mRNA_S-ischiensis_contig11.1980.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1980.1
Unique NamemRNA_S-ischiensis_contig11.1980.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Match: A0A836CMS1_9STRA (Putative apoptosis-inducing factor 1 n=1 Tax=Tribonema minus TaxID=303371 RepID=A0A836CMS1_9STRA)

HSP 1 Score: 67.0 bits (162), Expect = 2.950e-11
Identity = 31/50 (62.00%), Postives = 37/50 (74.00%), Query Frame = 1 
Query:   37 HPLIYRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWVEGRRDDREGGR 186
            HP +Y HQP+F SH E LD++VEGVGELD+  RTVGIWV G     EGG+
Sbjct:  491 HPRLYMHQPTFRSHWEDLDILVEGVGELDASVRTVGIWVHG---GAEGGK 537
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BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Match: A0A5D6XFC0_9STRA (Uncharacterized protein n=1 Tax=Pythium brassicum TaxID=1485010 RepID=A0A5D6XFC0_9STRA)

HSP 1 Score: 64.3 bits (155), Expect = 2.630e-10
Identity = 26/38 (68.42%), Postives = 32/38 (84.21%), Query Frame = 1 
Query:   49 YRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWVEGR 162
            YRHQP F SHL GLDV++EG+GE+DS  RTVG+WV+ R
Sbjct:  493 YRHQPMFRSHLRGLDVVLEGIGEIDSSLRTVGVWVQPR 530
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BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Match: K3WXL9_GLOUD (Uncharacterized protein n=1 Tax=Globisporangium ultimum (strain ATCC 200006 / CBS 805.95 / DAOM BR144) TaxID=431595 RepID=K3WXL9_GLOUD)

HSP 1 Score: 62.4 bits (150), Expect = 1.240e-9
Identity = 23/38 (60.53%), Postives = 33/38 (86.84%), Query Frame = 1 
Query:   49 YRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWVEGR 162
            YRHQP F SHL+G+DV++EG+GE++S  RT+G+WV+ R
Sbjct:  383 YRHQPMFRSHLQGIDVVIEGIGEINSSLRTIGLWVQPR 420
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BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Match: A0A3F2RH58_9STRA (Uncharacterized protein n=3 Tax=Phytophthora kernoviae TaxID=325452 RepID=A0A3F2RH58_9STRA)

HSP 1 Score: 60.1 bits (144), Expect = 8.090e-9
Identity = 24/36 (66.67%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   49 YRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWVE 156
            YRHQP F SHL GL V++EG+GE+DS  RTVG+WV+
Sbjct:  378 YRHQPLFRSHLPGLGVLIEGIGEVDSSLRTVGVWVQ 413
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BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Match: A0A662YDM8_9STRA (Uncharacterized protein (Fragment) n=2 Tax=Nothophytophthora sp. Chile5 TaxID=2483409 RepID=A0A662YDM8_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 1.070e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   49 YRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWVE 156
            YRHQP F SHL G+ V++EG+GE+DS  RTVG+WV+
Sbjct:  113 YRHQPLFRSHLPGVGVLIEGIGEVDSSLRTVGVWVQ 148
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BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Match: H3GYI8_PHYRM (Uncharacterized protein n=6 Tax=Phytophthora TaxID=4783 RepID=H3GYI8_PHYRM)

HSP 1 Score: 58.9 bits (141), Expect = 2.070e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   49 YRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWVE 156
            YRHQP F SHL G+ V++EG+GE+DS  RTVG+WV+
Sbjct:  424 YRHQPLFRSHLPGVGVLIEGIGEVDSSLRTVGVWVQ 459
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BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Match: A0A3M6VHG2_9STRA (Uncharacterized protein n=2 Tax=Peronospora effusa TaxID=542832 RepID=A0A3M6VHG2_9STRA)

HSP 1 Score: 58.9 bits (141), Expect = 2.080e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   49 YRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWVE 156
            YRHQP F SHL G+ V++EG+GE+DS  RTVG+WV+
Sbjct:  441 YRHQPLFRSHLTGVGVLIEGIGEVDSSLRTVGVWVQ 476
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BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Match: D0P394_PHYIT (Apoptosis-inducing factor 1, putative n=15 Tax=Phytophthora TaxID=4783 RepID=D0P394_PHYIT)

HSP 1 Score: 58.9 bits (141), Expect = 2.080e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   49 YRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWVE 156
            YRHQP F SHL G+ V++EG+GE+DS  RTVG+WV+
Sbjct:  445 YRHQPLFRSHLPGVGVLIEGIGEVDSSLRTVGVWVQ 480
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BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Match: M4BZX1_HYAAE (Uncharacterized protein n=1 Tax=Hyaloperonospora arabidopsidis (strain Emoy2) TaxID=559515 RepID=M4BZX1_HYAAE)

HSP 1 Score: 58.5 bits (140), Expect = 2.840e-8
Identity = 23/36 (63.89%), Postives = 30/36 (83.33%), Query Frame = 1 
Query:   46 IYRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWV 153
            +YRHQP F SHL G+ V++EG+GE+DS  RTVG+WV
Sbjct:  453 VYRHQPLFRSHLPGVGVLMEGIGEVDSSLRTVGVWV 488
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BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Match: A0A1W0AAQ3_9STRA (Apoptosis-inducing factor 1 n=1 Tax=Thraustotheca clavata TaxID=74557 RepID=A0A1W0AAQ3_9STRA)

HSP 1 Score: 58.2 bits (139), Expect = 3.980e-8
Identity = 23/37 (62.16%), Postives = 30/37 (81.08%), Query Frame = 1 
Query:   46 IYRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWVE 156
            IYRHQP F SH+ G+ V  EG+G++DSR +TVGIW+E
Sbjct:  664 IYRHQPMFRSHMPGIGVTCEGIGDIDSRLQTVGIWLE 700
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1980.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 21
Match NameE-valueIdentityDescription
A0A836CMS1_9STRA2.950e-1162.00Putative apoptosis-inducing factor 1 n=1 Tax=Tribo... [more]
A0A5D6XFC0_9STRA2.630e-1068.42Uncharacterized protein n=1 Tax=Pythium brassicum ... [more]
K3WXL9_GLOUD1.240e-960.53Uncharacterized protein n=1 Tax=Globisporangium ul... [more]
A0A3F2RH58_9STRA8.090e-966.67Uncharacterized protein n=3 Tax=Phytophthora kerno... [more]
A0A662YDM8_9STRA1.070e-863.89Uncharacterized protein (Fragment) n=2 Tax=Nothoph... [more]
H3GYI8_PHYRM2.070e-863.89Uncharacterized protein n=6 Tax=Phytophthora TaxID... [more]
A0A3M6VHG2_9STRA2.080e-863.89Uncharacterized protein n=2 Tax=Peronospora effusa... [more]
D0P394_PHYIT2.080e-863.89Apoptosis-inducing factor 1, putative n=15 Tax=Phy... [more]
M4BZX1_HYAAE2.840e-863.89Uncharacterized protein n=1 Tax=Hyaloperonospora a... [more]
A0A1W0AAQ3_9STRA3.980e-862.16Apoptosis-inducing factor 1 n=1 Tax=Thraustotheca ... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:201721..202239 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score63.5
Seed ortholog evalue4.3e-08
Seed eggNOG ortholog42099.EPrPV00000021018
Preferred nameAIFM1
KEGG rclassRC00176
KEGG koko:K04727,ko:K17877
KEGG ReactionR00787,R00789
KEGG Pathwayko00910,ko01120,ko04210,ko04214,ko04217,map00910,map01120,map04210,map04214,map04217
KEGG ModuleM00531
GOsGO:0000166,GO:0000302,GO:0000737,GO:0001101,GO:0002931,GO:0003254,GO:0003674,GO:0003676,GO:0003677,GO:0003824,GO:0004174,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005740,GO:0005741,GO:0005743,GO:0005758,GO:0005829,GO:0006091,GO:0006119,GO:0006139,GO:0006163,GO:0006259,GO:0006308,GO:0006309,GO:0006323,GO:0006725,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0006915,GO:0006919,GO:0006921,GO:0006950,GO:0006952,GO:0006979,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0007275,GO:0007399,GO:0007584,GO:0008150,GO:0008152,GO:0008219,GO:0008637,GO:0009055,GO:0009056,GO:0009057,GO:0009117,GO:0009123,GO:0009126,GO:0009141,GO:0009144,GO:0009150,GO:0009161,GO:0009167,GO:0009199,GO:0009205,GO:0009259,GO:0009605,GO:0009607,GO:0009620,GO:0009628,GO:0009636,GO:0009719,GO:0009725,GO:0009893,GO:0009894,GO:0009987,GO:0009991,GO:0010033,GO:0010035,GO:0010243,GO:0010257,GO:0010604,GO:0010623,GO:0010941,GO:0010942,GO:0010950,GO:0010952,GO:0012501,GO:0014070,GO:0015980,GO:0016020,GO:0016043,GO:0016174,GO:0016310,GO:0016491,GO:0016645,GO:0016649,GO:0016651,GO:0017144,GO:0019219,GO:0019222,GO:0019439,GO:0019637,GO:0019693,GO:0019866,GO:0019867,GO:0019899,GO:0022008,GO:0022411,GO:0022607,GO:0022900,GO:0022904,GO:0023052,GO:0030154,GO:0030162,GO:0030182,GO:0030261,GO:0030262,GO:0031090,GO:0031323,GO:0031325,GO:0031329,GO:0031667,GO:0031668,GO:0031669,GO:0031960,GO:0031966,GO:0031967,GO:0031968,GO:0031970,GO:0031974,GO:0031975,GO:0032268,GO:0032270,GO:0032355,GO:0032368,GO:0032370,GO:0032409,GO:0032411,GO:0032501,GO:0032502,GO:0032870,GO:0032879,GO:0032981,GO:0033108,GO:0033554,GO:0033993,GO:0034599,GO:0034614,GO:0034622,GO:0034641,GO:0034655,GO:0034976,GO:0035556,GO:0035690,GO:0036094,GO:0036293,GO:0036294,GO:0042221,GO:0042391,GO:0042493,GO:0042542,GO:0042592,GO:0042773,GO:0042775,GO:0042981,GO:0043065,GO:0043067,GO:0043068,GO:0043085,GO:0043167,GO:0043168,GO:0043170,GO:0043200,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043233,GO:0043269,GO:0043270,GO:0043280,GO:0043281,GO:0043523,GO:0043525,GO:0043933,GO:0044070,GO:0044085,GO:0044093,GO:0044237,GO:0044238,GO:0044248,GO:0044260,GO:0044265,GO:0044270,GO:0044281,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0045862,GO:0046034,GO:0046483,GO:0046677,GO:0046700,GO:0048037,GO:0048468,GO:0048471,GO:0048518,GO:0048522,GO:0048545,GO:0048583,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0048878,GO:0050660,GO:0050662,GO:0050664,GO:0050789,GO:0050790,GO:0050794,GO:0050801,GO:0050832,GO:0050896,GO:0051049,GO:0051050,GO:0051052,GO:0051128,GO:0051130,GO:0051171,GO:0051173,GO:0051246,GO:0051247,GO:0051276,GO:0051336,GO:0051345,GO:0051385,GO:0051402,GO:0051704,GO:0051707,GO:0051716,GO:0051881,GO:0051900,GO:0052547,GO:0052548,GO:0055086,GO:0055114,GO:0060255,GO:0061024,GO:0065003,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0070059,GO:0070301,GO:0070482,GO:0070887,GO:0070997,GO:0071103,GO:0071236,GO:0071241,GO:0071310,GO:0071383,GO:0071384,GO:0071389,GO:0071392,GO:0071396,GO:0071407,GO:0071453,GO:0071495,GO:0071496,GO:0071704,GO:0071731,GO:0071732,GO:0071840,GO:0071949,GO:0072521,GO:0080090,GO:0080134,GO:0090304,GO:0090305,GO:0090649,GO:0090650,GO:0097035,GO:0097159,GO:0097190,GO:0097193,GO:0097194,GO:0097237,GO:0097305,GO:0097306,GO:0097366,GO:0098542,GO:0098588,GO:0098805,GO:0110096,GO:1900117,GO:1900119,GO:1900161,GO:1900163,GO:1901135,GO:1901214,GO:1901216,GO:1901265,GO:1901360,GO:1901361,GO:1901363,GO:1901564,GO:1901575,GO:1901654,GO:1901655,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1902065,GO:1902170,GO:1902510,GO:1902882,GO:1903624,GO:1903729,GO:1903793,GO:1904044,GO:1904045,GO:1905780,GO:1905782,GO:1905952,GO:1905954,GO:2000116,GO:2001056,GO:2001138,GO:2001140
EggNOG free text desc.Apoptosis-inducing factor 1. Source PGD
EggNOG OGs1MGB4@121069,COG0446@1,KOG1346@2759
EC1.7.1.4
COG Functional cat.T
Best tax levelPythiales
Best eggNOG OGNA|NA|NA
BRITEko00000,ko00001,ko00002,ko01000
Hectar predicted targeting categoryother localisation
Exons2
Model size222
Cds size204
Stop0
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1980.1prot_S-ischiensis_contig11.1980.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 201739..202239 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.1343617-UTR-S-ischiensis_contig11:201720..2017381622815587.1343617-UTR-S-ischiensis_contig11:201720..201738Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 201721..201738 +
1695739786.7499678-UTR-S-ischiensis_contig11:201720..2017381695739786.7499678-UTR-S-ischiensis_contig11:201720..201738Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 201721..201738 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815587.1468167-CDS-S-ischiensis_contig11:201738..2018371622815587.1468167-CDS-S-ischiensis_contig11:201738..201837Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 201739..201837 +
1695739786.7621078-CDS-S-ischiensis_contig11:201738..2018371695739786.7621078-CDS-S-ischiensis_contig11:201738..201837Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 201739..201837 +
1622815587.1570241-CDS-S-ischiensis_contig11:202134..2022391622815587.1570241-CDS-S-ischiensis_contig11:202134..202239Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 202135..202239 +
1695739786.7711186-CDS-S-ischiensis_contig11:202134..2022391695739786.7711186-CDS-S-ischiensis_contig11:202134..202239Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 202135..202239 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1980.1

>prot_S-ischiensis_contig11.1980.1 ID=prot_S-ischiensis_contig11.1980.1|Name=mRNA_S-ischiensis_contig11.1980.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=68bp
MAKELPHPLIYRHQPSFASHLEGLDVIVEGVGELDSRARTVGIWVEGRRD
DREGGRGPGSVAAAAATG
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mRNA from alignment at S-ischiensis_contig11:201721..202239+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1980.1 ID=mRNA_S-ischiensis_contig11.1980.1|Name=mRNA_S-ischiensis_contig11.1980.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=519bp|location=Sequence derived from alignment at S-ischiensis_contig11:201721..202239+ (Schizocladia ischiensis KU_0333)
AGCAGTGACCCGGCGTTGATGGCCAAGGAGCTGCCTCACCCGCTCATCTA
CCGCCACCAGCCCAGCTTCGCCAGCCATCTGGAGGGTCTAGACGTGATTG
TGGAGGGTGTTGGCGAGGTGAGAACCCGATGGCGGCACCGGCACCGGTGG
CAGCAGAGCCGGCACTGCGTGTGTGTCTGTTCTGTGTGTGTGTGTCTCTG
TGTGTGGGGGGGGCACACACGCCTTCCCTGCTATGTACTGCCCTACCTGT
CACCACCCCGCACCTTCCACCAGTGCATCTCCAGGGGCGGCACCGCCCGT
TCACGCCCACTGGGTTGCCATAAACAGCCGACCAATCCCCCTGCCGCACG
CACTGCTCGGCCTGGGTGTCCGTGCTGTTTGGCTGCCTGCCTATTTTCCC
TCTCACGCTCCCAGCTGGACTCGCGAGCTCGCACCGTGGGCATTTGGGTG
GAAGGGCGCAGGGACGACAGGGAGGGTGGTCGCGGCCCAGGATCGGTTGC
GGCAGCGGCAGCGACGGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:201721..202239+

>mRNA_S-ischiensis_contig11.1980.1 ID=mRNA_S-ischiensis_contig11.1980.1|Name=mRNA_S-ischiensis_contig11.1980.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=408bp|location=Sequence derived from alignment at S-ischiensis_contig11:201721..202239+ (Schizocladia ischiensis KU_0333)
ATGGCCAAGGAGCTGCCTCACCCGCTCATCTACCGCCACCAGCCCAGCTT
CGCCAGCCATCTGGAGGGTCTAGACGTGATTGTGGAGGGTGTTGGCGAGA
TGGCCAAGGAGCTGCCTCACCCGCTCATCTACCGCCACCAGCCCAGCTTC
GCCAGCCATCTGGAGGGTCTAGACGTGATTGTGGAGGGTGTTGGCGAGCT
GGACTCGCGAGCTCGCACCGTGGGCATTTGGGTGGAAGGGCGCAGGGACG
ACAGGGAGGGTGGTCGCGGCCCAGGATCGGTTGCGGCAGCGGCAGCGACG
GGGCTGGACTCGCGAGCTCGCACCGTGGGCATTTGGGTGGAAGGGCGCAG
GGACGACAGGGAGGGTGGTCGCGGCCCAGGATCGGTTGCGGCAGCGGCAG
CGACGGGG
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