mRNA_S-ischiensis_contig11.2002.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2002.1
Unique NamemRNA_S-ischiensis_contig11.2002.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2002.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:334230..335384 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size1157
Cds size1155
Stop0
Start1
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.1541822-CDS-S-ischiensis_contig11:334229..3353841622815582.1541822-CDS-S-ischiensis_contig11:334229..335384Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 334230..335384 +
1695739784.1039424-CDS-S-ischiensis_contig11:334229..3353841695739784.1039424-CDS-S-ischiensis_contig11:334229..335384Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 334230..335384 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2002.1prot_S-ischiensis_contig11.2002.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 334230..335384 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2002.1

>prot_S-ischiensis_contig11.2002.1 ID=prot_S-ischiensis_contig11.2002.1|Name=mRNA_S-ischiensis_contig11.2002.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=385bp
MGQGNSKNDPRQAQTASHAESNVSLPNGTGRRALTSVGNVQPDGGATPQI
ERGHGAALSSVETVQPHGGATAAPQIDRGHASGGSSAGTVVAVALQTLGK
RSPRQRAAVTVTLQPGHHRPAARGRGSPPPPPLAAEPSPGPPRARAKVSH
TEAEKEVNAMTDDVSVTVAATAKFSELEVSLPLRLAALAAAPSTRTPQHA
RGEITHTATEEEEANAVTDDASVTAATAKFSVLEVSLPLRLAALAVTAAR
LPARAPAGPPPVHADVHARVRIVPTARFSVLEVSRPSPLRRPAAPGMAGP
LRRPAAQGMAGPARGRRTSVPDGNPQPKPDQTFAPGPPPAFCVPGVRVVA
TAKFSVLEVSGLRRPRRGQPRLRGPPADSDDSAGL
back to top

mRNA from alignment at S-ischiensis_contig11:334230..335384+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2002.1 ID=mRNA_S-ischiensis_contig11.2002.1|Name=mRNA_S-ischiensis_contig11.2002.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1155bp|location=Sequence derived from alignment at S-ischiensis_contig11:334230..335384+ (Schizocladia ischiensis KU_0333)
ATGGGGCAAGGAAACAGCAAAAATGACCCACGCCAGGCTCAGACTGCCAG
CCATGCGGAAAGCAACGTGAGCTTGCCGAATGGGACGGGCCGCCGGGCCT
TGACCTCGGTTGGGAATGTTCAGCCCGACGGTGGGGCCACCCCGCAGATT
GAGAGAGGGCACGGTGCGGCCTTGTCGTCGGTGGAGACTGTTCAGCCCCA
CGGTGGGGCCACCGCCGCCCCGCAGATTGACAGAGGGCATGCCAGCGGTG
GGTCGTCGGCTGGGACTGTTGTGGCCGTCGCCCTGCAGACTCTCGGGAAG
AGATCGCCGCGGCAGCGGGCAGCTGTGACGGTCACGCTGCAGCCCGGCCA
CCACCGCCCGGCCGCCCGCGGCCGCGGGTCGCCGCCGCCTCCACCGCTCG
CTGCTGAACCTTCTCCCGGGCCACCGCGGGCCCGGGCCAAGGTCAGCCAC
ACAGAGGCGGAGAAGGAAGTCAATGCCATGACAGACGACGTCTCGGTCAC
GGTGGCAGCGACTGCCAAGTTCTCCGAGCTCGAGGTCAGCCTGCCTCTGC
GGCTGGCCGCCCTGGCCGCTGCCCCTTCTACCAGGACGCCGCAACACGCC
CGTGGCGAGATCACCCACACAGCAACGGAGGAGGAGGAAGCCAATGCCGT
GACAGACGACGCCTCGGTCACGGCAGCGACTGCCAAGTTCTCCGTGCTCG
AGGTCAGCCTGCCTCTGCGGCTGGCCGCTCTGGCCGTGACTGCCGCCCGG
CTTCCGGCCCGGGCTCCTGCGGGGCCTCCACCAGTTCACGCTGATGTTCA
CGCCAGAGTCCGGATAGTGCCGACAGCCAGGTTCTCGGTGCTTGAGGTCA
GCAGACCCAGCCCTCTCCGCAGGCCCGCGGCTCCCGGAATGGCTGGGCCA
CTCCGCCGGCCCGCGGCTCAAGGAATGGCTGGGCCAGCCCGCGGTCGCCG
CACCAGCGTGCCTGACGGCAACCCCCAGCCCAAGCCCGACCAGACCTTCG
CGCCGGGGCCGCCCCCGGCGTTTTGCGTGCCAGGCGTCCGGGTCGTGGCC
ACCGCCAAGTTCTCTGTCCTTGAGGTCAGCGGCCTCCGCCGCCCCCGCCG
CGGCCAACCCCGCCTGCGGGGGCCCCCCGCCGACAGCGACGACTCGGCAG
GTCTC
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:334230..335384+

>mRNA_S-ischiensis_contig11.2002.1 ID=mRNA_S-ischiensis_contig11.2002.1|Name=mRNA_S-ischiensis_contig11.2002.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=2310bp|location=Sequence derived from alignment at S-ischiensis_contig11:334230..335384+ (Schizocladia ischiensis KU_0333)
ATGGGGCAAGGAAACAGCAAAAATGACCCACGCCAGGCTCAGACTGCCAG
CCATGCGGAAAGCAACGTGAGCTTGCCGAATGGGACGGGCCGCCGGGCCT
TGACCTCGGTTGGGAATGTTCAGCCCGACGGTGGGGCCACCCCGCAGATT
GAGAGAGGGCACGGTGCGGCCTTGTCGTCGGTGGAGACTGTTCAGCCCCA
CGGTGGGGCCACCGCCGCCCCGCAGATTGACAGAGGGCATGCCAGCGGTG
GGTCGTCGGCTGGGACTGTTGTGGCCGTCGCCCTGCAGACTCTCGGGAAG
AGATCGCCGCGGCAGCGGGCAGCTGTGACGGTCACGCTGCAGCCCGGCCA
CCACCGCCCGGCCGCCCGCGGCCGCGGGTCGCCGCCGCCTCCACCGCTCG
CTGCTGAACCTTCTCCCGGGCCACCGCGGGCCCGGGCCAAGGTCAGCCAC
ACAGAGGCGGAGAAGGAAGTCAATGCCATGACAGACGACGTCTCGGTCAC
GGTGGCAGCGACTGCCAAGTTCTCCGAGCTCGAGGTCAGCCTGCCTCTGC
GGCTGGCCGCCCTGGCCGCTGCCCCTTCTACCAGGACGCCGCAACACGCC
CGTGGCGAGATCACCCACACAGCAACGGAGGAGGAGGAAGCCAATGCCGT
GACAGACGACGCCTCGGTCACGGCAGCGACTGCCAAGTTCTCCGTGCTCG
AGGTCAGCCTGCCTCTGCGGCTGGCCGCTCTGGCCGTGACTGCCGCCCGG
CTTCCGGCCCGGGCTCCTGCGGGGCCTCCACCAGTTCACGCTGATGTTCA
CGCCAGAGTCCGGATAGTGCCGACAGCCAGGTTCTCGGTGCTTGAGGTCA
GCAGACCCAGCCCTCTCCGCAGGCCCGCGGCTCCCGGAATGGCTGGGCCA
CTCCGCCGGCCCGCGGCTCAAGGAATGGCTGGGCCAGCCCGCGGTCGCCG
CACCAGCGTGCCTGACGGCAACCCCCAGCCCAAGCCCGACCAGACCTTCG
CGCCGGGGCCGCCCCCGGCGTTTTGCGTGCCAGGCGTCCGGGTCGTGGCC
ACCGCCAAGTTCTCTGTCCTTGAGGTCAGCGGCCTCCGCCGCCCCCGCCG
CGGCCAACCCCGCCTGCGGGGGCCCCCCGCCGACAGCGACGACTCGGCAG
GTCTCATGGGGCAAGGAAACAGCAAAAATGACCCACGCCAGGCTCAGACT
GCCAGCCATGCGGAAAGCAACGTGAGCTTGCCGAATGGGACGGGCCGCCG
GGCCTTGACCTCGGTTGGGAATGTTCAGCCCGACGGTGGGGCCACCCCGC
AGATTGAGAGAGGGCACGGTGCGGCCTTGTCGTCGGTGGAGACTGTTCAG
CCCCACGGTGGGGCCACCGCCGCCCCGCAGATTGACAGAGGGCATGCCAG
CGGTGGGTCGTCGGCTGGGACTGTTGTGGCCGTCGCCCTGCAGACTCTCG
GGAAGAGATCGCCGCGGCAGCGGGCAGCTGTGACGGTCACGCTGCAGCCC
GGCCACCACCGCCCGGCCGCCCGCGGCCGCGGGTCGCCGCCGCCTCCACC
GCTCGCTGCTGAACCTTCTCCCGGGCCACCGCGGGCCCGGGCCAAGGTCA
GCCACACAGAGGCGGAGAAGGAAGTCAATGCCATGACAGACGACGTCTCG
GTCACGGTGGCAGCGACTGCCAAGTTCTCCGAGCTCGAGGTCAGCCTGCC
TCTGCGGCTGGCCGCCCTGGCCGCTGCCCCTTCTACCAGGACGCCGCAAC
ACGCCCGTGGCGAGATCACCCACACAGCAACGGAGGAGGAGGAAGCCAAT
GCCGTGACAGACGACGCCTCGGTCACGGCAGCGACTGCCAAGTTCTCCGT
GCTCGAGGTCAGCCTGCCTCTGCGGCTGGCCGCTCTGGCCGTGACTGCCG
CCCGGCTTCCGGCCCGGGCTCCTGCGGGGCCTCCACCAGTTCACGCTGAT
GTTCACGCCAGAGTCCGGATAGTGCCGACAGCCAGGTTCTCGGTGCTTGA
GGTCAGCAGACCCAGCCCTCTCCGCAGGCCCGCGGCTCCCGGAATGGCTG
GGCCACTCCGCCGGCCCGCGGCTCAAGGAATGGCTGGGCCAGCCCGCGGT
CGCCGCACCAGCGTGCCTGACGGCAACCCCCAGCCCAAGCCCGACCAGAC
CTTCGCGCCGGGGCCGCCCCCGGCGTTTTGCGTGCCAGGCGTCCGGGTCG
TGGCCACCGCCAAGTTCTCTGTCCTTGAGGTCAGCGGCCTCCGCCGCCCC
CGCCGCGGCCAACCCCGCCTGCGGGGGCCCCCCGCCGACAGCGACGACTC
GGCAGGTCTC
back to top