mRNA_S-ischiensis_contig11.1998.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1998.1
Unique NamemRNA_S-ischiensis_contig11.1998.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.1998.1 vs. uniprot
Match: D7FJ63_ECTSI (WW domain-containing protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ63_ECTSI)

HSP 1 Score: 84.7 bits (208), Expect = 3.590e-17
Identity = 50/91 (54.95%), Postives = 67/91 (73.63%), Query Frame = 1 
Query:    7 LLSVFANPDTGPEKALKASLQAEFNAQAKEVLKQADHSGAELEFPQAVEIAKEDILLRRMDDERARVREEMLVAAAEYEEQQKTILAEKEE 279
            L +V A+PD  PEKAL+ +L+AE  AQ K VLK AD   A+LE P+A++IAKEDILL +MD ER RV +EM  AAA++ E++  + A+KEE
Sbjct:    2 LEAVLAHPDNEPEKALQKTLKAEIEAQKKVVLKMADDVEADLEAPEALDIAKEDILLSKMDQERERVNQEMKAAAAKFLEEEARVKADKEE 92
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BLAST of mRNA_S-ischiensis_contig11.1998.1 vs. uniprot
Match: A0A6H5JES2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES2_9PHAE)

HSP 1 Score: 84.3 bits (207), Expect = 5.230e-17
Identity = 49/93 (52.69%), Postives = 68/93 (73.12%), Query Frame = 1 
Query:    1 RYLLSVFANPDTGPEKALKASLQAEFNAQAKEVLKQADHSGAELEFPQAVEIAKEDILLRRMDDERARVREEMLVAAAEYEEQQKTILAEKEE 279
            + L +V A+PD  PEKAL+ +L+AE  AQ K VLK AD + A+LE P+A++IAKEDILL +MD ER RV +EM  AAA++  ++  + A+KEE
Sbjct:  632 KMLEAVLAHPDNEPEKALQKTLKAEIEAQKKVVLKMADDAEADLEAPEALDIAKEDILLSKMDQERERVNQEMKAAAAKFLAEEARVKADKEE 724
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BLAST of mRNA_S-ischiensis_contig11.1998.1 vs. uniprot
Match: A0A835Z473_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z473_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 3.170e-11
Identity = 36/69 (52.17%), Postives = 51/69 (73.91%), Query Frame = 1 
Query:   25 NPDTGPEKALKASLQAEFNAQAKEVLKQADHSGAELEFPQAVEIAKEDILLRRMDDERARVREEMLVAA 231
            +P+T  E AL+A LQAE   ++K V+K AD    +LE+P+A+EIAKE +L RRMD+ER +V++EM  AA
Sbjct:    2 HPETSEEAALRAGLQAEIXXESKAVIKLADDQRIDLEWPEAMEIAKEQVLKRRMDEERRQVKKEMEAAA 70
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BLAST of mRNA_S-ischiensis_contig11.1998.1 vs. uniprot
Match: A0A7S1XNR9_9STRA (Hypothetical protein n=1 Tax=Phaeomonas parva TaxID=124430 RepID=A0A7S1XNR9_9STRA)

HSP 1 Score: 65.5 bits (158), Expect = 2.220e-10
Identity = 36/77 (46.75%), Postives = 50/77 (64.94%), Query Frame = 1 
Query:   13 SVFANPDTGPEKALKASLQAEFNAQAKEVLKQADHSGAELEFPQAVEIAKEDILLRRMDDERARVREEMLVAAAEYE 243
            +V  NP T  EK L+  L  E   + K V+K AD     +E P+A  +A+E++L++RM+DER RVR+EML AA EYE
Sbjct:  659 NVLGNPMTPEEKKLEKELHKEIKERGKVVIKAADKRNIPMEIPEAEVVAREEVLVKRMNDERLRVRDEMLKAAQEYE 735
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1998.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 4
Match NameE-valueIdentityDescription
D7FJ63_ECTSI3.590e-1754.95WW domain-containing protein n=1 Tax=Ectocarpus si... [more]
A0A6H5JES2_9PHAE5.230e-1752.69Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
A0A835Z473_9STRA3.170e-1152.17Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
A0A7S1XNR9_9STRA2.220e-1046.75Hypothetical protein n=1 Tax=Phaeomonas parva TaxI... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:317492..320736 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size282
Cds size279
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1998.1prot_S-ischiensis_contig11.1998.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 317492..320734 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.1608338-CDS-S-ischiensis_contig11:317491..3175601622815588.1608338-CDS-S-ischiensis_contig11:317491..317560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 317492..317560 +
1695739787.4839573-CDS-S-ischiensis_contig11:317491..3175601695739787.4839573-CDS-S-ischiensis_contig11:317491..317560Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 317492..317560 +
1622815588.1754649-CDS-S-ischiensis_contig11:319278..3194121622815588.1754649-CDS-S-ischiensis_contig11:319278..319412Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 319279..319412 +
1695739787.4925072-CDS-S-ischiensis_contig11:319278..3194121695739787.4925072-CDS-S-ischiensis_contig11:319278..319412Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 319279..319412 +
1622815588.1858964-CDS-S-ischiensis_contig11:320658..3207341622815588.1858964-CDS-S-ischiensis_contig11:320658..320734Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 320659..320734 +
1695739787.5023348-CDS-S-ischiensis_contig11:320658..3207341695739787.5023348-CDS-S-ischiensis_contig11:320658..320734Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 320659..320734 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1998.1

>prot_S-ischiensis_contig11.1998.1 ID=prot_S-ischiensis_contig11.1998.1|Name=mRNA_S-ischiensis_contig11.1998.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=93bp
RYLLSVFANPDTGPEKALKASLQAEFNAQAKEVLKQADHSGAELEFPQAV
EIAKEDILLRRMDDERARVREEMLVAAAEYEEQQKTILAEKEE
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mRNA from alignment at S-ischiensis_contig11:317492..320736+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1998.1 ID=mRNA_S-ischiensis_contig11.1998.1|Name=mRNA_S-ischiensis_contig11.1998.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=3245bp|location=Sequence derived from alignment at S-ischiensis_contig11:317492..320736+ (Schizocladia ischiensis KU_0333)
AGATACCTCCTGAGCGTGTTTGCTAACCCCGACACGGGACCGGAGAAGGC
CCTCAAGGCCAGCCTCCAGGTGAGGTGCTCGCCAGTGATGGAATATCTAG
GCACATCAACTTGTATTTATCGACAGTACTGATCTATTTTGAGTGGTAGA
TAAGCGGCAAGTTCCAGGCCCCGTGCCAAAAGGCTCGTCCCGAAACGGGG
CTCAACGATCTATTTTGAGTGGTAGATAACCGGCGAGTTCCAGGCCCCGT
GCCAAAAGGCTCGTCCCGAAACGGGGCTCAACGATCTATTTTGAGTGGTA
GATAACCGGCGAGTTCCAGGCCCCGTGCCAAAAGGCTCGTCCCGAAACGG
GGCTCAACGATCTATTTTGAGTGGTATATAAGCGGTGAGTTCCAGGCCCC
GTACCAAAAGGCTCGTCCCGAAACGGGGCTCAACGATCTATTTTGAGTGG
TAGACAAGCGGCAAGTTCCAGGCCCCGTGCCAAACGACTCGTCCCGAAAC
GGACTCAACGAAGCCCTTCCTTCCCTCGCAGGGCAAGAAGAAAATCTATA
TATCTATCGATAGTCAATATTCGATAGTTTGACCCACACTAACTCCAAAT
CGTTAGTGACGCCGCCCACAAAATCAATCAAGCCCGATAACTATCTACTG
ATCGATTCTCCATCACTGGGGTTCGCTGTATTTGGAAGTACAGTGCATGC
TACTTACAGTGCACGAAGTACAGTGGTATATATATATGTACTCAAGTACT
GTACATGCTACAGTATGTACATGCTACAGTGCACGAGGTACAGTGGTACC
TCCAAGTACGCAAGCGCTGTACACTACAGTACAGGAGCACTGCGCACAGT
ACCTACCACTGTATAGTCAGTACGTGCTACAGTGCATGAAGTACAGTGGT
AACTCCGAGTACTCACGTACTGTACACTACAGTACAGGAGTGCTGCGCAC
AGTACCTACCACTGTAGGAGTCCTACGGTACGGTACTGTACGACTGTACT
ACCGTAGTACTACAGTACGAGTGTTACTGTACTCTTGCAGGTACTCCGCG
GAAGCATGGTGCGCAGCAAGTACTGGCACACAAGCACCTCAAAATGCTAT
TGTACGGATGGGCCACGGTCGAAGCCCCACCTGCCTGCCTGACCAATGCC
TCGCCAGCTTTGTGCCGTCCCGCCTGGCATGCACACTGCAAACCCATCCC
ATGCTTGAGCCCCCCCCCCCTTGGCCTGCACGCGCCGCCCCCCCGGGCGG
CTTGGCTTGCCTCAAGCATTTCATAGTCGTGATGGATGTTCGAGGAGCGT
ACTTTTAAGACGTTTATTGGGCTGTGAGTATACGGTATATACCTAGGGCC
CCTGTCGGGGTGCGATCACGCGCTGTATTTTTGTATGCAGTACACTCGCT
GTAAGCACTTTGAAGCTCATGTAGTCCACGTCCGAGTAGTAGAGTACCAA
GTACTGCCAAGCATGTTTACGGATGCGTGCGAGTGTACAATCAACCCCAT
GCTTACAAGTGCTCGTTTCGCGTTTAGTTAAAATTCTTGCATGTGATAAC
CACTACGTAATACGAGAACACTTGATTCTTAAATATGATAGCCACGAATG
CGAGAACCCTCAATCTCACACATGTGCGTTTGTACCTCATTACATAAAAA
ACAAATGGATGGCATGTGAGTTCGCTTAGTTTCGAATGCAGAATGCTTTA
GAGATAATATATCACGAACATACGTGAGTGTGTCTCGAACGACGAGCATC
CTGCAACGGCTCCTGTATTGCACACCGCATTTTGCAGGCGGAGTTCAACG
CACAGGCCAAGGAGGTTCTGAAACAGGCCGACCACTCGGGGGCGGAGCTG
GAGTTCCCCCAGGCAGTGGAGATCGCCAAGGAGGACATCCTCCTCCGGAG
AATGGACGATGAGCGAGCCAGGTGATTAACAAGGATCAATGTTAACCTTT
AAAGATACTGCACCCATAGGGAGAATGGACAATGGGCGTGCCAGGTGATT
AATAGGGATCAACATTAACTTATTGAGGTACTGCACTCATAATGGACAAG
TAGCAAGCGAGAGATTGCCAAAGAGGGCGTCCTTCTCCGGAGAATGGACG
ACGAGCAAGCCAGGTGATTAACCCTTTTACCCCTCGGGTCCATATAGTCA
CAGGGTTTTAGTGTGTAAGTCCAATTTAGCAGGGGTAAAAGGATTGAGGA
TCAACATCAATTTTTCAAGATACTGAGCTCATATTGGATGAGTAGCAAGC
GAGATGTGGTCCATGTCTGTGCAGCAAGTCCTTGGAGACGCACGTTGATG
TGCTGGGGCACGTGCCTAAATGTGTGATGAATGCTCAGCCCGGCGTCACG
TGCAGCCGACCGATTTTTTTCCCCGTCTTCTTTTGCTTTCTTGGCCGGAC
GCCTTCTTTGGCACTCCTCGTTTCTCTTCTTCTTCTTCTTCTTCTCCTCC
TCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTCCTC
CTCCTCCTCCTCCTCCTCCTCTCTTCTTCTTCTTCTTCTTCTCTTTGTCG
CCGAAATGCACTCTAGTCTGCGGTATGAGTACTCATCGTTTCCTTGCTCG
TCTGCCCTGCGAGCGAAAGAAACAAGGGCCGAGGCTGTTGGCGAGGTCCA
AAAAAACGGAGCTCGCTCGGCGCAGCGTCGCCCTCGTAGCACACTGCGTT
CGCCCTTGCGGTGAAACTCGGGGTGGTAAAAACCGCAGGGCTTGAGTGTG
GCATCAGGGCACGGTCATTCCTCAGAGGCTCTAAGGGTTAATTGATGTGC
TTTTGAAGTATGCTTCGAAGTCCACCCTCACTGGAGAAGTTTCTCGCGCA
GCAGTTTGTATTTCTTCCAGAAGAACTTCCTCCATACCATACCCTACCAA
TAGAGTATGCATGCAAGTGGACTTCACACGTCCGTGGCTGTGGCCGCGCG
CTCTCCATCCCGTCCCATCCCATCTGTCTGTCTGTCTGTCTGTCTGCACG
CGAGTTGAACCCAGGGTTGGCACCTAGACCTAATTAGGGCCTAGTCAGTC
TTCATTTTAGGTATAATTACCCCTAATTACCTCCAATCAAGGGCCTAAAG
GGCCCCACCTAGGGGGTAAGTACCAACCTGCGCGCAAACTGCCCCCCCCC
ATGCACACAACCTCCAGAGTGAGAGAGGAGATGCTGGTGGCGGCAGCAGA
ATACGAGGAGCAGCAGAAGACGATATTGGCTGAGAAGGAGGAGAA
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:317492..320736+

>mRNA_S-ischiensis_contig11.1998.1 ID=mRNA_S-ischiensis_contig11.1998.1|Name=mRNA_S-ischiensis_contig11.1998.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=558bp|location=Sequence derived from alignment at S-ischiensis_contig11:317492..320736+ (Schizocladia ischiensis KU_0333)
AGATACCTCCTGAGCGTGTTTGCTAACCCCGACACGGGACCGGAGAAGGC
CCTCAAGGCCAGCCTCCAGAGATACCTCCTGAGCGTGTTTGCTAACCCCG
ACACGGGACCGGAGAAGGCCCTCAAGGCCAGCCTCCAGGCGGAGTTCAAC
GCACAGGCCAAGGAGGTTCTGAAACAGGCCGACCACTCGGGGGCGGAGCT
GGAGTTCCCCCAGGCAGTGGAGATCGCCAAGGAGGACATCCTCCTCCGGA
GAATGGACGATGAGCGAGCCAGGCGGAGTTCAACGCACAGGCCAAGGAGG
TTCTGAAACAGGCCGACCACTCGGGGGCGGAGCTGGAGTTCCCCCAGGCA
GTGGAGATCGCCAAGGAGGACATCCTCCTCCGGAGAATGGACGATGAGCG
AGCCAGAGTGAGAGAGGAGATGCTGGTGGCGGCAGCAGAATACGAGGAGC
AGCAGAAGACGATATTGGCTGAGAAGGAGGAGAGTGAGAGAGGAGATGCT
GGTGGCGGCAGCAGAATACGAGGAGCAGCAGAAGACGATATTGGCTGAGA
AGGAGGAG
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