mRNA_S-ischiensis_contig11.2005.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2005.1
Unique NamemRNA_S-ischiensis_contig11.2005.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2005.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:375913..376474 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size244
Cds size228
Stop1
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2005.1prot_S-ischiensis_contig11.2005.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 375927..376474 -


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.0952077-UTR-S-ischiensis_contig11:375912..3759261622815576.0952077-UTR-S-ischiensis_contig11:375912..375926Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 375913..375926 -
1695739780.5222397-UTR-S-ischiensis_contig11:375912..3759261695739780.5222397-UTR-S-ischiensis_contig11:375912..375926Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 375913..375926 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.1051846-CDS-S-ischiensis_contig11:375926..3759391622815576.1051846-CDS-S-ischiensis_contig11:375926..375939Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 375927..375939 -
1695739780.6491153-CDS-S-ischiensis_contig11:375926..3759391695739780.6491153-CDS-S-ischiensis_contig11:375926..375939Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 375927..375939 -
1622815576.115889-CDS-S-ischiensis_contig11:376259..3764741622815576.115889-CDS-S-ischiensis_contig11:376259..376474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 376260..376474 -
1695739780.65842-CDS-S-ischiensis_contig11:376259..3764741695739780.65842-CDS-S-ischiensis_contig11:376259..376474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 376260..376474 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2005.1

>prot_S-ischiensis_contig11.2005.1 ID=prot_S-ischiensis_contig11.2005.1|Name=mRNA_S-ischiensis_contig11.2005.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=76bp
PTPGLEYSLAFWGGSHPGDASGHDCKPSTVRFRPWGGLTSNGGPGLIAER
GIGPALGDGSPAGACDPRGWAGKAF*
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mRNA from alignment at S-ischiensis_contig11:375913..376474-

Legend: polypeptideCDSUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2005.1 ID=mRNA_S-ischiensis_contig11.2005.1|Name=mRNA_S-ischiensis_contig11.2005.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=562bp|location=Sequence derived from alignment at S-ischiensis_contig11:375913..376474- (Schizocladia ischiensis KU_0333)
CCAACCCCGGGGCTGGAGTACTCTTTAGCATTCTGGGGAGGGAGCCACCC
CGGGGATGCATCGGGGCATGATTGCAAGCCTTCCACAGTGCGTTTCCGGC
CCTGGGGAGGATTGACATCCAATGGAGGGCCTGGACTCATTGCAGAACGA
GGAATCGGCCCCGCTCTCGGCGACGGAAGCCCAGCTGGAGCCTGTGATCC
CAGAGGCTGGGCAGGGTGAGGGGGGGGGGGGCAGGGGGGGTCTTAGTGCC
AGTGACCCACAGAGTAGGCCCAGGGCCAGCACCTCATTTGTAGAAAGTCC
TGTAGGCATGGCAGGGCGGCAGCCCAGTCGCCCTGCAGGGTCCGACGGGG
AAACCCCAAGCGTTGCATCGGCTGCGGACATAGCCCACAGTGACAGTGTG
GAGCAGCCGGGGCGGGGCTGGGGGGACCCAGACGCCGACCACGGCCAGGG
TAGGCCACGCCATGAACAGGCTTCACCTGTGGTAATGGAACCCCCACTAG
ACAATGCACTCGGTGACCCTGGTACCCTTGCTCAGGAAGGCGTTTTGACA
CCTGAGGGACAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:375913..376474-

>mRNA_S-ischiensis_contig11.2005.1 ID=mRNA_S-ischiensis_contig11.2005.1|Name=mRNA_S-ischiensis_contig11.2005.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=456bp|location=Sequence derived from alignment at S-ischiensis_contig11:375913..376474- (Schizocladia ischiensis KU_0333)
CCAACCCCGGGGCTGGAGTACTCTTTAGCATTCTGGGGAGGGAGCCACCC
CGGGGATGCATCGGGGCATGATTGCAAGCCTTCCACAGTGCGTTTCCGGC
CCTGGGGAGGATTGACATCCAATGGAGGGCCTGGACTCATTGCAGAACGA
GGAATCGGCCCCGCTCTCGGCGACGGAAGCCCAGCTGGAGCCTGTGATCC
CAGAGGCTGGGCAGGCCAACCCCGGGGCTGGAGTACTCTTTAGCATTCTG
GGGAGGGAGCCACCCCGGGGATGCATCGGGGCATGATTGCAAGCCTTCCA
CAGTGCGTTTCCGGCCCTGGGGAGGATTGACATCCAATGGAGGGCCTGGA
CTCATTGCAGAACGAGGAATCGGCCCCGCTCTCGGCGACGGAAGCCCAGC
TGGAGCCTGTGATCCCAGAGGCTGGGCAGGGAAGGCGTTTTGAGAAGGCG
TTTTGA
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