mRNA_S-ischiensis_contig11.1965.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1965.1
Unique NamemRNA_S-ischiensis_contig11.1965.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
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BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Match: D8LMU2_ECTSI (Ribosomal protein L11 methyltransferase n=1 Tax=Ectocarpus siliculosus TaxID=2880 RepID=D8LMU2_ECTSI)

HSP 1 Score: 246 bits (627), Expect = 1.910e-74
Identity = 121/228 (53.07%), Postives = 163/228 (71.49%), Query Frame = 2 
Query:    5 GFKTVLCGRLQVVPVQRLEE---AGEGLQQIRILEGDGWGNGEHPTTKMCLDFLDEVMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTHAVENFRLNGLQVPGQVTATHTRFILPGELKGNVVVANILVGALKRLLPVLVLAVEEGGLLCLSGFRRADMPVLKREYGMYMDWDDGMETSGSHPVWGEWMRIVGRPKPGMR--EDMKEEIEASLSEVAVS 673
            GF TV   RLQ+  VQR EE   +  GL+ +++LEG GWG+GEHP+T MCLDFL+  + GGEEVVDYG GSGVL   A++LGA+HVTA+DID +IL HA +NF LNG+    +V   H R +  G+L   +VVAN++ G ++R +  LVLAV+EGGLLCLSG R +D P+++ E+G YMDWD G+E S   P WGE++R+VGR KPG+     ++ E+E +LSE AV+
Sbjct:  294 GFDTVTMRRLQISAVQRREEQVPSSRGLRSVKLLEGQGWGDGEHPSTWMCLDFLESAVEGGEEVVDYGTGSGVLAAAAVVLGAKHVTAIDIDVEILAHARQNFLLNGISE--KVLVLHGREVSIGDLSAEIVVANMIAGPMRRQMAALVLAVKEGGLLCLSGLRPSDAPLIRSEFGKYMDWDVGLEASRESPTWGEYVRLVGRSKPGLALGGGLRAELERALSEAAVA 519
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BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Match: W7TLY7_9STRA (Ribosomal protein l11 methyltransferase n=2 Tax=Monodopsidaceae TaxID=425072 RepID=W7TLY7_9STRA)

HSP 1 Score: 162 bits (411), Expect = 1.800e-43
Identity = 102/245 (41.63%), Postives = 137/245 (55.92%), Query Frame = 2 
Query:    5 GFKTVLCGRLQVVPVQRLEEAG-------------EGLQQIRILEGDGWGNGEHPTTKMCLDFLDE--VMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTHAVENFRLNGLQVPGQVTATHTRFILPGELKGNVVVANI-LVGALKRLLPVLVLAVEEGGLLCLSGFRRADMPVLKREYGMYMDWDDGMETSGS--HPVWGE----WMRIVGRPKPGMREDMKEEIEASLSEVAVS 673
            GF  V  GR QVVPVQ   E                G  Q+RIL G+GWG+G HPTT +CLDFL +  ++ GGE VVDYGCGSG+L++ A+ LGAR    +D+  D L  A  N RLNG++   +V   H R ++PG+           LVG L  +   ++ AV EGG L LSG R   + V+KR+YG ++ WD+ +E +    +P +G     W+R+VGR   G R      +EA LSE AVS
Sbjct:  187 GFPPVNVGRFQVVPVQTYYELPLRPQDSYQPSQPPRGTHQVRILPGEGWGDGHHPTTMLCLDFLSQEGIVCGGERVVDYGCGSGILSIAAVQLGAREAVGIDVCYDALASATTNVRLNGVEQ--EVELLHPREVVPGDXXXXXXXXXXXLVGTLMAMSNTILGAVREGGWLVLSGLRPEQVEVIKRKYGDHVRWDESLERAEEVENPTFGTGAGLWVRLVGRRVLGDRW-----VEA-LSEAAVS 423
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BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Match: A0A0G4EHK7_VITBC (Uncharacterized protein n=2 Tax=Vitrella brassicaformis TaxID=1169539 RepID=A0A0G4EHK7_VITBC)

HSP 1 Score: 158 bits (399), Expect = 1.990e-42
Identity = 92/206 (44.66%), Postives = 125/206 (60.68%), Query Frame = 2 
Query:   68 GEGLQQIRILEGDGWGNGEHPTTKMCLDFLDEVMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTHAVENFRLNGLQVPGQVTATHTRFILPGE--LKGNV--VVANILVGALKRLLPVLVLAVEEGGLLCLSGFRRADMPVLKREYGMYMDWDDGMETSGSHPVWGEWMRIVGRPKPGMREDMKEEIEASLSEVAVS 673
            G  LQ I +   DGWG G HP+T++C++FL+  +  G+ V+DYG GS +L+V A  LGA HV  VDID DILT+A EN RLNG  V G V   HTR ++ G+  + G     VANILVG LKRL P L  AV   G LCLSG R + +  + + Y ++ D+D     +G H V+GEW  +VGR +     + +E     +S++AVS
Sbjct:  146 GGQLQDIHLRLHDGWGTGAHPSTRLCMEFLERRVRRGDAVLDYGVGSAILSVAAAKLGASHVLGVDIDDDILTNARENCRLNG--VDGCVELMHTREVVTGDTAISGRFDGCVANILVGPLKRLAPALGDAVRADGWLCLSGVRPSQVDDVMQAYNVFYDFDHKAVRTGVHDVYGEWACVVGRRRERGEGEARER--EYMSDLAVS 347
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BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Match: A0A7S3RWI1_EMIHU (Hypothetical protein n=2 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RWI1_EMIHU)

HSP 1 Score: 149 bits (375), Expect = 1.800e-39
Identity = 88/197 (44.67%), Postives = 113/197 (57.36%), Query Frame = 2 
Query:  110 WGNGEHPTTKMCLDFLDEVMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTHAVENFRLNGLQVPGQVTATHTRFILPGEL--KGNVVVANILVGALKRLLPVLVLAVE--EGGLLCLSGFRRADMPVLKREYGMYMDWDDGMETS-----GSHPVWGEWMRIVGRPKPGMREDMKEEIEASLSEVAVS 673
            WG G HPTT++CL++L + + GGE V+D+GCGSGVL  GA+ LGA   TAVD+D + L  A  N  LNG++   ++   H R ++PG L    +VVVANILVG L R   V  L      GGLLCLSG R  ++  LK  YG +++W+D M        G    WG W R+VGR           E  A LSE AVS
Sbjct:  103 WGTGCHPTTRLCLEWLSDAIQGGEHVLDFGCGSGVLAAGALALGASKATAVDVDAEALVVAAANLELNGVEQRAELL--HVREVVPGGLVPPADVVVANILVGQLVRPSMVCSLCANLAPGGLLCLSGVRPHEIGSLKEAYGTWVEWEDWMYAEADPGVGGEAYWGTWARLVGR------RVATPEQTAMLSEHAVS 291
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BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Match: A0A7S3RWB4_EMIHU (Hypothetical protein n=1 Tax=Emiliania huxleyi TaxID=2903 RepID=A0A7S3RWB4_EMIHU)

HSP 1 Score: 149 bits (375), Expect = 2.080e-38
Identity = 88/197 (44.67%), Postives = 113/197 (57.36%), Query Frame = 2 
Query:  110 WGNGEHPTTKMCLDFLDEVMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTHAVENFRLNGLQVPGQVTATHTRFILPGEL--KGNVVVANILVGALKRLLPVLVLAVE--EGGLLCLSGFRRADMPVLKREYGMYMDWDDGMETS-----GSHPVWGEWMRIVGRPKPGMREDMKEEIEASLSEVAVS 673
            WG G HPTT++CL++L + + GGE V+D+GCGSGVL  GA+ LGA   TAVD+D + L  A  N  LNG++   ++   H R ++PG L    +VVVANILVG L R   V  L      GGLLCLSG R  ++  LK  YG +++W+D M        G    WG W R+VGR           E  A LSE AVS
Sbjct:  213 WGTGCHPTTRLCLEWLSDAIQGGEHVLDFGCGSGVLAAGALALGASKATAVDVDAEALVVAAANLELNGVEQRAELL--HVREVVPGGLVPPADVVVANILVGQLVRPSMVCSLCANLAPGGLLCLSGVRPHEIGSLKEAYGTWVEWEDWMYAEADPGVGGEAYWGTWARLVGR------RVATPEQTAMLSEHAVS 401
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BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Match: A0A1Z5J7T9_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5J7T9_FISSO)

HSP 1 Score: 135 bits (341), Expect = 3.280e-34
Identity = 89/217 (41.01%), Postives = 125/217 (57.60%), Query Frame = 2 
Query:   77 LQQIRILEG-DGWGNGEHPTTKMCLDFLDEVMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTHAVENFRLNGLQVPGQVTATHTRFILPGEL---KG-NVVVANILVGALKR--LLPVLVLAVEEGGLLCLSGFRRADMPVLKREYGMYMDWDD-------GMETSGSHPVWG----EWMRIVGRPKPGMREDMKEEIEASLSEVAVS 673
            ++ I +L G +GWG G HPTT++CL++L E + GGE V+DYGCGSG+L++ A+ +GA     VDI+ + L  A  N  LN      +    HTR ILP E+   +G +V +ANIL+G L R  ++  LV  +   G+LCLSG R  ++  LK  YG  ++W D         ET GS   +G     W R+VGR +     D K EIE  +SE+AVS
Sbjct:  105 IRSIYLLMGRNGWGTGVHPTTRLCLEWLCEQIQGGEIVLDYGCGSGILSIAALHMGAARCVGVDIEAEALITAERNVALNEYD-SSRFEGLHTREILPYEIVPGRGVDVCIANILIGQLVRPSMVAALVSNIRNNGILCLSGIRPHEVASLKAAYGESIEWIDDHYAELSAEETEGSLASYGFDCGRWSRLVGRKRAA---DDKSEIER-MSELAVS 316
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BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Match: A0A7S0PHK8_9STRA (Hypothetical protein n=1 Tax=Leptocylindrus aporus TaxID=1398097 RepID=A0A7S0PHK8_9STRA)

HSP 1 Score: 134 bits (337), Expect = 4.230e-34
Identity = 83/238 (34.87%), Postives = 129/238 (54.20%), Query Frame = 2 
Query:   17 VLCGRLQVVPVQRLEEAGEGLQQIRIL---EGDGWGNGEHPTTKMCLDFLDEVMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTHAVENFRLNGLQVPGQVTATHTRFILPGELKG---NVVVANILVGALKR--LLPVLVLAVEEGGLLCLSGFRRADMPVLKREYGMYMDWDD-------GMETSGSHPVWG----EWMRIVGRPKPGMREDMKEEIEASLSEVAVS 673
            V+  ++ V+PV    E    +  IR+L   +  GWG G HPTT +CL++L +++ GGE ++DYGCGSG+L++  +  GA     VD++ + L  + +N  LNG     +    H R I+P  L+    N+ VANIL+G L R  ++  +V  +  G  LCLSG R A++  LK+ Y  ++DW D         +T GS   +G     W R+VG+ K G  +        ++SE+AVS
Sbjct:   40 VIADKVHVLPVNSKVEPRGDIVPIRLLLSGKNGGWGTGVHPTTVLCLEWLGDIIVGGESILDYGCGSGILSIAGLGFGAATSVGVDVEAEALVTSEKNLELNGYG--DRFEGRHVREIVPNCLRSPGANICVANILIGQLVRPSMVSAIVTNLAPGAYLCLSGIRPAEVESLKQAYEEHIDWIDDYYGELAAKDTEGSIDSYGFDCGTWSRVVGKLKSGGVDSR------AMSELAVS 269
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BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Match: A0A1Z5JW13_FISSO (Uncharacterized protein n=1 Tax=Fistulifera solaris TaxID=1519565 RepID=A0A1Z5JW13_FISSO)

HSP 1 Score: 132 bits (332), Expect = 4.360e-34
Identity = 87/207 (42.03%), Postives = 119/207 (57.49%), Query Frame = 2 
Query:  104 DGWGNGEHPTTKMCLDFLDEVMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTHAVENFRLNGLQVPGQVTATHTRFILPGEL---KG-NVVVANILVGALKR--LLPVLVLAVEEGGLLCLSGFRRADMPVLKREYGMYMDWDDGM-------ETSGSHPVWG----EWMRIVGRPKPGMREDMKEEIEASLSEVAVS 673
            +GWG G HPTT++CL++L E + GGE V+DYGCGSG+L++ A+ +GA     VDI+ + L  A  N  LN      +    HTR ILP E+   +G +V +ANIL+G L R  ++  LV  + + GLL LSG R  ++  LK  YG  M+W D         ET GS   +G     W R+VGR +     D K EIE  +SE+AVS
Sbjct:    4 NGWGTGVHPTTRLCLEWLCEQIQGGEVVLDYGCGSGILSIAALHMGAARCIGVDIEAEALITAERNVALNEYD-SSRFEGLHTREILPYEIVPGRGVDVCIANILIGQLVRPSMVAALVSNIRDDGLLGLSGIRPHEVDSLKAAYGESMEWMDDQYAELSAEETEGSLASYGFDCGRWSRLVGRKRAA---DGKSEIER-MSELAVS 205
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BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Match: A0A7S0C0F9_9STRA (Hypothetical protein n=1 Tax=Proboscia inermis TaxID=420281 RepID=A0A7S0C0F9_9STRA)

HSP 1 Score: 131 bits (329), Expect = 3.790e-32
Identity = 85/236 (36.02%), Postives = 129/236 (54.66%), Query Frame = 2 
Query:   17 VLCGRLQVVPVQRL---EEAGEGLQQIRILEG-DGWGNGEHPTTKMCLDFL--DEVMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTHAVENFRLNGLQVPGQVTATHTRFILPGELK---GNVVVANILVGALKR--LLPVLVLAVEEGGLLCLSGFRRADMPVLKREYGMYMDWDD-------GMETSGSHPVWG----EWMRIVGRPKPGMREDMKEEIEASLS 658
            ++  + +V+P       E  GE L  IR+L G +GWG G HPTT +CL +L  D V+ GGE ++DYGCGSG+L +  + LGA  V  VD++ + L  +  N  LN  +   +    HTR ++P  L+    ++ +ANIL+G L R  ++  +V  +  G LLCLSG R  ++  LK  YG + DW D        ++T GS   +G    +W R+VGR K     D++   E ++S
Sbjct:  118 IIANKFRVLPSTATIENENDGELLYPIRLLLGQNGWGTGVHPTTTLCLKWLTLDHVVQGGERILDYGCGSGILGIAGLNLGASSVVGVDVEAEALITSERNMELN--EFADRFEGLHTREVVPYCLRRPGADICLANILIGQLVRPSMISAIVTNLAPGALLCLSGIRPHEVGSLKTVYGDFFDWIDDDYEEMAAVDTVGSLESYGFDVGDWARLVGRLKSTGGIDIETMSEGAVS 351
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BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Match: B5Y5I9_PHATC (Predicted protein n=1 Tax=Phaeodactylum tricornutum (strain CCAP 1055/1) TaxID=556484 RepID=B5Y5I9_PHATC)

HSP 1 Score: 127 bits (319), Expect = 4.210e-31
Identity = 85/225 (37.78%), Postives = 121/225 (53.78%), Query Frame = 2 
Query:   71 EGLQQIRILEG-DGWGNGEHPTTKMCLDFLDEVMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTHAVENFRLNGLQVPGQVTATHTRFILPGELKGN----------VVVANILVGALKR--LLPVLVLAVEEGGLLCLSGFRRADMPVLKREYGMYMDWDDGM-------ETSGSHPVWG----EWMRIVGRPKPGMREDMKEEIEASLSEVAVS 673
            +G   +R+L G +GWG G HPTT++CLD++ + +  G  V+DYGCGSG+L+V A+  GAR    VD++ + L  A  N ++NG          H R +LP  L  +          VVVANIL+G L R  ++  +V  +  GGL+CLSG R  ++  LK  YG +M+W D          T GS   +G     W R+VGR       D   +IE  +SE+AVS
Sbjct:   86 DGYFPVRLLLGRNGWGTGVHPTTRLCLDWICQTVQNGNVVLDYGCGSGILSVAALHNGARRCIGVDVEAEALVTASRNVQINGFD-DSTFAGLHVREVLPYGLTTSNTDNDGVGVDVVVANILIGQLVRPSMVAAIVTNLAPGGLVCLSGIRPHEVDSLKVAYGEHMEWLDCQYAELSADATPGSLQSYGFDCGRWSRLVGRKTSS---DRGGDIER-MSELAVS 305
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1965.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 25
Match NameE-valueIdentityDescription
D8LMU2_ECTSI1.910e-7453.07Ribosomal protein L11 methyltransferase n=1 Tax=Ec... [more]
W7TLY7_9STRA1.800e-4341.63Ribosomal protein l11 methyltransferase n=2 Tax=Mo... [more]
A0A0G4EHK7_VITBC1.990e-4244.66Uncharacterized protein n=2 Tax=Vitrella brassicaf... [more]
A0A7S3RWI1_EMIHU1.800e-3944.67Hypothetical protein n=2 Tax=Emiliania huxleyi Tax... [more]
A0A7S3RWB4_EMIHU2.080e-3844.67Hypothetical protein n=1 Tax=Emiliania huxleyi Tax... [more]
A0A1Z5J7T9_FISSO3.280e-3441.01Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S0PHK8_9STRA4.230e-3434.87Hypothetical protein n=1 Tax=Leptocylindrus aporus... [more]
A0A1Z5JW13_FISSO4.360e-3442.03Uncharacterized protein n=1 Tax=Fistulifera solari... [more]
A0A7S0C0F9_9STRA3.790e-3236.02Hypothetical protein n=1 Tax=Proboscia inermis Tax... [more]
B5Y5I9_PHATC4.210e-3137.78Predicted protein n=1 Tax=Phaeodactylum tricornutu... [more]

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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:85754..90684 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Taxonomic scopeEukaryota
Seed ortholog score196.8
Seed ortholog evalue8.5e-48
Seed eggNOG ortholog2880.D8LMU2
EggNOG free text desc.Ribosomal protein L11 methyltransferase (PrmA)
EggNOG OGs2S89S@2759,COG2264@1
COG Functional cat.J
Best tax levelEukaryota
Best eggNOG OGNA|NA|NA
Hectar predicted targeting categoryother localisation
Ec32 ortholog descriptionRibosomal L11 methyltransferase, PrmA
Ec32 orthologEc-02_003650.1
Exons7
Model size884
Cds size537
Stop1
Start1
Relationships

The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.8516464-UTR-S-ischiensis_contig11:85753..858531622815585.8516464-UTR-S-ischiensis_contig11:85753..85853Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 85754..85853 +
1695739785.6874125-UTR-S-ischiensis_contig11:85753..858531695739785.6874125-UTR-S-ischiensis_contig11:85753..85853Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 85754..85853 +
1622815585.8675535-UTR-S-ischiensis_contig11:86135..861741622815585.8675535-UTR-S-ischiensis_contig11:86135..86174Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 86136..86174 +
1695739785.7001226-UTR-S-ischiensis_contig11:86135..861741695739785.7001226-UTR-S-ischiensis_contig11:86135..86174Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 86136..86174 +
1622815585.9618957-UTR-S-ischiensis_contig11:90476..906841622815585.9618957-UTR-S-ischiensis_contig11:90476..90684Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 90477..90684 +
1695739785.7799788-UTR-S-ischiensis_contig11:90476..906841695739785.7799788-UTR-S-ischiensis_contig11:90476..90684Schizocladia ischiensis KU_0333UTRS-ischiensis_contig11 90477..90684 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815585.881096-CDS-S-ischiensis_contig11:86174..862081622815585.881096-CDS-S-ischiensis_contig11:86174..86208Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 86175..86208 +
1695739785.7125435-CDS-S-ischiensis_contig11:86174..862081695739785.7125435-CDS-S-ischiensis_contig11:86174..86208Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 86175..86208 +
1622815585.8924763-CDS-S-ischiensis_contig11:86930..870641622815585.8924763-CDS-S-ischiensis_contig11:86930..87064Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 86931..87064 +
1695739785.7248526-CDS-S-ischiensis_contig11:86930..870641695739785.7248526-CDS-S-ischiensis_contig11:86930..87064Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 86931..87064 +
1622815585.9054322-CDS-S-ischiensis_contig11:88318..883911622815585.9054322-CDS-S-ischiensis_contig11:88318..88391Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 88319..88391 +
1695739785.7344124-CDS-S-ischiensis_contig11:88318..883911695739785.7344124-CDS-S-ischiensis_contig11:88318..88391Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 88319..88391 +
1622815585.9205399-CDS-S-ischiensis_contig11:88898..890311622815585.9205399-CDS-S-ischiensis_contig11:88898..89031Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 88899..89031 +
1695739785.745-CDS-S-ischiensis_contig11:88898..890311695739785.745-CDS-S-ischiensis_contig11:88898..89031Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 88899..89031 +
1622815585.9379394-CDS-S-ischiensis_contig11:89644..897091622815585.9379394-CDS-S-ischiensis_contig11:89644..89709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 89645..89709 +
1695739785.75392-CDS-S-ischiensis_contig11:89644..897091695739785.75392-CDS-S-ischiensis_contig11:89644..89709Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 89645..89709 +
1622815585.950589-CDS-S-ischiensis_contig11:90378..904761622815585.950589-CDS-S-ischiensis_contig11:90378..90476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 90379..90476 +
1695739785.769853-CDS-S-ischiensis_contig11:90378..904761695739785.769853-CDS-S-ischiensis_contig11:90378..90476Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 90379..90476 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1965.1prot_S-ischiensis_contig11.1965.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 86175..90476 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1965.1

>prot_S-ischiensis_contig11.1965.1 ID=prot_S-ischiensis_contig11.1965.1|Name=mRNA_S-ischiensis_contig11.1965.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=179bp
MCLDFLDEVMTGGEEVVDYGCGSGVLTVGAMLLGARHVTAVDIDPDILTH
AVENFRLNGLQVPGQVTATHTRFILPGELKGNVVVANILVGALKRLLPVL
VLAVEEGGLLCLSGFRRADMPVLKREYGMYMDWDDGMETSGSHPVWGEWM
RIVGRPKPGMREDMKEEIEASLSEVAVS*
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mRNA from alignment at S-ischiensis_contig11:85754..90684+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1965.1 ID=mRNA_S-ischiensis_contig11.1965.1|Name=mRNA_S-ischiensis_contig11.1965.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=4931bp|location=Sequence derived from alignment at S-ischiensis_contig11:85754..90684+ (Schizocladia ischiensis KU_0333)
CGCAGGGTTCAAGACGGTCCTTTGTGGGCGGTTACAAGTGGTGCCGGTGC
AGCGCTTGGAAGAGGCTGGGGAGGGGTTGCAGCAGATACGGATACTGGAG
GTGAGCTGTCAGCGTGTGGGTGTACAGGCGTGTGCGGAGGGTTTCAACAG
ATCCGGACACTTGGGGGGAGCTTTCGGCGTGCGGGAAGGTGTGGCTGTGT
GCGTGTCTGTGTGTGTGCCCGTGTGGCCGCGTGCCGTCCTCGCCGTTCCC
CTGCCCATCGATCCCCCCCCTCCTGACCCCCTCCCCCCACTCCCCCCCGC
TTTTCCTGACGTAGCCCCTCTCATCCTTGTCACTGCCTTCCGGTGTACTG
CCCCCCCCCGTTTCTGGTCCCCGCGGGCAAAGGGAGACGGCTGGGGCAAT
GGGGAGCACCCAACGACCAAAATGTGCCTTGATTTCCTGGATGAGGTTAT
GACAGGTGGGGATGATGGGTGGTGTCGCTCTGCCTTTGCAACCGTGTTGC
ACCTGTTTGGAAACTGTTGAGTGCCTTTGCAGCCGTGTTGAAAATAACGG
GTCAGTGTAACTTACCAACGTCCTCCTCCAGACCCCCCCCCCGAACTGTT
GCTCTTGGCGCTTTCTTGTGGGGCTGTGGTCGATACACTCTCTGGTGCCG
TGAAGACCCGTGTTTTTCTGCGGGGCAGTTTCCCCCTGGGAGTAAGGTAC
AGGACAGTAGGGTCGAAACAGTGCAGCGGTCTAATAACGTCACTCCCAAA
CAGTTGCTTTGTTGACCCTTGGAGGACGACGGTACGCAAACTCCACCACA
CTATCGCACTGCAGCACGCGGTGCTTCCTGCAGAATGCTGGTGCTTCGAA
GTGCTTGCAGGGAAATATAGTATACGAAGTAGAACCTGCGCACGAGCACG
TATGGGAACCTACTGCTTACTGTGCTCGAGTACTTGGAAGTACACTACTG
TAGGTACCTGCTCCGTCTCGACCAAGGCGCGTGGTCAATGGTCTCAGGGC
TATGGCAAGCACACCGTGAGTACGTATATGCATAGTAGTATATGTACTCT
GGTAGTTTCATGTATGGGCAATATGGGCACCGAGTGGTGCCGCGATGAGA
CGGTCTCGCGCGACCCTTTTCATCCCGAGGCCCACGCGAGCCGGCCCTTT
GTTGCCTCCCCATCTTCTTCCCTTCAGGGGGCGAGGAGGTGGTGGACTAC
GGCTGCGGTTCAGGCGTGCTCACCGTGGGGGCCATGCTGCTGGGGGCGCG
GCACGTGACCGCGGTGGACATTGACCCGGACATCCTGACCCACGCCGTGG
AGAACTTCCGGGTGAGCGGTTTAACTCTTCCCCGTCCCTTAGAGGACGGG
GGTTACTGCAGTATAAACAGGAACAACACGGGGCGAGGTGCGGGCCACGT
CACTAAAGACCTCAGCAGTGGCCCTTCCATTATGGACGCCAGCTACTGCA
GTACTTCCAAAGTAGTAGTTCAATGACAGGGACTATAGTGTACATCAGTG
TGGGGTATGGAACTATGCACTTGGTAGTACTACTGTACTACAGCAGGAAG
GTACTACTTCGAAGTACATAGTTGTATTGTACGAAAGGCTACCCTGTACC
GTGCGGGGACTGATGGGTGGTCCAGCACGGGAGTATACTGGCCGATGGTC
GGGGGCATGCCCGGGACACGGGGTAGTCCTGTCTGACGTTACTACATACA
CTCGAGTATATACTTGGAAGTATACTCTTTATATGGACCCTGGTGGTTAC
GCCTACGTAGGTGCAGTAATTTTCATGCTGGAACGCCTCAATACTACTAG
TAATGCGATTGCAGTAGTTTACAGCTCATATGGACGTCTCCTCAGTAGGA
ACGACTGGCTCAGTTTTTTCTTTACTGGCCGGTTTTCCGACCGCGGCTGA
GCGCGTGTGAACGAGCAAGCGGTGCGGCCGAGCGACCCCACCCACCTCTT
CTGCGCGTCCAAATGCCCCTAGGGGCACCCTGTCACTGCCGACGGGAGAA
TATAAACACAAAAAAACTAAGCCAAACCCGAACCCACACCCCCCCCGAAG
GGGGCACCTACGGAGGTATAAATATCAGGGTCGTACTCGAGTATATTATA
TGCTCCCACCCTGGCAGAGCTCTGCCAGGGGAGGGAGGGGGCCTACTCCG
TCTCGGTCAAGGCGCATGGTCATTGGTCTCGGGACTACGGCAAGCACTGT
TAGGTGTGAGTACATGGATATATACTACTTCCCCTCAGACTCAGTCCTCC
AACGGTCACCCATGCGCTTGGCTGTGGGCGGACATCAACCTGAACATACA
CCCTGGCCCATGCCGTGGACAAGTTCTGGCTGAGCGGCCTTCCAAACTGC
TTGCCTTGCTTTGCTCCCCGCCCCCCCCACAGAGGCAACAATGCTCCATC
CCATAGGGCTATCCATATAGGGTCTGTGCAGCTGTGGGACACTTGGTCAG
GCTCCTCCTCCAAGTACTCCACAATTTTTTGCAACGGCAAGCAGCCCATG
CCCCCACCCTCATGCGCGGGCCGCCTCCCTCTGCCTGCCCCCACCGCTGT
GACGGATCTGACCAGCTCAACGGCCTGCAGGTTCCAGGCCAGGTTACGGC
TACTCACACGCGGTTCATCCTTCCAGGAGAGCTCAAGGGTGAGAGTGAGC
AACCAGTCATCCCCAGGAGACCCCTGGGGGTGTGTATTATCACTGCCCGA
CGCGATGATCAGTGTGGTTTAACTGAGCACATACAGTACAGATGTAACTG
TAGGTGTTACTGTGTGCCTGTGTGTGTGTATGTGCTGCACGTGCGTGCGT
GTCTGTCTGTGTGCCCGCATGCGTGCGTGCTCGGTTGGCTTCTTGACCGG
CCCCTGCCCGGTGAGTGAACGGTTCCTCTCTGTAGCACGGGCCTGTTTGC
TTGGCCTGGCCTGCTTCCCGCCACCAAACTTCAAAGTACGAGCGCAAATC
ATCACACACACACACACGACCACGCACGTGCGCACAGACACACGAACGCA
CACACGCGTACGCGCACGCGCGCGCACGCACACACGCACACTTAACCCTT
TTACGCCTGCTAAACTGGGCTTTCACACTGAAACCCTATGACTATACGGA
CCCCAGGGGTAAAAGGGTTAATCATATGCAAACCTCACCATGCAGGCAAT
GTCGTGGTGGCCAACATCCTTGTGGGGGCCCTGAAGAGGCTGCTTCCGGT
GCTGGTGCTGGCCGTGGAGGAGGGGGGGCTGCTCTGCCTCTCCGGCTTCC
GTCGAGCCGACATGCCCGTCCTCAAGAGGTGCGTGCGTGCGTTTGTGTGT
TCGCCCACGCGTGCGTCTATATATATATATATGTACGTAGTATATACTTC
CAAGTATGTATGAGTACTCACGTGGTGCTTGCCGTAGTCCCGAGACCATT
GACCGTGTGCTTCATGTATGTTCTGACAAGCCAGGTGTTGTGATTCGGAC
AAGTCTTGCAAGGACGTCCTGCTGTGAGCTCTACACCTTCTACTCCTGTG
GTGCGGCTCCGTCGCGCCTCACACGTGCGCCGTTCTGCCCCGCTGCGTGG
CAACAGAGACGGTCCCCCGGCCGCCCCTTGTTTGTTTGTTTGCTGTTCTG
CCCTGCGAGTGGAGGAAGGGTTGCCTCTTCCGGTGAGGCCCAAACGTTTG
GGACGGTGCCCGGCACTCACTCGTGTATAGTCACTCCAAACTGGTTTAAC
GACATGTTGGCAGTTGTATCCCACTGAGGGTGCACAAGAAGCACGCTCTC
CTGTTCCCACTCCCTGATTCCCTCTCCCTCCGGGCCCTGCCTGCCTGCGC
TCGTACGTACGACACACACACACACACACACGCACATTTTGGTGCTCGCC
ACCCACGCCGGTCGGTCGTGTGACGGCCCGGGGGCGTGCAGAGAATACGG
CATGTACATGGACTGGGACGACGGTATGGAGACCTCTGGAAGCCACCCCG
TGTGGGGTGAGTGACTTGCGGGTGCCACGCAGGGCCGAATGTGCTGCTGG
TGCTGCCAAAGTACCTTGAATAGCTTGCGGTATGTCACTCGTCATGTTTG
CTGTTGTTTCACAGTATTGCTCTCAGCTGGTGTTACTTGTGTCTCTCATC
ATTTTTGTTGTTGTTTCACAGTATTGCTCTCGGCCGGTGTTGCTTGTATC
TTACCCACCCCCCCTCTCGCCCTCTGGCTGCCCACCTCGTGTGTGCGTAC
CTAGGATGCGCTGTACGGCTGTGCTTTGTTTCATGGATGAAAATCCTCGC
TTGGCTTGCGAGCATCCATCATCGGCGCACTGCGCTGCACTGCTACTGTA
CTCGTAGTACCGCACAGGCTGGGCCCACTGGCACCCCTTGGGGCCCGCCT
GAACTACGGTGCTGGAGTGCTCAGCTGAAGTGCTCAGTGCTTGTAGGTAC
CCCGTGCATCAGTATATATATATATGTACTCACCTTGTGCTTGCCGTAGT
CCCGAGACCATTGACCACGCGCCTCGGTCGAGACGGAGCAGGACCCCTCC
CTCCCCTGGCAGAGCCAGGGTGGTCAGTATGCTATAACAACAGCAACCCT
CTGGTATGCTGAGTGGGGTTCGTCAACAAAGTGCCGTGCCCCTGTCCCAT
TGCTAGGCCGCCCGCCCCCCCGCAGGGGAGTGGATGCGCATCGTTGGTAG
GCCCAAGCCGGGCATGCGGGAGGACATGAAGGAAGAGATCGAGGCCAGTC
TCTCGGAGGTGGCTGTGTCTTGAACCCGCAACGGGTGTCACTGGCATCGT
CTGCCTGCAGTTGACTGGGCTGAAGTCTGCGGAGAAGCGAAGTCTGTCGG
AACAGCGGGGAACGCCGTGTGGCTATTGACCTGCGCAGATGCTTAGACCA
TTTGTCTTCCTGACTGAGCTGTCATTCGTTCTTCCCCGGGTTGGTGTCTC
TGTACAAGTAATGCCCCTGGCGGGGAAGGGC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:85754..90684+

>mRNA_S-ischiensis_contig11.1965.1 ID=mRNA_S-ischiensis_contig11.1965.1|Name=mRNA_S-ischiensis_contig11.1965.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1074bp|location=Sequence derived from alignment at S-ischiensis_contig11:85754..90684+ (Schizocladia ischiensis KU_0333)
ATGTGCCTTGATTTCCTGGATGAGGTTATGACAGATGTGCCTTGATTTCC
TGGATGAGGTTATGACAGGGGGCGAGGAGGTGGTGGACTACGGCTGCGGT
TCAGGCGTGCTCACCGTGGGGGCCATGCTGCTGGGGGCGCGGCACGTGAC
CGCGGTGGACATTGACCCGGACATCCTGACCCACGCCGTGGAGAACTTCC
GGGGGGCGAGGAGGTGGTGGACTACGGCTGCGGTTCAGGCGTGCTCACCG
TGGGGGCCATGCTGCTGGGGGCGCGGCACGTGACCGCGGTGGACATTGAC
CCGGACATCCTGACCCACGCCGTGGAGAACTTCCGGCTCAACGGCCTGCA
GGTTCCAGGCCAGGTTACGGCTACTCACACGCGGTTCATCCTTCCAGGAG
AGCTCAAGGCTCAACGGCCTGCAGGTTCCAGGCCAGGTTACGGCTACTCA
CACGCGGTTCATCCTTCCAGGAGAGCTCAAGGGCAATGTCGTGGTGGCCA
ACATCCTTGTGGGGGCCCTGAAGAGGCTGCTTCCGGTGCTGGTGCTGGCC
GTGGAGGAGGGGGGGCTGCTCTGCCTCTCCGGCTTCCGTCGAGCCGACAT
GCCCGTCCTCAAGAGGCAATGTCGTGGTGGCCAACATCCTTGTGGGGGCC
CTGAAGAGGCTGCTTCCGGTGCTGGTGCTGGCCGTGGAGGAGGGGGGGCT
GCTCTGCCTCTCCGGCTTCCGTCGAGCCGACATGCCCGTCCTCAAGAGAG
AATACGGCATGTACATGGACTGGGACGACGGTATGGAGACCTCTGGAAGC
CACCCCGTGTGGGAGAATACGGCATGTACATGGACTGGGACGACGGTATG
GAGACCTCTGGAAGCCACCCCGTGTGGGGGGAGTGGATGCGCATCGTTGG
TAGGCCCAAGCCGGGCATGCGGGAGGACATGAAGGAAGAGATCGAGGCCA
GTCTCTCGGAGGTGGCTGTGTCTTGAGGGAGTGGATGCGCATCGTTGGTA
GGCCCAAGCCGGGCATGCGGGAGGACATGAAGGAAGAGATCGAGGCCAGT
CTCTCGGAGGTGGCTGTGTCTTGA
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