mRNA_S-ischiensis_contig11.1997.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1997.1
Unique NamemRNA_S-ischiensis_contig11.1997.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.1997.1 vs. uniprot
Match: D7FJ64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ64_ECTSI)

HSP 1 Score: 89.0 bits (219), Expect = 6.250e-18
Identity = 59/137 (43.07%), Postives = 88/137 (64.23%), Query Frame = 1 
Query:   16 VILEEYYDREMMKVDAYVEH------FEQERREEIAAKLQRLWRSHRSRAQYQEQKEMMIKRQQAENEMRKMALDRERELQAYKKELSKWFTEQREEAERNRMNEEQTVKEKYKVVLYRRREKDRQLAEKKKRKEMA 408
            +  +EY+DREM  +DA VE        E   R + ++KLQRLWR+ R R + + +K  MIK  + E EM+++     RE + YK++L  WF EQ++E E++ M EE T KEK+K++ YRRRE+DR  AE ++RK+ A
Sbjct:  455 IAAQEYFDREMAVIDAEVERGQTRQRVEYRSRHKASSKLQRLWRARRQRRRLEAEKLRMIKIHEVEAEMQQLLSREAREAEVYKRQLMAWFKEQKKEQEQSTMLEEHTAKEKFKILCYRRRERDRVAAETRRRKQAA 591
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1997.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 1
Match NameE-valueIdentityDescription
D7FJ64_ECTSI6.250e-1843.07Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:310521..315665 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons4
Model size415
Cds size414
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1997.1prot_S-ischiensis_contig11.1997.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 310521..315665 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815588.0868127-CDS-S-ischiensis_contig11:310520..3105471622815588.0868127-CDS-S-ischiensis_contig11:310520..310547Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 310521..310547 +
1695739787.4441745-CDS-S-ischiensis_contig11:310520..3105471695739787.4441745-CDS-S-ischiensis_contig11:310520..310547Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 310521..310547 +
1622815588.0989246-CDS-S-ischiensis_contig11:311869..3120311622815588.0989246-CDS-S-ischiensis_contig11:311869..312031Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 311870..312031 +
1695739787.458518-CDS-S-ischiensis_contig11:311869..3120311695739787.458518-CDS-S-ischiensis_contig11:311869..312031Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 311870..312031 +
1622815588.114355-CDS-S-ischiensis_contig11:312850..3130001622815588.114355-CDS-S-ischiensis_contig11:312850..313000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 312851..313000 +
1695739787.4681578-CDS-S-ischiensis_contig11:312850..3130001695739787.4681578-CDS-S-ischiensis_contig11:312850..313000Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 312851..313000 +
1622815588.1272094-CDS-S-ischiensis_contig11:315590..3156651622815588.1272094-CDS-S-ischiensis_contig11:315590..315665Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 315591..315665 +
1695739787.4759104-CDS-S-ischiensis_contig11:315590..3156651695739787.4759104-CDS-S-ischiensis_contig11:315590..315665Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 315591..315665 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1997.1

>prot_S-ischiensis_contig11.1997.1 ID=prot_S-ischiensis_contig11.1997.1|Name=mRNA_S-ischiensis_contig11.1997.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=138bp
RKRVRVILEEYYDREMMKVDAYVEHFEQERREEIAAKLQRLWRSHRSRAQ
YQEQKEMMIKRQQAENEMRKMALDRERELQAYKKELSKWFTEQREEAERN
RMNEEQTVKEKYKVVLYRRREKDRQLAEKKKRKEMADE
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mRNA from alignment at S-ischiensis_contig11:310521..315665+

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1997.1 ID=mRNA_S-ischiensis_contig11.1997.1|Name=mRNA_S-ischiensis_contig11.1997.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=5145bp|location=Sequence derived from alignment at S-ischiensis_contig11:310521..315665+ (Schizocladia ischiensis KU_0333)
AGGAAGAGAGTGCGCGTCATCCTAGAGGCAAGTCCGTTGCCCAAACCTAA
GCTTAATCCTTTTACCCCTGCTAAAGTGGACTTACACAATAAAACCCTAT
GATTGCACGGACCCCAGGGGTAGAAGGGTTAGCCCTAGCCCTGACCCCTC
ACGTCAACCCTAGGCCTAGGCCCGGGCAAGGGGGAGAGCGCACGCGGCGC
TAGAGGCAAGGGCTTTCCTCTGGCCAGTCGCTCGCACCGGCCAGTGTATC
TGGAAAAGGGCCCGTGGCGGCCGATGTGCTACTGTACGCGCGTACCACTG
TACAAGTACAGTACTCGGATACTGTGCTCCGGAATAAACACCGAGCGAGG
TGCGGTCCACGTCGCTAGTGACTGCACGTACTGTACTTCGTACTTCGTAC
TGTGTGTACAGTAGTAGGTGCTCATTTCATTAACTTTTGGGGGGGACAAG
TGCTCGTGCGGGTGCCCCGCACGGGGCCGTCGGCCGGGCAGCGGGACCCG
CCCTGGTTGTGAGGGAGGGGTGCAGTACTGCAGGGTCGAGAGGGAAAGAG
GGCACCAAGGTTACGGAGATCAATTGTCGAGCAAGGGCCCAATGTGAGGG
GGCGGAGGGAGAAAACAAGGCAGACGGGGAAGGGCAAGGCAGGGAAGGGA
TTGGAGGGGAGAGCAGGGGATGGGAGGGGAGGAGAGGAGAGAGGAGGGGA
GGAGAGGGCAGGGGAAGGGGGAGGGGTGGGAAGGCCCGGGGGTAAGTACG
GGGGAAGCCAGGGCGGGGGCTAGGCAAGGCGGGGCTGCCCAGGGCAGGGA
GGCCATGGCGCTCCTGGTACAGAGGGGTACCGGCACTGTACTCTACTACT
GTGTGAGCACGTAGTAGTAGCCTGCGCATACCTTACAAGTACCTACCTAC
CACCAGGAGACCCAGATACGAGGGGCCCCGGCCTCTTGCCTTTCAACGCC
CCGCGACAAGAAGCCACTCGCACAAAACACATACGCACAAGCAGAAGGCG
CTCCCGAGGCAGGAATTCACGCACGTCCGAGAAATGCGTGTGCATGTTTG
CCCCTACAAAGCCAGGGTGACCTGGGGCCTGGCCCTTCTCACGCCCTCCC
TCTCGCCCCCCCCCTCCCCCCCCCCTTGTTCTTAGTTCTTCGATGTGATA
ATCACTACAGTAATACGAGAACACTCAATGCTTAGATGGGACACAACTAC
TAATACGAGAACACTCCCATCTCCCACACGTGCGATTGTACCTCGTTCCA
ATTCATATGAAAGGCCCCCTCTCGCCCGCCCACCCACCCTCCCACCCGCC
AACCCACCCGCCCCGCCTGCCTGTCTGCCCGCCCCCCCATGCACAACAGG
AGTACTACGACCGCGAGATGATGAAGGTGGACGCGTACGTGGAGCATTTC
GAGCAGGAGCGGAGGGAGGAGATTGCGGCCAAGCTCCAGAGGCTGTGGCG
GTCGCACCGGTCCAGGGCCCAGTACCAGGAACAGAAGGAGATGATGATCA
AGAGGCAGCAGGTCTGTGTGGTATGCTTGGAAGTACCCGGCAGGACCAAT
TTACTGGCGTGTAGGGCAGTACCAGTACTCGTGTACTTGAATCGCGGGAG
TGGACTTGCACCACAAGCCCACACGTGTTGCGGATGATGATGATGATGCG
CGCTTCCGAGCTTGCGGGGCGGAACGGCGGTCGGTCGCTCCCACCACCAC
ACCGTCATCACCACCACCACCGATGCCGGCACAGCCTCCACACCCACCCC
CACCACCCCCCCCCCACCAGTGCCCCTACCACCAACTCAAGCACCATCAA
TACAGCAGTACAAGCTACAGCTGGCCAGCGATTCCGCGAGAAGGAGCAAA
GACAAGGATAATCGGGTCCAGTGCATGCACAGGAAACTCGTGCGAACATG
AGTACACACTACGACCACCGCCAGAACCGACACCACCACCACCACAACCA
CCACCCACTACTACTAGTAACAACAACAACAACAACAACAACAACAACAC
CGTCACCGCCACCACCACCATCACCACCACCACCACCACCACTACACCAC
CACCACCGCCACCACCACCACCACCACTACACCACCACCACTATCACCAC
CACCACCACCACCACCACTACATCACCACCACCACCGCCACCACCACCAC
CACCACCACCACCATCACCACCACTGCACCACCACCGCCACCGTCACCAC
CACCACCACACCACCACCACCACCACCACCACCACCACCACCATCACCAC
CACCACCACCACCATCACCACCACCACCACCACCACCACCACCGCCGCTA
CACCACCACCACCACTACACCACGACCCAGGCGGAGAATGAGATGCGAAA
GATGGCCCTGGACCGTGAGCGGGAGTTGCAGGCGTACAAGAAGGAGCTGT
CCAAGTGGTTCACGGAGCAGCGAGAGGAGGCCGAACGGAACCGCATGAAC
GAGGAGCAGACGGTCAAGGAGAAGTACAAGGTGAGGGAGGGAGGAGTGGG
GAGGGGGGGGGGGTGACCCACCCAAGGGACAGCCTTTCTTATGTGTTTTG
TGGCCGCTGCTACTACTGTCGTACTTCGAAGTGCTACTGCTACTACCTAC
TACAGTACTCGTACTACTACTATACTACTACTACTGCTGCTACCAGTACT
ACCAGTACTCTGTACAGTAGTGCGGCACTGTAGGGTCTGCTGTACTTGAG
AAGCACTTTTTATGTACGTAGAGTACTACAAGTACTGCAGTACTCAAGCA
CTTGGAAGTATGCTATATCGGTCAACGGTGTCTCGCCTACGGCAAGCGCA
GCAAAAGCGGTGCCGCTGCTGTGCGTGCCTGAAAAGCGAGCCCGCGTTTC
CAAGTGTCCCTACTCCTTGGACTTCAAGTATTTCACTTCCTCGAAGTACT
CGGTAGCACACAAGTACTTCGAAGTGAGAAACGTACACTTTCCAGTACGC
AAGTAAGAGACACGCACTGTCGAGCAAGTATGTGAGAGACACACGCTTTC
GAGTAAGTAACAGACACACACTTTCGAGTAAGTGAGTGAGAGACACACAC
CTTCGAGAAAGCAAGCAAGAGACACACACCTTCGAGTATGTAAGTGGGAG
ACACACACTTTCGAGCAAGTAAGTTAGAGACACACACTTTCGAGTATGTA
AGAGACACACGTTTTCGAGTAAGCAAGTGAGAGACACACACTTTCGAGCA
AGTAAGAGACACACTTTTGAGAAAGCAAGTGAGAGGCACACGCGTTTGAG
TAAGTAGGAGACACACACTTTCGAGTAAGTGAGTGAGAGCCACACGCTTT
TGAGTAAGTAAGAGACACACGCTTTCGAGTAAGTAAGAGACACACACTTT
CGAGTAGGTGAGTGAGACACACACACCTTCGAGCAAGTAAGTGAGAGACA
CACACTTTCGAGCAAGTAAGAGACACACTTTCGAGAAAGTCAGTGAGGGG
TACACACGTTCGAGTAAGCAGGAGACACACACTTTCGAGTAGGTGAGTGA
GAGACACGCACCTTCGAGTAAGTAAGTGAGAGACACACACTTTCGAGCAA
ATAAGTAAGAGATACACACACTTTCGAGCAAGTAAGTGAGAGGCACACGC
GTTCGAGTAAGTAATAGACACATGCTTTCGAGTAATTGAGTGAGAGACAC
ACACCTTCGAGCAAGTAGGTAAGAGGCACATACCTTCGAGTAAGTACGGG
AGAGACACATGCTTTCGAGTAAGTAAGAGACACACTCTTTTGAGTATGTG
CGCTGCGCTTAGAGAGACACAGACTTTCGAGTATGTAAGTAAGAGACACA
CAGCTTGGAGTAGGTATGTGAGAGACACGCTTTCTAGCAAGCAAGTAGGA
GACACACACCTTGGAGTAAGCAAGTGAGAGACACATGCTTTCTAGCAAGT
AAGTAGAGACACACACTTTAGAACAAATAAGTGAGAGACACATGCTTCCG
ATAAGTTAAGTGAGAGACACGCACTTATGAGTAAGTAAGTAAGAGACACA
CACTTTCGAGCAAGTAAGTGAGAGACACACACTTTTGAGTAAGGGAGTGA
AAGACAAACGCTTTCGAGCAAGCAAGTAAGAGACACACACTTTCGAGTAA
GCAAGTGAGAGACACACACCTTCGAGTAAGTAAGAGAGACACACTTTCGA
GTCAGTGTGTGAGAGATACACACGTTCGATTAAGTAAGTGAAAGACACAC
ACTTTCGATTAAGTGAGTGAGAGACACACACTTTCGAGTAAGTGAGTGAG
AGCCACACACTTTCGAGTATGTAAGTGAGAGAGACACATTTTCGAGTATG
AGACACACACTTTCGAGGAAGTGAGAGACACACGCTTTCGAGTAAGTACA
GCAAGCGAGAGACACACACTTTCGAGCACCAGGTACATTTGTACGGGTAT
GAGTACTGCGTTTGCGTGGTTCGTCGCCTGAGGACACGACTTGGCTGATG
TGCATGTCTTGCTGCAGTACTCATAGAGTACGCGTTCCAACACTGCAAGT
GTGAGGAAGTTTGTGGCCCCAACTGCCCTGCCACCCCCCAGAGTAACCCC
GGCCTTTGCCACCAACCCTCGCGAGCCTTGAAGGGGCAATCTCGGCCCCG
GCTTTGAACACCAAAGCGTGTGGTACAGTACACTGCCATACGCTGCTGCT
GCTACTACTGTACAATGAACCTTTGGAGCCTTGAGGGGGCAAGCTCGGCC
CGGGGTTTGCGTACAAAGCCACGTGAGCACATAGTCCACAGATGTGGTAC
AGTGCTGCTGAACTGTACACGCTGTGTGTACTGCTGTAGAGTAGAGGAGC
AGCGCACGTGGTACGAGTACCTACTCACGTGCGCTTTGAAAGTACCTACT
CAAGTACTGTGCAGTAGTGCGAATACCTCCTAAGTACCTACCTATATGAG
CTTCTGTACAGTAAACGGGCCACATGCTGCTGGAGCAAAAGCTAGCCTCA
GATATGAACTGCCACCAGACAGTGAGCGTGTTGTGGTGCCCCATCCCGGC
ACAAGGAAGGACCCGCCTCCATTGGCATTCTCAGCCAACCCCTCTCCCTT
CCCCGGGTGCCACGCGGCAGGTGGTCTTGTACCGGCGGCGGGAGAAGGAT
CGCCAGCTGGCGGAGAAGAAAAAGCGCAAGGAAATGGCAGACGAG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:310521..315665+

>mRNA_S-ischiensis_contig11.1997.1 ID=mRNA_S-ischiensis_contig11.1997.1|Name=mRNA_S-ischiensis_contig11.1997.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=828bp|location=Sequence derived from alignment at S-ischiensis_contig11:310521..315665+ (Schizocladia ischiensis KU_0333)
AGGAAGAGAGTGCGCGTCATCCTAGAGAGGAAGAGAGTGCGCGTCATCCT
AGAGGAGTACTACGACCGCGAGATGATGAAGGTGGACGCGTACGTGGAGC
ATTTCGAGCAGGAGCGGAGGGAGGAGATTGCGGCCAAGCTCCAGAGGCTG
TGGCGGTCGCACCGGTCCAGGGCCCAGTACCAGGAACAGAAGGAGATGAT
GATCAAGAGGCAGCAGGAGTACTACGACCGCGAGATGATGAAGGTGGACG
CGTACGTGGAGCATTTCGAGCAGGAGCGGAGGGAGGAGATTGCGGCCAAG
CTCCAGAGGCTGTGGCGGTCGCACCGGTCCAGGGCCCAGTACCAGGAACA
GAAGGAGATGATGATCAAGAGGCAGCAGGCGGAGAATGAGATGCGAAAGA
TGGCCCTGGACCGTGAGCGGGAGTTGCAGGCGTACAAGAAGGAGCTGTCC
AAGTGGTTCACGGAGCAGCGAGAGGAGGCCGAACGGAACCGCATGAACGA
GGAGCAGACGGTCAAGGAGAAGTACAAGGCGGAGAATGAGATGCGAAAGA
TGGCCCTGGACCGTGAGCGGGAGTTGCAGGCGTACAAGAAGGAGCTGTCC
AAGTGGTTCACGGAGCAGCGAGAGGAGGCCGAACGGAACCGCATGAACGA
GGAGCAGACGGTCAAGGAGAAGTACAAGGTGGTCTTGTACCGGCGGCGGG
AGAAGGATCGCCAGCTGGCGGAGAAGAAAAAGCGCAAGGAAATGGCAGAC
GAGGTGGTCTTGTACCGGCGGCGGGAGAAGGATCGCCAGCTGGCGGAGAA
GAAAAAGCGCAAGGAAATGGCAGACGAG
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