mRNA_S-ischiensis_contig11.1996.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1996.1
Unique NamemRNA_S-ischiensis_contig11.1996.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.1996.1 vs. uniprot
Match: A0A6H5JES2_9PHAE (Uncharacterized protein n=1 Tax=Ectocarpus sp. CCAP 1310/34 TaxID=867726 RepID=A0A6H5JES2_9PHAE)

HSP 1 Score: 94.0 bits (232), Expect = 5.750e-21
Identity = 40/61 (65.57%), Postives = 51/61 (83.61%), Query Frame = 2 
Query:    2 RWKALFLLQHMMDKEADRPLGSPPVRLAGGDRALYEQIFKTEPRKYLNNAQFLTTMRRVYG 184
            RWKALF L+ +M+ + DRPLG+PP+RLAGGD ALYEQ+F+ EPRK+++   FLT MRRVYG
Sbjct:  145 RWKALFALRTLMESKGDRPLGAPPIRLAGGDSALYEQMFRAEPRKHVSRPTFLTVMRRVYG 205
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BLAST of mRNA_S-ischiensis_contig11.1996.1 vs. uniprot
Match: D7FJ64_ECTSI (Uncharacterized protein n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D7FJ64_ECTSI)

HSP 1 Score: 91.7 bits (226), Expect = 3.650e-20
Identity = 40/61 (65.57%), Postives = 50/61 (81.97%), Query Frame = 2 
Query:    2 RWKALFLLQHMMDKEADRPLGSPPVRLAGGDRALYEQIFKTEPRKYLNNAQFLTTMRRVYG 184
            RWKALF L  +M+ + DRPLG PP+RLAGGDRALYEQ+F+ EPRK+++   FLT MRRV+G
Sbjct:  106 RWKALFALLTLMESKDDRPLGVPPIRLAGGDRALYEQMFRAEPRKHVSRPTFLTVMRRVFG 166
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BLAST of mRNA_S-ischiensis_contig11.1996.1 vs. uniprot
Match: A0A835Z3N8_9STRA (Uncharacterized protein n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A835Z3N8_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 1.400e-8
Identity = 27/61 (44.26%), Postives = 38/61 (62.30%), Query Frame = 2 
Query:    2 RWKALFLLQHMMDKEADRPLGSPPVRLAGGDRALYEQIFKTEPRKYLNNAQFLTTMRRVYG 184
            RW+ALF  + +++    R       R+AG D ALYEQ+F+ +PRKYL   ++L  MR VYG
Sbjct:   70 RWEALFAFKAVLEA---RTGAHAAARVAGADNALYEQLFRAQPRKYLQRTRYLAVMRVVYG 127
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1996.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 3
Match NameE-valueIdentityDescription
A0A6H5JES2_9PHAE5.750e-2165.57Uncharacterized protein n=1 Tax=Ectocarpus sp. CCA... [more]
D7FJ64_ECTSI3.650e-2065.57Uncharacterized protein n=1 Tax=Ectocarpus silicul... [more]
A0A835Z3N8_9STRA1.400e-844.26Uncharacterized protein n=1 Tax=Tribonema minus Ta... [more]
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:301113..302475 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size188
Cds size186
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815576.0509827-CDS-S-ischiensis_contig11:301112..3012081622815576.0509827-CDS-S-ischiensis_contig11:301112..301208Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 301113..301208 +
1695739780.2677717-CDS-S-ischiensis_contig11:301112..3012081695739780.2677717-CDS-S-ischiensis_contig11:301112..301208Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 301113..301208 +
1622815576.0623913-CDS-S-ischiensis_contig11:302384..3024741622815576.0623913-CDS-S-ischiensis_contig11:302384..302474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 302385..302474 +
1695739780.2808897-CDS-S-ischiensis_contig11:302384..3024741695739780.2808897-CDS-S-ischiensis_contig11:302384..302474Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 302385..302474 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1996.1prot_S-ischiensis_contig11.1996.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 301113..302474 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1996.1

>prot_S-ischiensis_contig11.1996.1 ID=prot_S-ischiensis_contig11.1996.1|Name=mRNA_S-ischiensis_contig11.1996.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=62bp
PLEGAVPAAAHDGQGGRPPPGFPARTASRGGQSTLRADLQDRAPQVPQQR
TVPDHHAACLWV
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mRNA from alignment at S-ischiensis_contig11:301113..302475+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1996.1 ID=mRNA_S-ischiensis_contig11.1996.1|Name=mRNA_S-ischiensis_contig11.1996.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1363bp|location=Sequence derived from alignment at S-ischiensis_contig11:301113..302475+ (Schizocladia ischiensis KU_0333)
CCGCTGGAAGGCGCTGTTCCTGCTGCAGCACATGATGGACAAGGAGGCCG
ACCGCCCCCTGGGTTCCCCGCCCGTACGGCTAGCCGGGGGGGACAGGTGA
GCCCACGGCCGGGGATGCCCTCGCCCAGCCCCCCAAACGTATCAAAAAGC
ACCAGTTTTAGTCCTGTTTTGGGACGAGCCTTTTGGCACGGGGCCTGGAA
CTCGCCGCATATCTACCCATCAAATGAAAAAGCACCAACCAGTTACCGCA
GCTTGAGCCCAACCCTAACCCTGGCCCCGATTGACACCGCAACCATAAAA
CATAATGAACAGGGCCCATAACCTGTCGAGGTACTGTCATCTCATGGTAA
CACGCTGTTCGTTAGCGCCGTTAGAGAGGGCAGTGGGGCAGGGGCCTGTG
CTGACAACGGCAGAAATAGCAGCATACCTAAGGTGTACAGTAATGAGGGG
ATCTACAGTAGAGACATCTCCCAGACCGAGAGTGCTACAAGGGGCTGTGA
CGAGTCTTGTATAGGGTACAAGAGGCCATGTGTGTCGTTTTATCATCATG
GATACCGATGTTCTGACTAACCATATATACGCCTGGTTCGGCCATGGTTG
CACAGAGTGTAGAGCTGCACAGGAGGTCTACCGCAAATCCTAAACCCATT
GTTCCCCTGGGGCGCCCGCCATGGGCACAGGGGAGACGCCTGGGGTCGCA
CACGTTTTTACGTGGTTTGAGGGATGCTTGCGATAGCAAAGGGAGCCGAC
AGGCTCATGGGTGCTATATGTAGGCCATCACATGCCCGCCACATACGCCC
CTCACTTGCCCCCCCCTTGCATGACCCTCAACTACCCCCACCCCTGCCCC
CCCCTTACAACTTGACCTCAACTACCCCCCTCCCCCTCCCTTGCGTGACC
TCAACTACCCCCACCCCGCCGGCGACGGTCCGGTCCCTCTTCACTTGGAC
ATTCACTTCCAAGTGCCTGTAGGTACGTATATAGTAGGAGTCTGGTACTT
GGTATGTACTTCATGTTGCTGCCGCCTGACCCTGGTGATGGTGCAGGGGC
ATTGCTCTGCTCCGAGTGCGAGGTGTACTACATGGCAGTGTACAGTAGTG
CATACAGTACAATACCAGTCACCCATGCGAGTCACGTTAAAATATCTTCT
TATGATTCCCTCCCTCGTCCACTGTTGCCCACCCGCGCCTGCCCCGCTGC
CCAATTTTTCTTTTTTGCGAGCCTTACCCACGTACACCCCCATTTTGCCC
CTCATTTCCCGGGCCGGTGCAGAGCACTCTACGAGCAGATCTTCAAGACC
GAGCCCCGCAAGTACCTCAACAACGCACAGTTCCTGACCACCATGCGGCG
TGTCTATGGGTTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:301113..302475+

>mRNA_S-ischiensis_contig11.1996.1 ID=mRNA_S-ischiensis_contig11.1996.1|Name=mRNA_S-ischiensis_contig11.1996.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=372bp|location=Sequence derived from alignment at S-ischiensis_contig11:301113..302475+ (Schizocladia ischiensis KU_0333)
CCGCTGGAAGGCGCTGTTCCTGCTGCAGCACATGATGGACAAGGAGGCCG
ACCGCCCCCTGGGTTCCCCGCCCGTACGGCTAGCCGGGGGGGACAGCCGC
TGGAAGGCGCTGTTCCTGCTGCAGCACATGATGGACAAGGAGGCCGACCG
CCCCCTGGGTTCCCCGCCCGTACGGCTAGCCGGGGGGGACAGAGCACTCT
ACGAGCAGATCTTCAAGACCGAGCCCCGCAAGTACCTCAACAACGCACAG
TTCCTGACCACCATGCGGCGTGTCTATGGGTTAGCACTCTACGAGCAGAT
CTTCAAGACCGAGCCCCGCAAGTACCTCAACAACGCACAGTTCCTGACCA
CCATGCGGCGTGTCTATGGGTT
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