mRNA_S-ischiensis_contig11.1995.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1995.1
Unique NamemRNA_S-ischiensis_contig11.1995.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1995.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
back to top
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:297221..297922 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size702
Cds size378
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1995.1prot_S-ischiensis_contig11.1995.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 297293..297670 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9694269-UTR-S-ischiensis_contig11:297220..2972921622815581.9694269-UTR-S-ischiensis_contig11:297220..297292Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 297221..297292 +
1695739783.9989095-UTR-S-ischiensis_contig11:297220..2972921695739783.9989095-UTR-S-ischiensis_contig11:297220..297292Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 297221..297292 +
1622815582.002517-UTR-S-ischiensis_contig11:297670..2979221622815582.002517-UTR-S-ischiensis_contig11:297670..297922Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 297671..297922 +
1695739784.0207465-UTR-S-ischiensis_contig11:297670..2979221695739784.0207465-UTR-S-ischiensis_contig11:297670..297922Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 297671..297922 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.9823723-CDS-S-ischiensis_contig11:297292..2976701622815581.9823723-CDS-S-ischiensis_contig11:297292..297670Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 297293..297670 +
1695739784.0102227-CDS-S-ischiensis_contig11:297292..2976701695739784.0102227-CDS-S-ischiensis_contig11:297292..297670Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 297293..297670 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1995.1

>prot_S-ischiensis_contig11.1995.1 ID=prot_S-ischiensis_contig11.1995.1|Name=mRNA_S-ischiensis_contig11.1995.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
MHASVRVQQSGLASPSHPGRALPRRSAHQFPKPFLNEIESHQFLWLLMRW
SQPAPGWYTQRLGAEGGCPYLSRLGREGCRDVQDDSGQANTWEVFPLKSS
TRSLLKIDRAANLNGYRPSKKPGHS*
back to top

mRNA from alignment at S-ischiensis_contig11:297221..297922+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1995.1 ID=mRNA_S-ischiensis_contig11.1995.1|Name=mRNA_S-ischiensis_contig11.1995.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=702bp|location=Sequence derived from alignment at S-ischiensis_contig11:297221..297922+ (Schizocladia ischiensis KU_0333)
CTGCTGCAATGCCTCGTCCACTACAGCAATGCACGCCAGTGTATATATAT
ATATATATATTCCACTACAGCAATGCACGCCAGTGTACGCGTGCAACAGA
GTGGGCTGGCCTCCCCCTCCCACCCTGGGCGGGCGCTTCCACGGCGAAGT
GCACACCAATTTCCCAAACCGTTTCTCAACGAAATCGAATCGCACCAATT
TTTGTGGTTGTTGATGAGGTGGTCCCAACCTGCGCCGGGTTGGTACACTC
AGCGACTTGGGGCGGAAGGTGGTTGTCCGTACCTTTCACGACTGGGGAGG
GAAGGTTGTAGGGATGTACAAGACGATTCGGGTCAGGCAAATACATGGGA
AGTTTTCCCACTAAAGTCAAGTACTCGTAGTCTACTAAAAATTGACCGGG
CCGCAAATCTTAACGGTTACCGCCCCTCAAAAAAGCCCGGTCACAGTTAA
AACATCTTATTTAATGAACTTAAGCCGTTTTGGCGGTGATCCCGTGGGAG
TCGTCGGTTGGGCCACTAAGCAAAGTTGATCAGCACCCCCAAAGTAGCCC
AGATACTATCAACGGCAGTCAGTTTGCAAACTACACCATCAATCCCCAAG
TGAAACACGAAATCGCCGAAGCCGCCCCTGGCTGTGCCGCGGCCACCTAA
ACGATAGCCAAGTTCCATCGTCTTGTTTTCAGCCAAAAATCGGCGCCGGC
AA
back to top

Coding sequence (CDS) from alignment at S-ischiensis_contig11:297221..297922+

>mRNA_S-ischiensis_contig11.1995.1 ID=mRNA_S-ischiensis_contig11.1995.1|Name=mRNA_S-ischiensis_contig11.1995.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=756bp|location=Sequence derived from alignment at S-ischiensis_contig11:297221..297922+ (Schizocladia ischiensis KU_0333)
ATGCACGCCAGTGTACGCGTGCAACAGAGTGGGCTGGCCTCCCCCTCCCA
CCCTGGGCGGGCGCTTCCACGGCGAAGTGCACACCAATTTCCCAAACCGT
TTCTCAACGAAATCGAATCGCACCAATTTTTGTGGTTGTTGATGAGGTGG
TCCCAACCTGCGCCGGGTTGGTACACTCAGCGACTTGGGGCGGAAGGTGG
TTGTCCGTACCTTTCACGACTGGGGAGGGAAGGTTGTAGGGATGTACAAG
ACGATTCGGGTCAGGCAAATACATGGGAAGTTTTCCCACTAAAGTCAAGT
ACTCGTAGTCTACTAAAAATTGACCGGGCCGCAAATCTTAACGGTTACCG
CCCCTCAAAAAAGCCCGGTCACAGTTAAATGCACGCCAGTGTACGCGTGC
AACAGAGTGGGCTGGCCTCCCCCTCCCACCCTGGGCGGGCGCTTCCACGG
CGAAGTGCACACCAATTTCCCAAACCGTTTCTCAACGAAATCGAATCGCA
CCAATTTTTGTGGTTGTTGATGAGGTGGTCCCAACCTGCGCCGGGTTGGT
ACACTCAGCGACTTGGGGCGGAAGGTGGTTGTCCGTACCTTTCACGACTG
GGGAGGGAAGGTTGTAGGGATGTACAAGACGATTCGGGTCAGGCAAATAC
ATGGGAAGTTTTCCCACTAAAGTCAAGTACTCGTAGTCTACTAAAAATTG
ACCGGGCCGCAAATCTTAACGGTTACCGCCCCTCAAAAAAGCCCGGTCAC
AGTTAA
back to top