%), Query Frame = 1
Query:  268 EDDNKVIEVYADRFAWVNGKRYIIGHPCDWVVSVGVPRGKGGLEDVSV--NSLLMDEIFPTLQGALEQEDIHVFRTAVTLTLQGEF--LEDGEEYDEXXXXXXXXLEGSQGEVDLEYEVLSEGDGDXXXXXXXXXERVPTDIDAVGVELIASFWHEDTEYSLVKHIEPLILIAREEGKGAEREYYLLGEKESQEVSGIVEGLVTRE 873
            +D  + +E Y +    V G+ Y++  P D  V +   +G    E+  +  +  +++EIFPT Q  L ++++ +  TA  LT+ GE   +E+ E +          LE    + DLE E L                           +L+A+F+HE+ EY++   ++PL+  AR    G      LL  +E ++V  ++E  +  E
Sbjct:   22 DDQGRSLECYVEHSLSVEGQEYVLLLPVDSPVEIFAWQGDDEEEEAILVEDDAIVEEIFPTAQAVLSEQNLILKNTAYALTVAGELPPVEESELF---------TLEIEDEDADLEPEQL---------------------------QLLATFYHEEQEYAIYTPLDPLLFFARFTKSGKPE---LLSPEEFRKVQPLLEEQLFNE 188          
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Match: A0A251WAF5_9CYAN (Uncharacterized protein n=2 Tax=unclassified Alkalinema TaxID=2635015 RepID=A0A251WAF5_9CYAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.230e-5
Identity = 54/176 (30.68%), Postives = 88/176 (50.00%), Query Frame = 1
Query:  286 IEVYADRFAWVNGKRYIIGHPCDWVVSVGVPRGKGGLEDVSVNSLLMDE-----IFPTLQGALEQEDIHVFRTAVTLTLQGEF--LEDGEEYDEXXXXXXXXLEGSQGEVDLEYEVLSEGDGDXXXXXXXXXERVPTDIDAVGVELIASFWHEDTEYSLVKHIEPLILIAREEGKG 792
            ++ Y +    V G+ Y++  P D  + +   +  GG E+ +V  L+ DE     IFPT +  L ++++ + RTAV LT++G+   LED E+YDEXXXXXXX  E                                       ++L+ASF+++D EYS+  H++P  ++AR + KG
Sbjct:   21 LDCYIEHSLSVEGQDYVLLLPVDSTIEIVTWQSDGGDEEEAV--LVEDEAEVQRIFPTAKAVLGEQNLVLKRTAVVLTVEGDLPDLED-EDYDEXXXXXXXQEE---------------------------------------LQLLASFYNQDQEYSVYAHLDPYFILARMDEKG 154          
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Match: A0A7C9U1J5_9CYAN (DUF3727 domain-containing protein n=1 Tax=Oscillatoria sp. SIO1A7 TaxID=2607767 RepID=A0A7C9U1J5_9CYAN)

HSP 1 Score: 56.2 bits (134), Expect = 1.580e-5
Identity = 53/216 (24.54%), Postives = 101/216 (46.76%), Query Frame = 1
Query:  223 PVPESQIDDVFVLREEDDNKVIEVYADRFAWVNGKRYIIGHPCDWVVSVGVPRGKGGLED-VSVNSLL--MDEIFPTLQGALEQEDIHVFRTAVTLTLQGEFLEDGEEYDEXXXXXXXXLEGSQGEVDLEYEVLSEGDGDXXXXXXXXXERVPTDIDAVGVELIASFWHEDTEYSLVKHIEPLILIAREEGKGAEREYYLLGEKESQEVSGIVEGL 861
            P  ESQ  ++  L+++   + +  Y + +     K+Y++  P D  V +   R  G  E+ V++++    +DEIFP  +  LE++++ + RTA+TLT  GE  +  E+                 E   EY+ L E               +  + D   ++ +A+F+ E+ EYS+   ++PL ++AR+  +G   E  LL  +E   +  ++  L
Sbjct:    8 PEKESQSPEICTLKDK-FGRSLPCYIEHYFEAEAKKYVVLLPVDLPVELFAWRESGDEEELVTIDNEAPEIDEIFPLAKAVLEEQNLTLNRTALTLTASGELPDIAED-----------------EPPEEYQQLGE---------------LREEDDYEELQWLATFYKEEQEYSIYAPLDPLFIVARQNKEG---EAELLSAEEESALEPMLPSL 187          
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2016.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 13
Match NameE-valueIdentityDescription
D8LHY2_ECTSI2.040e-5352.10Uncharacterized protein n=2 Tax=Ectocarpus TaxID=2... [more]
A0A835YQ15_9STRA2.510e-5146.48Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S2V6D6_9STRA1.520e-2937.17Hypothetical protein n=1 Tax=Fibrocapsa japonica T... [more]
A0A7S2QZU2_9STRA1.730e-1233.49Hypothetical protein n=1 Tax=Eucampia antarctica T... [more]
A0A7S2SJU0_9STRA2.020e-1128.00Hypothetical protein n=1 Tax=Rhizochromulina marin... [more]
A0A7S1YW68_TRICV8.160e-933.33Hypothetical protein (Fragment) n=1 Tax=Trieres ch... [more]
A0A7S1BVV7_9STRA7.040e-731.22Hypothetical protein n=1 Tax=Corethron hystrix Tax... [more]
A0A2A2THK4_9CYAN7.510e-624.76Uncharacterized protein n=1 Tax=Calothrix elsteri ... [more]
A0A251WAF5_9CYAN1.230e-530.68Uncharacterized protein n=2 Tax=unclassified Alkal... [more]
A0A7C9U1J5_9CYAN1.580e-524.54DUF3727 domain-containing protein n=1 Tax=Oscillat... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:466201..474766 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score70.5
Seed ortholog evalue1.4e-09
Seed eggNOG ortholog159749.K0RLM1
EggNOG free text desc.Protein of unknown function (DUF3727)
EggNOG OGs2B3Q5@1,2SC6V@2759,2XCBZ@2836
COG Functional cat.S
Best tax levelBacillariophyta
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionProtein of unknown function DUF3727
Ec32 orthologEc-18_000930.1
Exons7
Model size1359
Cds size807
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.528489-UTR-S-ischiensis_contig11:466200..4663051622815589.528489-UTR-S-ischiensis_contig11:466200..466305Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 466201..466305 +
1695739788.442982-UTR-S-ischiensis_contig11:466200..4663051695739788.442982-UTR-S-ischiensis_contig11:466200..466305Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 466201..466305 +
1622815589.6123579-UTR-S-ischiensis_contig11:474319..4747661622815589.6123579-UTR-S-ischiensis_contig11:474319..474766Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 474320..474766 +
1695739788.5242515-UTR-S-ischiensis_contig11:474319..4747661695739788.5242515-UTR-S-ischiensis_contig11:474319..474766Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 474320..474766 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815589.538785-CDS-S-ischiensis_contig11:466305..4664811622815589.538785-CDS-S-ischiensis_contig11:466305..466481Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 466306..466481 +
1695739788.4537685-CDS-S-ischiensis_contig11:466305..4664811695739788.4537685-CDS-S-ischiensis_contig11:466305..466481Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 466306..466481 +
1622815589.5489998-CDS-S-ischiensis_contig11:467717..4678861622815589.5489998-CDS-S-ischiensis_contig11:467717..467886Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 467718..467886 +
1695739788.4624286-CDS-S-ischiensis_contig11:467717..4678861695739788.4624286-CDS-S-ischiensis_contig11:467717..467886Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 467718..467886 +
1622815589.5617275-CDS-S-ischiensis_contig11:470451..4705111622815589.5617275-CDS-S-ischiensis_contig11:470451..470511Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 470452..470511 +
1695739788.4721565-CDS-S-ischiensis_contig11:470451..4705111695739788.4721565-CDS-S-ischiensis_contig11:470451..470511Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 470452..470511 +
1622815589.573749-CDS-S-ischiensis_contig11:471173..4712721622815589.573749-CDS-S-ischiensis_contig11:471173..471272Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 471174..471272 +
1695739788.4823027-CDS-S-ischiensis_contig11:471173..4712721695739788.4823027-CDS-S-ischiensis_contig11:471173..471272Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 471174..471272 +
1622815589.5842087-CDS-S-ischiensis_contig11:472275..4723821622815589.5842087-CDS-S-ischiensis_contig11:472275..472382Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 472276..472382 +
1695739788.4970953-CDS-S-ischiensis_contig11:472275..4723821695739788.4970953-CDS-S-ischiensis_contig11:472275..472382Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 472276..472382 +
1622815589.5935597-CDS-S-ischiensis_contig11:473383..4735041622815589.5935597-CDS-S-ischiensis_contig11:473383..473504Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 473384..473504 +
1695739788.5057132-CDS-S-ischiensis_contig11:473383..4735041695739788.5057132-CDS-S-ischiensis_contig11:473383..473504Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 473384..473504 +
1622815589.6028981-CDS-S-ischiensis_contig11:474244..4743191622815589.6028981-CDS-S-ischiensis_contig11:474244..474319Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 474245..474319 +
1695739788.5158188-CDS-S-ischiensis_contig11:474244..4743191695739788.5158188-CDS-S-ischiensis_contig11:474244..474319Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 474245..474319 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2016.1prot_S-ischiensis_contig11.2016.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 466306..474319 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2016.1

>prot_S-ischiensis_contig11.2016.1 ID=prot_S-ischiensis_contig11.2016.1|Name=mRNA_S-ischiensis_contig11.2016.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=269bp
MSSAGRGMAANNGRPKPKKGGGGKKDGRKSSRTSLPRLEPVPESQIDDVF
VLREEDDNKVIEVYADRFAWVNGKRYIIGHPCDWVVSVGVPRGKGGLEDV
SVNSLLMDEIFPTLQGALEQEDIHVFRTAVTLTLQGEFLEDGEEYDEDEQ
EDEEDLEGSQGEVDLEYEVLSEGDGDDGEEWEEEEERVPTDIDAVGVELI
ASFWHEDTEYSLVKHIEPLILIAREEGKGAEREYYLLGEKESQEVSGIVE
GLVTREAGGVPRDPNMTL*
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mRNA from alignment at S-ischiensis_contig11:466201..474766+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2016.1 ID=mRNA_S-ischiensis_contig11.2016.1|Name=mRNA_S-ischiensis_contig11.2016.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=8566bp|location=Sequence derived from alignment at S-ischiensis_contig11:466201..474766+ (Schizocladia ischiensis KU_0333)
TTCCTGCCAGCATCCTCGGGATTACTAGCAGCCTCCCCAAGGACGGCAGC TCCCAAGCTCAGCAGGCAGCCGGAGCGCCCAAGAGGGCCATGCGGAGGCC TGTCGATGTCGTCGGCGGGCAGGGGGATGGCCGCGAATAATGGAAGGCCC AAGCCAAAGAAAGGCGGAGGTGGCAAGAAGGACGGAAGGAAATCCAGCAG GACTTCACTCCCGCGTTTGGAACCCGTGCCAGAGAGCCAGATCGACGATG TCTTTGTGTTGCGGGAGGAGGATGATAACAAGTGAGTCTAGAGGATGCGA AAAGTGTCCGTTTCTTCCAAGTAACCACGACTGGTAAGGCATCTAGACAT GTGGCCACATGCAAGTCCTGGTAGCGCACCGAGACCCGCTGCCGTTCCAG TGGCCACCATTCAGCCGTCACATGTTGCAACGTGGGCACGGCCTGACCAC CCGTCCGTGCGCAGGCGATGCTTCTCCGCATTGGTATTGGGCTAGGCATG GAGTGACGCGTGTCCTAACTGGGTTACACAACCCTCCCGAGCGGTCTGTG TTCGTGATGCATGTTGCCAGCAACGCATGTGTTTCTTTAGCGAGGGCTCG CTTAACCCTTTTATCCCTGGGGTCCGTACAATCATAGGGTTTTGGTGTGT AAGTCCGGTTAAGGGGGCGTAAAAGGGTTAACGAGCGCCTGCTGCTGTTC CCGCCAGGACATCTGCCCGCGCACAGGCGGGGCGTTGAGGCTGGGCTCAG GGGTGGGGGACACCCTCCTGCTGTACCCCTTGACGGCGTACGACCGCGTG CCACCTGCACCGTGTGGAGCTCATATGTCTGCTTTGACTACAGTATATAT ACGTACTCATTGGCTTGTCTTGAGACGTAACCTTGCGTGCAATGCCGACA GCCCTAAGTCGAAACTTCGGGTTTGCCCTCCCACAGGAGTAGCTATTTAG CCATGGACGCGCGGGGTCAATGGTCTCGGGACTACGGCAAGCACCCTGTG AGTACATGTATATATATATACTCTCGCGTCCCAATTAGGCCGGGACGGAG CATGCCGGGTTTGCACCGGCCAGTACATATGGTACTGTGTCCTATGTACT TGCGTAGTACTGCACATAGTACTCGAGCGCATAAACATCACAGCAGCTGC TGCTACCGTAGCATTACATAACCATGTGCAGTCCTGCTGCTACTGGAGTA CGGTAATAGTATACTGTACTTGTGGCCACGCCGCCTAGCAACCTCCCTCC CTACTTCCCTCTATACACCAAAGTCCCCCCCTCACGCCGACCGGGTGCCT GTAAACCTGCCTGCTTGCCCGCCCGCCTGCCTGGCTGGTTGGCCCCCTGC CTGACCCCCTGCCTGCCCCCACTAATACGAGAACTCTCGATTCTTATCTG GGACAAGTACTAATACGAGAACATTCAATCTCACACACGTGCGATTGTAC CTCGTTAAAATTTTTATGAATTACCCCTGCCTGCCCCCAATATTGTGCCT CGGTCGCCCTCGCGCAGAGTAATCGAGGTTTACGCGGACCGCTTCGCCTG GGTGAACGGGAAGCGCTACATCATCGGCCACCCGTGCGACTGGGTGGTGT CGGTTGGCGTCCCCAGGGGGAAGGGGGGGCTGGAGGATGTCTCGGTGAAC TCCCTGCTCATGGATGAAATTTTCCCCACCCTGCAGGTGAGGGTGTACTT TTAATTGTGGTATGCCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCA AGCACCATGTGACTACATATATATATATATATATATATATATACCTGCTC CGTCTTGACCGAGGCGCGTGGTCAATGGTCTCGGGACTACGGCAAGCACC ACGTGGGTGAGTAAACATATATGTATACTTCGTACATACTGTACTTATTG GCTTGTCTTGTGGCGCGACCTTTTGTTGAGGTGGGAGATGCAGTACAGTA TACAGCACAGCGTGCAGTACAGTATTGTGCTACTGTACTGTAGCGGGTGT TTTATCTCGCTGCGCCTGCGGTTGTTTCGCTCCGGTGCGTACTGTACTAC TACTACGTAGTGTACTGTGTACTACTGTACTCGTACCAGCAGTGGTGGAA TATCGAATATTAAAATATACTACGTAGTATATACCAAAACGTTATATCGA ATAAATGTAACGATCACCACGTATGTCGACGTTATATTGGCTGATGTATT CATATTATTAAGTTTCGAGCGCGTCAGGACGACCCGGGCAAACACCTCCC ATGGAAGAAACTACTTGGTTTAGTGTGGGCTACAATATCACTATGTCGAT ATATCGATATATATGTATAACAAAGTCGTTATATCGATATATTTGTCGAT ATATATAACAAATCGGTTCAATATTCCATCACTCCGTACCAGTCTACTCT ACGAGGGCTTATGTGTGCGAAGCACACGCCGGCTGACTGTGGCTGCGTGC ATGACTTGTGCTTGTTTCTGTGTGCTATTCAAATACCTCTAAGTACAGTA CACAGCGCTCACAGATATGTACTCGTGCTTTACCCACATTGTGCTGCACT ACTGCTGCTACTCTACGTACTGTACTACAGTAGTCCAAGTCTGTACTGTA CTTCTGCTTGTGTGCTTGCTGTACTCTACACTACAGTGCTCTGGTCAATA CCTACAGTACTTGAGTACACAGGTTAGCTAAGTACCACGAGCGCTACGGA CATACTCAGAAGTGTACACACAGTAGTACAAGTGTTGTACTTCGTACTTG TATTCGAGTACTTCGCAGTACTATTGTACCTCGGAGTAATGCAGTACGTT GAAATGTGTACAGTACCACTATGCTGTGTGCTACTGCTGTGTGCTGTACT AGCACTAGCATGTACAGTAGTCTAGTCCCGGAAATGGTAAATATCAACGC TTTGGGGGAAAGCAGATATCTCAGCAACCATTGCGAGTTGACCGAAACCG AGAGGGCCACCAGAAAGCCCTCGCTCGGAAAAAACAAACTTCGTTTAGTT GGCCCCGGCCAACTCGTGGCCGATCAAGAGCAACTCGCGATAAACCACCA AGACATAGGGGCCCGGGCCGCGCCCGGGCCCCACGCTTTAAAGTCAGTGA AAATGGCCATGTCGGGAACGAGACCCATTGGCAAATATAACGCCCCGTTG CTGCAGGCACAGTCTCATGAACTGGCAGCATGCCAAATTGGGGGGATATC GTGCTGTCGGCATGGCGTGAGAATACAACCACTAATACAAGAACACTCAA TCTCACACACTTGCGATTTTACCTTGTTACTTCGAGTACAATTTATATGA ATCACCCCCCGTTTCGGGAAAAGTACTTGATTTTAATGTAGGATCCCCGA CTTGAGAGCGTTTTGGTGGCGAACAGCAATCATCGAGATGTGGATTCCGG CAGGCATCTCGTGATGAGTGAAGAATTGTGCGCCGCACACTACAGACGAG TTGTAACTTAGACCACGACGAGGCAACTCACGCGATGCCCGCAGAAGTGC CCCCACGTACTTTGTTCTTAGCTCCTTGATGTGATAGTCACTAATATAAT AACATTCAATTCTCAAACGAAACAACTACTAATACGAGAACAGTCCATCG CACACACGTGCGATTGTACCTCGTTACAATTTATATGAATCACTGCCCGT CTCATTGCCGTTGGCGAGCAATCGACCTTCGGCGGCCGCTCGTCCGAGAT CCGAGTCGTGGACGGTTGTGCGGCTGATGGCGAATGTCTCGAGACTGGCG TGGACGTGTGGGGCGATCGAGGCCGCGTTCTCTTCCTCACATCCAGGGCT TTTCGCTGGATACCCTCAGTTTTCACCAGTTCGCTGATGGTGTTGAGTTG TGAATTCCTGTATTGAATTTACTATTTGCGGGACTGTAGTAGTACATGTA GTAGTAGTACGTGGCAGTAGGAGGAGGAGGAGGAAGAGGAGGAGTAACAG GAACAACACAGGGCGAGGTGCAGGCCACGTCATCGTCGTCGTCGCAGTAG TAGTAGTAGTAGTACTTCGAAGTAGTAGTACTAGTAGTAGTAGTAGTACT TCGAAGTACAGTAGTAGCAAGTAGTAGTAGTAGTAGTACTGCATACCACT ACTGTACTACTGCAGTACTACTGTAGCAGCAGCAGATCCTTTGTACCGGA CCACCGGCTTCGCCAACCTTGGAATTCCGAACCGCTCCGGGGCCGACGTG CGTATGACATGCAATCTTGTGGTGGATGACATGCCATCTTGCGGTGCGCA GGGTGCCCTGGAGCAGGAGGACATCCACGTATTCCGGACAGCCGTCACGC TCACTCTCCAGGTGGGATCACCAAAGCCAACACAACATGCGCAGCACAGT GCAGTACAGAGCACCTACTACTGTACTGTAGTAGTCTTGTGTGCTTGGAA GTACTGTAGCACACTCCCGAGTGCTCGTGCGGTACTACAGAGTACCTACT AGTCTTGTGTAGTTGGAAGTACTGTACTCGTAGTACACTCCCGAGTCGGA TATGTTTGTAGCGTTTGTTGTACGGTTTCTCCGCGGTAGCTGAGCAAGCC CGCAAGCGGTCTGCTCGAGGGCGCCCGCCACCGCTCCGCCAAAAGCGTTC GGTCGGGAACACACCCGGAGTCCACAGGGTAAGACAAGACCCGCCCCGCC TCTGTTGCCTGTGGGACCAAAGAGCGAAGAGATGGGCCGCACCCAGTGTG CCGGGGCGGGACGCCCACGGACGTGGTTAGCTCGCAGCGTACCCGCGGCA AAGGTGGTTTAGCCCAGCATCCCCAAAGAACTCGATCTTGAATAGTTTCG CGATTTCGGCCATTGATTCAGGTCGCGACGTTCTAATACCACGTACTGTA GTACCGTTTCAAGCCCATCTCAAGAGCGTTCGATCGCACCATCTTGAGTA CCGCGAGCAACTTCAGTTCCAGAAAACACACGCGCGCGCGCTCGCGCTTC TGCCGCCGCCCCGGGCCTTGCAGGGGGAATTCTTGGAAGACGGCGAGGAG TACGATGAGGACGAACAAGAGGACGAGGAAGACCTGGAGGGCTCCCAGGG GGAGGTGGACCTAGAATACGAGGCAAGATGAGATGAGCGAGCGGATTGGT GCGGGCCCGGGGGGCACGGGTGGGGGGCAGTCCTGGAGCAGGTGCCTCTC TAGACTACCTACTTAGTGTAGTCGATAGTACTGTGAATGCTGAAAGCCGG GAGGGGGGTACTCATGAGTTGCCTCCCGTAGCCATGTGGCCATTGACCGC GCATCCCATATGGGTGACCCTATGGGACGGAGCGCTGTGCCATCTGCTGT TGGGGGGGCTGGCTACGGCCAACCTCTCCGTGGGTGCTGTCAATGCTGCC AGTATTTCGAAGTACTGCAGTACTGGTATATACTCGTAGCGGTTTGCCCC GGCCTCCAGGGACTTGTTTTTACGTTTCAGTGCGCTAAGAGGCGCCTGGT TTGTGCTCTCGTGGCCCGAGCCATTTGCTTGCATGGCTTGGTATCGCTAT CGCGCCCCTTTGGGTAGAACACCGGGTGGACTGCTGGACAGACCAACACC CAACAACGACTCGCGCTCGTGCATGACCGTGCCTGTGCCGTGGGCGGGTG TCCGTTCCCCGCCGGCGTCACCACCGCTCGTGACGAGTTCCAACTTTCCC TTGCCCATATGCCTCATGCTCCCTCGCTTGGCCCTCTCGAGCGAACTTGT CAGCTGTTGTTTTTTTGCGAGAAGATCAACAAGCGAGTGGGCAAGAAGAG GTGTCACTACCTACGCGAGTTCAGGGCTGTTGGTTCTTTGCCGTGCATGT ACTCGTACCCGTACAATGTACTATGTCTCGACCGAGGCGCATGGTCAATG ATCTCGGGACTACGGCAAGCACCACGTGAGTACATATATATATATATATG TAGAGCCTGGAGACAGTCGACCAGTACAGTACGGTTCGCCAGCCTGCGGT GATGTCCAACTGTGTCCCTACTTTTGTCATCCTCCTCCACCCCTGCCGCC GCCGCCGCCGCCGCCGCCGCCGGGCTGGGCTGTGGATGGGCTGCGGTGGC CCGCGGCGGGGCTGGCCGGGCACAGGTGCTATCTGAGGGGGACGGCGACG ACGGGGAGGAGTGGGAAGAGGAGGAAGAGCGCGTGCCTACCGACATTGAT GCGGTGGGGGTGGAGCTGATTGCGTCGTTCTGGTGAGAGGGGCGGTGGTC TGTGTGTTGTTTTGCTTGTTTTCTGTGCTTGGAGAGCGGCCCACTCTCTG TATTGTATGTGAGTCACTTGAGAACTGTCGTAGTATAGCCACCTGACCGC AGAGCTAGGTGTGACCCCGACTCGAGCCCGCCTTTGGTTGGCCGGACTGG TTACTTACGGCCGCCACTCACTCAGCAATGAAACGCCGTTGACCAAGATA GGTGTCGGCATGGAAAGCCCGAGGCAACACGGTTCTCGCAGTATTAACCC TTTTACCCCTGAGTTCCACATACACTCGTGGCCACGGGTGGGACCTTGCC GGAGCTTGCACCACCTTACCATACCTTGAGATACTATATTTGGTTACAGG GAACACATTACATTTTTTTGACCTTATATAAGGTGAAAATTGCCGGGGAC AACGTGTAAACGCCAGCCACCTTGCACAAGGTTGATGCTGCCTGCACATA TAAGGTGCACATGTCAACCTTGTGCTGTACAGTGTGGCTGGCGTTTACAC CTTGTCCCCGGCAATTTTCACCTTATATTGGGTGAAAATCTGTAATGTGT TCCCTGTACCCAAATATAGGATCGCAAGATCCGGCAAGGTTGTGCAAGGT CCGGCAAGGTCCCACCCGTGGCCACGTGTGTACTCATAGGGTTTTAGTGG GTAAGTCCAATTTAGCAGCGGTAAAAGGGTTAACAGGAACAACACAGGGC GAGGTGCAGGCCACGTCACTAAAGGCCTCAGCAGTGGCCCTTAGTTGCAG TTCCCGAAGTGCTTGCATGTGCTGTTACTGCACAAGCCACCTGCGAGTCC ATGCACTGCTCTGCATGCTCCCATATGCCATGGAGCACACCCTGACTTGT GCTGCTGCTCTGTGTGCGCGCGGGGCGTGCGAATATGCGCGTCTACATGT GATGTGCGCGCGGCGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGTGC GTGCGTGCGTGTGTGTTTGTTGTACTGTATTAGGCACGAAGACACCGAGT ACAGCCTGGTCAAGCACATCGAGCCCTTGATACTCATCGCCAGAGAGGAG GGCAAGGGCGCGGAGCGCGAATACTACCTGCTGGGGGAGAAGGAGTCGCA AGAGGTGTGTGCATTGGTGTATGGAGCATTGGGCGTGTGCCTTCCAAACG TCTGGCCGGTGAAGACCCGGCAAGCTCCATCCCAGCGTACCTACACTACC CATGCTGTGGTGTAGTGTTAGGGATGCGAGGCTAGCCGCAGGAAGGCTAC TTGTACCCTGCCGAGCAATGGTGTACGACTAATCCCCAACCCTAACCCTA ACCCTAAACCCAAAGGTCCTCCCTATCGTAAAATAGTCATATACCATTGC ATGTGAGGGCTGGCCGGCACTCCTTGTACAAGTACTTGGAAGCAGTGTGC TGGCCCGATGACCGGTGGCGTGCACAGGAACCTACGGGGAAGCTCCCCTG GAGGTGTCCGGACATGAGAACACACCTGTGCATTGTGCACGGTACTGTTC TGTATGTCCAAGTACTATGACACGGTTTACTCCAGTAGTTGTACTTTCCA AGTATGTGTCGTGCGTGCAGTACTACAGAGTGCTGTACATAGTATGGTGC AGCAACAATATGTGCTTCCAAGTATGTAAGTTACTACAGTGATCAACAGT CGTGTATCGACACGGGTGCACCCACCTGACACTCCTTGTGTGCCCTCTCT GCTTGTAGCGTTTAACACAGGTGCTTCCAACAGCAGTATCACCACATTTT AACCCTTTGAGATGAACCGTGACCCCCCGCGGCCCGCCGCCCCTGCCGAC AACGCACGCTTTTGTTGCGTTGCTAATCGTTTCTGGCGTTGCAGGTGTCA GGTATCGTGGAGGGACTAGTGACGCGAGAGGCTGGAGGCGTCCCCCGGGA TCCTAACATGACGCTGTAGAGTAACAAGCAACACACCGCAAAGGACAGGC GGTGGGATCTGCCGGGCCGGTCCTGAGGGTGGGGCTGCGCCGCCAGCGGC GCACTGGCAGGCAGAACTTACCCCGCATGATTTATGAACAATAGTTCGTA TGCAGTACTCACAATGATTCATCCAGAGCCTCTTCCAAGTACCTACAGTA CTGTGCTCTACTTGCCACTACTGTACATTTACAGTATCTGATGGCACCAT TGTGAGCTGGTTTTATTGTTTTTCCCGCCCCTTGCCCCCGACGCTGCTGC AGCGAGTGGGGGACAGTGTGCTCCGCTCGCAAGGCCCTGGCATTGGGTGC TTCGGAAGGCCAGGCAGCGGCGCTCATATACTGTACGAAAAATGGTCGTG ATTCTAATTCAAAACGACTAGATACAGTCACGGTAATATCAATCAAGCCT CGCTCGGCTGACCAGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:466201..474766+

>mRNA_S-ischiensis_contig11.2016.1 ID=mRNA_S-ischiensis_contig11.2016.1|Name=mRNA_S-ischiensis_contig11.2016.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1614bp|location=Sequence derived from alignment at S-ischiensis_contig11:466201..474766+ (Schizocladia ischiensis KU_0333)
ATGTCGTCGGCGGGCAGGGGGATGGCCGCGAATAATGGAAGGCCCAAGCC
AAAGAAAGGCGGAGGTGGCAAGAAGGACGGAAGGAAATCCAGCAGGACTT
CACTCCCGCGTTTGGAACCCGTGCCAGAGAGCCAGATCGACGATGTCTTT
GTGTTGCGGGAGGAGGATGATAACAAATGTCGTCGGCGGGCAGGGGGATG
GCCGCGAATAATGGAAGGCCCAAGCCAAAGAAAGGCGGAGGTGGCAAGAA
GGACGGAAGGAAATCCAGCAGGACTTCACTCCCGCGTTTGGAACCCGTGC
CAGAGAGCCAGATCGACGATGTCTTTGTGTTGCGGGAGGAGGATGATAAC
AAAGTAATCGAGGTTTACGCGGACCGCTTCGCCTGGGTGAACGGGAAGCG
CTACATCATCGGCCACCCGTGCGACTGGGTGGTGTCGGTTGGCGTCCCCA
GGGGGAAGGGGGGGCTGGAGGATGTCTCGGTGAACTCCCTGCTCATGGAT
GAAATTTTCCCCACCCTGCAGAGTAATCGAGGTTTACGCGGACCGCTTCG
CCTGGGTGAACGGGAAGCGCTACATCATCGGCCACCCGTGCGACTGGGTG
GTGTCGGTTGGCGTCCCCAGGGGGAAGGGGGGGCTGGAGGATGTCTCGGT
GAACTCCCTGCTCATGGATGAAATTTTCCCCACCCTGCAGGGTGCCCTGG
AGCAGGAGGACATCCACGTATTCCGGACAGCCGTCACGCTCACTCTCCAG
GGTGCCCTGGAGCAGGAGGACATCCACGTATTCCGGACAGCCGTCACGCT
CACTCTCCAGGGGGAATTCTTGGAAGACGGCGAGGAGTACGATGAGGACG
AACAAGAGGACGAGGAAGACCTGGAGGGCTCCCAGGGGGAGGTGGACCTA
GAATACGAGGGGGAATTCTTGGAAGACGGCGAGGAGTACGATGAGGACGA
ACAAGAGGACGAGGAAGACCTGGAGGGCTCCCAGGGGGAGGTGGACCTAG
AATACGAGGTGCTATCTGAGGGGGACGGCGACGACGGGGAGGAGTGGGAA
GAGGAGGAAGAGCGCGTGCCTACCGACATTGATGCGGTGGGGGTGGAGCT
GATTGCGTCGTTCTGGTGCTATCTGAGGGGGACGGCGACGACGGGGAGGA
GTGGGAAGAGGAGGAAGAGCGCGTGCCTACCGACATTGATGCGGTGGGGG
TGGAGCTGATTGCGTCGTTCTGGCACGAAGACACCGAGTACAGCCTGGTC
AAGCACATCGAGCCCTTGATACTCATCGCCAGAGAGGAGGGCAAGGGCGC
GGAGCGCGAATACTACCTGCTGGGGGAGAAGGAGTCGCAAGAGGCACGAA
GACACCGAGTACAGCCTGGTCAAGCACATCGAGCCCTTGATACTCATCGC
CAGAGAGGAGGGCAAGGGCGCGGAGCGCGAATACTACCTGCTGGGGGAGA
AGGAGTCGCAAGAGGTGTCAGGTATCGTGGAGGGACTAGTGACGCGAGAG
GCTGGAGGCGTCCCCCGGGATCCTAACATGACGCTGTAGGTGTCAGGTAT
CGTGGAGGGACTAGTGACGCGAGAGGCTGGAGGCGTCCCCCGGGATCCTA
ACATGACGCTGTAG
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