mRNA_S-ischiensis_contig11.1967.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1967.1
Unique NamemRNA_S-ischiensis_contig11.1967.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1967.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:93358..94890 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size334
Cds size330
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1967.1prot_S-ischiensis_contig11.1967.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 93360..94890 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.7319493-CDS-S-ischiensis_contig11:93359..935531622815575.7319493-CDS-S-ischiensis_contig11:93359..93553Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 93360..93553 -
1695739780.040894-CDS-S-ischiensis_contig11:93359..935531695739780.040894-CDS-S-ischiensis_contig11:93359..93553Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 93360..93553 -
1622815575.742422-CDS-S-ischiensis_contig11:94428..945371622815575.742422-CDS-S-ischiensis_contig11:94428..94537Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 94429..94537 -
1695739780.0540204-CDS-S-ischiensis_contig11:94428..945371695739780.0540204-CDS-S-ischiensis_contig11:94428..94537Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 94429..94537 -
1622815575.7540464-CDS-S-ischiensis_contig11:94863..948901622815575.7540464-CDS-S-ischiensis_contig11:94863..94890Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 94864..94890 -
1695739780.1023018-CDS-S-ischiensis_contig11:94863..948901695739780.1023018-CDS-S-ischiensis_contig11:94863..94890Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 94864..94890 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1967.1

>prot_S-ischiensis_contig11.1967.1 ID=prot_S-ischiensis_contig11.1967.1|Name=mRNA_S-ischiensis_contig11.1967.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=110bp
KGDKSDFYSDASEEEEEEEEVWRDPEVREVVRGSGTEHAGRHGASEGKQQ
GNSSGGGSGDEDYYGGDNNSDVGDNAVICRGMAAVGPAAGMRRPRNPDRG
QGRASGAGGG
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mRNA from alignment at S-ischiensis_contig11:93358..94890-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1967.1 ID=mRNA_S-ischiensis_contig11.1967.1|Name=mRNA_S-ischiensis_contig11.1967.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=1533bp|location=Sequence derived from alignment at S-ischiensis_contig11:93358..94890- (Schizocladia ischiensis KU_0333)
AAGGGCGACAAGTCGGACTTCTACTCGGTGAGGTCGCGGGGGAGGGGCTT
CACGGGGGGGGTTCGAAGCCTGATAGGGGCGGCTTGGGCTACACCTCCCA
CTTGCATGCAACGGAAGCGAGGGCGTTGCCACCCGGTTTCTTTAGGCGTC
CAAATTGGTCGGCCATGTGCATGTGCCCTGCGTGCGTTTATGGGCCAAGG
GGACCCAAAGACAACGCTATTCAGAGAGTCCCCTCTACCCAGGTTGGCCC
CAAGTCCCCCCCCCACGACGCATTCACACACACACACACACACACACACA
CACACACACACACACACACACACACACACACACACACACGTCCCTGGCCA
CAGGACGCGTCCGAGGAGGAGGAGGAGGAGGAGGAGGTCTGGCGCGACCC
AGAGGTCAGAGAGGTCGTCAGGGGCAGCGGGACAGAGCATGCTGGAAGGC
ATGGGGCATCAGGTAGGCTAAGCTTAGGCTAGGGTTGGGGATGGGGGCCG
CCCCCGCTCCTTGAGGGGCCGGTCAGCCATAGTGGCGGTCCCAGACACTG
CTGCAGCCCGTGCCGTTGTGTGTGCAGGCGGGCCTGGCTAGCGTGGAGGC
AGCCACCGACCCTCACCAGGGAATACCTGTGATTACCTGCTTTCTGTGCT
ATCTTACGATCTCTGTGCTGTTACTTCGAAGTATGCGCGGATTGCTCATG
ACCGCAAAGACCGGTGTACTGTACACGTGTCGCTGAACGCGGACCGGTCC
AAGAATGTGCCTTGCCGTTGTTGGGGTCTATTGGGAACGACACTTCTATG
TAGCCACACGGACCTGACCACGATTGGTGCTGGCTACTCTGAAGCCACTT
CGTCTGGTGCATGAATGTTCTACTTCGAAGTAGCAGTGTTTCTGTGCTGC
ATAGTATGCCATTGGCGGGCTGGGAACAGGCCCCCTCTGTTGCCTCACTT
GACGTTCACACCAGCAGCAACCAGCAGCTCAGCAGAATACAGCGCAGCAA
TGAAGTTAGTAGCAGTATGCAGTAGCGTAGTAGTAGTAGTAGTTAGTAGT
ACAGTGGTGGTGGTGGTGGTAGTCTAGGAGTAGTACTTCAAAGTGGCATT
ACTAGTGCTGAAGTTGTGTTGTTGTTGTTGTTGTTGTGTTTGTAGTAGTA
GTAGTCGTAGTAGTAGTCATAGTCGTTCAGTAGTACTTCGAAGTGTGTAG
TATTAACAGGAACAACAGAGGGCGAGGTGTAGTAGTTGCAGCCAAACAAT
TCACCTGTACTTACCCTGGCACCTCCCACCCCCGGCTGTCCGGCCATTTC
CTCTCCTAACTGACCCTGCTACGCTCGTGTCACTCAGAAGGCAAGCAGCA
AGGCAACAGCAGCGGCGGTGGCAGCGGCGATGAAGATTACTATGGCGGTG
ACAACAACTCGGACGTTGGTGACAATGCCGTGATTTGCCGAGGGATGGCC
GCCGTAGGGCCCGCCGCCGGCATGCGGAGGCCTCGGAACCCAGACAGAGG
CCAAGGCCGCGCCAGCGGCGCCGGGGGAGGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:93358..94890-

>mRNA_S-ischiensis_contig11.1967.1 ID=mRNA_S-ischiensis_contig11.1967.1|Name=mRNA_S-ischiensis_contig11.1967.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=660bp|location=Sequence derived from alignment at S-ischiensis_contig11:93358..94890- (Schizocladia ischiensis KU_0333)
AAGGGCGACAAGTCGGACTTCTACTCGAAGGGCGACAAGTCGGACTTCTA
CTCGGACGCGTCCGAGGAGGAGGAGGAGGAGGAGGAGGTCTGGCGCGACC
CAGAGGTCAGAGAGGTCGTCAGGGGCAGCGGGACAGAGCATGCTGGAAGG
CATGGGGCATCAGGACGCGTCCGAGGAGGAGGAGGAGGAGGAGGAGGTCT
GGCGCGACCCAGAGGTCAGAGAGGTCGTCAGGGGCAGCGGGACAGAGCAT
GCTGGAAGGCATGGGGCATCAGAAGGCAAGCAGCAAGGCAACAGCAGCGG
CGGTGGCAGCGGCGATGAAGATTACTATGGCGGTGACAACAACTCGGACG
TTGGTGACAATGCCGTGATTTGCCGAGGGATGGCCGCCGTAGGGCCCGCC
GCCGGCATGCGGAGGCCTCGGAACCCAGACAGAGGCCAAGGCCGCGCCAG
CGGCGCCGGGGGAGGGAAGGCAAGCAGCAAGGCAACAGCAGCGGCGGTGG
CAGCGGCGATGAAGATTACTATGGCGGTGACAACAACTCGGACGTTGGTG
ACAATGCCGTGATTTGCCGAGGGATGGCCGCCGTAGGGCCCGCCGCCGGC
ATGCGGAGGCCTCGGAACCCAGACAGAGGCCAAGGCCGCGCCAGCGGCGC
CGGGGGAGGG
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