mRNA_S-ischiensis_contig11.2000.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.2000.1
Unique NamemRNA_S-ischiensis_contig11.2000.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.2000.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:328031..328560 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size531
Cds size306
Stop0
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.0939837-UTR-S-ischiensis_contig11:328030..3282541622815582.0939837-UTR-S-ischiensis_contig11:328030..328254Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 328031..328254 +
1695739784.0839274-UTR-S-ischiensis_contig11:328030..3282541695739784.0839274-UTR-S-ischiensis_contig11:328030..328254Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 328031..328254 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815582.1078165-CDS-S-ischiensis_contig11:328254..3285601622815582.1078165-CDS-S-ischiensis_contig11:328254..328560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 328255..328560 +
1695739784.0947115-CDS-S-ischiensis_contig11:328254..3285601695739784.0947115-CDS-S-ischiensis_contig11:328254..328560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 328255..328560 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.2000.1prot_S-ischiensis_contig11.2000.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 328255..328560 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.2000.1

>prot_S-ischiensis_contig11.2000.1 ID=prot_S-ischiensis_contig11.2000.1|Name=mRNA_S-ischiensis_contig11.2000.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=102bp
MRHAFYCTVQYSSTILRSTKYRNCSSEKERTHHHVGHAVFPSPSTMSLER
ERKHLHSRDSADLYCTSVILLYSSTEYLSTNYCMYTPQVHQYVRVEVLIP
QY
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mRNA from alignment at S-ischiensis_contig11:328031..328560+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.2000.1 ID=mRNA_S-ischiensis_contig11.2000.1|Name=mRNA_S-ischiensis_contig11.2000.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=530bp|location=Sequence derived from alignment at S-ischiensis_contig11:328031..328560+ (Schizocladia ischiensis KU_0333)
GTGGGGGTGTGTGTGGAGCGGGGCGGCATGAGCGACGGCGGCGCGGCAGG
CAGGCAGTGCTCTTACTCACTTGTAGGGGTAATGGGGAGCCAGCGGGACG
CGCATTACGACTAACGGATTGGGTCCACGCCTGAAAACATACTTCCGGAA
GTACACTGCTGTACTGTATGTATCGTGGACTTGTCGTGTCTGGGCTATGG
CAGGCACAAGACGAGTAAGTGCACATGAGACATGCATTCTACTGTACTGT
ACAGTACAGCAGCACCATACTTCGAAGTACAAAGTACAGGAACTGCTCTT
CTGAGAAAGAACGCACACATCATCACGTCGGGCATGCCGTGTTTCCGAGC
CCATCGACCATGAGCCTCGAACGAGAACGAAAGCACTTGCACTCTAGAGA
CTCTGCCGACTTGTATTGTACTTCTGTTATACTACTGTACTCGAGTACTG
AGTACTTGAGTACGAACTACTGTATGTATACTCCCCAAGTACACCAGTAC
GTGCGGGTCGAAGTACTCATACCGCAGTAC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:328031..328560+

>mRNA_S-ischiensis_contig11.2000.1 ID=mRNA_S-ischiensis_contig11.2000.1|Name=mRNA_S-ischiensis_contig11.2000.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=612bp|location=Sequence derived from alignment at S-ischiensis_contig11:328031..328560+ (Schizocladia ischiensis KU_0333)
ATGAGACATGCATTCTACTGTACTGTACAGTACAGCAGCACCATACTTCG
AAGTACAAAGTACAGGAACTGCTCTTCTGAGAAAGAACGCACACATCATC
ACGTCGGGCATGCCGTGTTTCCGAGCCCATCGACCATGAGCCTCGAACGA
GAACGAAAGCACTTGCACTCTAGAGACTCTGCCGACTTGTATTGTACTTC
TGTTATACTACTGTACTCGAGTACTGAGTACTTGAGTACGAACTACTGTA
TGTATACTCCCCAAGTACACCAGTACGTGCGGGTCGAAGTACTCATACCG
CAGTACATGAGACATGCATTCTACTGTACTGTACAGTACAGCAGCACCAT
ACTTCGAAGTACAAAGTACAGGAACTGCTCTTCTGAGAAAGAACGCACAC
ATCATCACGTCGGGCATGCCGTGTTTCCGAGCCCATCGACCATGAGCCTC
GAACGAGAACGAAAGCACTTGCACTCTAGAGACTCTGCCGACTTGTATTG
TACTTCTGTTATACTACTGTACTCGAGTACTGAGTACTTGAGTACGAACT
ACTGTATGTATACTCCCCAAGTACACCAGTACGTGCGGGTCGAAGTACTC
ATACCGCAGTAC
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