mRNA_S-ischiensis_contig11.1993.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1993.1
Unique NamemRNA_S-ischiensis_contig11.1993.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1993.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:292270..292677 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categorymitochondrion
Exons1
Model size409
Cds size324
Stop1
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.8618157-CDS-S-ischiensis_contig11:292269..2925931622815581.8618157-CDS-S-ischiensis_contig11:292269..292593Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 292270..292593 +
1695739783.9422774-CDS-S-ischiensis_contig11:292269..2925931695739783.9422774-CDS-S-ischiensis_contig11:292269..292593Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 292270..292593 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.8728259-UTR-S-ischiensis_contig11:292593..2926771622815581.8728259-UTR-S-ischiensis_contig11:292593..292677Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 292594..292677 +
1695739783.9509964-UTR-S-ischiensis_contig11:292593..2926771695739783.9509964-UTR-S-ischiensis_contig11:292593..292677Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 292594..292677 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1993.1prot_S-ischiensis_contig11.1993.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 292270..292593 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1993.1

>prot_S-ischiensis_contig11.1993.1 ID=prot_S-ischiensis_contig11.1993.1|Name=mRNA_S-ischiensis_contig11.1993.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=108bp
TWRPASVAGVLHWTRPRAPPGGLSAPAPVNTVVLRSTSKCFEAQVRVRVC
DLAWRGWGAESHVAAGVANANFAGRLLSPPGAEANVLPAGPARRAQQAPD
ISTCFNQ*
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mRNA from alignment at S-ischiensis_contig11:292270..292677+

Legend: CDSpolypeptideUTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1993.1 ID=mRNA_S-ischiensis_contig11.1993.1|Name=mRNA_S-ischiensis_contig11.1993.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=408bp|location=Sequence derived from alignment at S-ischiensis_contig11:292270..292677+ (Schizocladia ischiensis KU_0333)
ACTTGGCGCCCGGCAAGTGTGGCAGGCGTTCTCCACTGGACGCGGCCCCG
GGCCCCCCCGGGGGGACTGTCTGCCCCAGCACCCGTAAATACTGTAGTAC
TTCGAAGTACTTCGAAGTGCTTTGAAGCACAAGTACGAGTACGAGTTTGT
GATTTGGCGTGGAGGGGGTGGGGGGCGGAGTCGCACGTGGCAGCAGGTGT
GGCCAATGCAAACTTTGCCGGCCGTTTGTTGTCGCCGCCGGGTGCAGAGG
CGAATGTTTTGCCGGCGGGCCCCGCGCGCCGTGCTCAACAGGCCCCGGAC
ATAAGTACGTGCTTCAATCAATAGAGTACTCTGCTCACATCCTTTGAAAT
CACTGTACTAGTTCACTGCAGTAGGTACCTGCTCACCGTCCTCTAGCCCT
CGCGCCAT
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:292270..292677+

>mRNA_S-ischiensis_contig11.1993.1 ID=mRNA_S-ischiensis_contig11.1993.1|Name=mRNA_S-ischiensis_contig11.1993.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=648bp|location=Sequence derived from alignment at S-ischiensis_contig11:292270..292677+ (Schizocladia ischiensis KU_0333)
ACTTGGCGCCCGGCAAGTGTGGCAGGCGTTCTCCACTGGACGCGGCCCCG
GGCCCCCCCGGGGGGACTGTCTGCCCCAGCACCCGTAAATACTGTAGTAC
TTCGAAGTACTTCGAAGTGCTTTGAAGCACAAGTACGAGTACGAGTTTGT
GATTTGGCGTGGAGGGGGTGGGGGGCGGAGTCGCACGTGGCAGCAGGTGT
GGCCAATGCAAACTTTGCCGGCCGTTTGTTGTCGCCGCCGGGTGCAGAGG
CGAATGTTTTGCCGGCGGGCCCCGCGCGCCGTGCTCAACAGGCCCCGGAC
ATAAGTACGTGCTTCAATCAATAGACTTGGCGCCCGGCAAGTGTGGCAGG
CGTTCTCCACTGGACGCGGCCCCGGGCCCCCCCGGGGGGACTGTCTGCCC
CAGCACCCGTAAATACTGTAGTACTTCGAAGTACTTCGAAGTGCTTTGAA
GCACAAGTACGAGTACGAGTTTGTGATTTGGCGTGGAGGGGGTGGGGGGC
GGAGTCGCACGTGGCAGCAGGTGTGGCCAATGCAAACTTTGCCGGCCGTT
TGTTGTCGCCGCCGGGTGCAGAGGCGAATGTTTTGCCGGCGGGCCCCGCG
CGCCGTGCTCAACAGGCCCCGGACATAAGTACGTGCTTCAATCAATAG
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