mRNA_S-ischiensis_contig11.1959.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1959.1
Unique NamemRNA_S-ischiensis_contig11.1959.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1959.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:55309..57895 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons3
Model size472
Cds size471
Stop0
Start0
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1959.1prot_S-ischiensis_contig11.1959.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 55310..57895 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.620903-CDS-S-ischiensis_contig11:55309..554781622815575.620903-CDS-S-ischiensis_contig11:55309..55478Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 55310..55478 -
1695739779.9939775-CDS-S-ischiensis_contig11:55309..554781695739779.9939775-CDS-S-ischiensis_contig11:55309..55478Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 55310..55478 -
1622815575.6308231-CDS-S-ischiensis_contig11:55951..560141622815575.6308231-CDS-S-ischiensis_contig11:55951..56014Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 55952..56014 -
1695739780.0035832-CDS-S-ischiensis_contig11:55951..560141695739780.0035832-CDS-S-ischiensis_contig11:55951..56014Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 55952..56014 -
1622815575.6401656-CDS-S-ischiensis_contig11:57656..578951622815575.6401656-CDS-S-ischiensis_contig11:57656..57895Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 57657..57895 -
1695739780.0131092-CDS-S-ischiensis_contig11:57656..578951695739780.0131092-CDS-S-ischiensis_contig11:57656..57895Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 57657..57895 -


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1959.1

>prot_S-ischiensis_contig11.1959.1 ID=prot_S-ischiensis_contig11.1959.1|Name=mRNA_S-ischiensis_contig11.1959.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=157bp
QVLVPLSLDTSQADRQQLPGKIQVAPALPASSSSSFCSTAAKAGAGNGAN
GSSGTPVAATAVHTNMASSINRQRIRRRASMIPRPRKSTLPVKAVMETPR
RTIPGQDTGGDGENHPPQQIPLTASTVASASSPAPWTHGPTGGGAKGQLQ
VPGSIGP
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mRNA from alignment at S-ischiensis_contig11:55309..57895-

Legend: polypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1959.1 ID=mRNA_S-ischiensis_contig11.1959.1|Name=mRNA_S-ischiensis_contig11.1959.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=2587bp|location=Sequence derived from alignment at S-ischiensis_contig11:55309..57895- (Schizocladia ischiensis KU_0333)
CAGGTTCTTGTGCCGCTGTCGCTGGACACCAGCCAGGCAGATAGGCAGCA
GCTGCCCGGGAAAATCCAGGTTGCCCCCGCCCTTCCTGCCTCCTCCTCCT
CTTCCTTTTGCAGCACTGCTGCCAAGGCCGGGGCGGGCAACGGTGCCAAT
GGCAGCAGCGGAACGCCGGTCGCCGCGACGGCCGTGCATACAAACATGGC
CTCCTCCATCAACAGGCAGAGGATCCGCCGGCGGGCCAGGTGCGGCAGGG
GGCGGTGTGCAATCTTGTGTGGTTTGATGCTTAGGTGCTGTGTAGAACAG
TATGGTAGTGCTACAGTATGTACTTCGAAGTAGCACTGAACATACTGTTA
GGTAGATGTTTGGTGCAGGTACAGTAAACATCATCCTACTACCATAATCG
TCGGAGAGATCTTGCCCCCCCATGCCAATTTTCGGGAGAACTTTTCTCGA
CAAATACTGGCCGGATTCGCGCGGGAAAACTCGGAAAATCTCCCTCAGGA
TCTGGGGGAACTTTTCGGAGAGTTTTCGGGGCAATTTGGGACCTTCTGGG
CTAGAAATATTCCCCCGAAAATTGGCCCGTGGGGGCCAAATCTCTCCGAC
GATTACGGTACTGTACACGTTCTCGGGGAGCACGGCACTGTACTATGCTG
TAATTGTGAGCCTCGCAGCATAGTAGAGCTGTACAGTACTACCTACTGTA
CTCCACTGTACATACTGCTCCGTCTCGAACGAGGCGCGTAGTCAATGGTC
TCGGGACTATGGCAAGCACCACGTGAGCACATATACAAAGTATATATATA
CATCTGCAAGCGATGGCACTACTGCACGTGTTGCAGTGCGCGGCAGACAA
ACACAAGGGTTGACCGTGACCCCTCGTCTTCAGGTAGGTGTGGGGCACGA
AGGAGCGAGCCTCTACTGTAAGCCGCTCGATTCACTTATCACTTAAGTGC
AGCGAGTGCCTACTCTAGGTATGTGTGTATTGCGCGCTTGCCCCTGGAGG
GGCAACAAGAATTAACCCTTTTACCCCTGCTACATTCGACTTCACACTAA
AACCCTATGATTGTACGGACCCAAGGGGGAAAGGGTTAAAGGCCGACATG
GAGAAGCGCCGTACCATGTTCTGTTGGCGCGCGTGTGTGTGCTCGCAAGT
GTGGACCACGGCGCCTTTCAGTGCTTATTATACTGCGTCCACCTTGGAGT
AGGTCGGCGGCTGCAGGGATGACAACTACTGCAGCTTGGCTTCAGTAGTT
GTTGCGCCAAATACAAGTACTCGTACCCATAAAGTATGAATACTCGTAAT
TTACTAGTGCTTGTGTTAGAGTACAGTCCAGAGTTGCTTGGAGCAAACGA
GAAAGGGCGCCTCGCTGTTGAGTGACAAAGTACTGGTGTAGCAGTCACAT
GGACTGCACCTCGCTTGGCCTTTGCTCTCGAACAGTCCGCGAAAAAGGAA
AGAAATCATTTGTGTGCTCTGAAGTACTGTTTAGGTCATGGCCCTCTCTC
ACCCCCAAAAAAAAAGGCATATTTGCATGTAATTAACCCCGCGTCCCAAC
TGCAATTGCCAGCCTCCCCAACAAGGAGAGGTTGGCCGTGTTCACCACCC
AACAACAACTGTTGCAGAGAACCGTCCCGTAGGGTCACCCCAGTGGGACG
TGTGGTACATGCGGTCAATTGCCATATTGCTTCGGCAGGCAACTCGTGAA
TACCCCCACGTCCCACCTGCTTGCTTTGGGTGCTTCCTTCCTCGAAGGGT
ACTGCATTGATATAAAAAAAGATGGATCGTATTGAATAAATATTGAATAT
TGATATTGACGATTTTCGGAGTCAATGCAGAACTCTACTTCGTCATGCCC
GCCACACTGCCTGCCGCGCGTGGCTGCACAGCATGATCCCGCGGCCTCGC
AAGTCCACCCTGCCGGTCAAGGCCGTCATGGAGACGCCTCGCAGGTGCGC
ACTACTGTCTGTACTGCAGAATTACCACAGTGTGTTCTACTGTACTGTAC
TGTACAATTACAACAGTGTGCGCTATTAGGATGGGTGGCACTGCTCTCGT
TGTTGTGCTTGCCATAGTCCCCGAGACCGTTGTTCAGGATTATCCAAGTA
CTACAGTAGGTATACTGGTACTGTAGCTTGGAGGATGAGTTTCAAAGGGA
GACTTCATCTTTGAGTAGTTGGGAGACCACATAGTATGCTGGCATGGCAC
AATATTATGTACTATAGCCACGCATTCCTCATGTCTTGAACTGTGACTCC
ACAGCTGCTGCAATATGCCTGCGAGTACAAGTACGCACTGCTATAGCACA
CCGACGCATCAGGAGTGTTCTACACCCCACGCCTCCCCTCCTCCCGAGTT
TTTGCCTCAACCCCCCCCCCCCCCCCCCCCCCCCCCCACACACACGAAAC
AAAACAAAACGAAACAGGACCATCCCGGGGCAGGACACAGGCGGCGACGG
AGAGAACCACCCCCCACAGCAGATACCCTTGACGGCGTCCACAGTGGCCA
GCGCCAGCTCGCCCGCCCCCTGGACACACGGCCCGACTGGCGGGGGGGCC
AAGGGGCAGCTGCAGGTGCCGGGGTCCATCGGGCCGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:55309..57895-

>mRNA_S-ischiensis_contig11.1959.1 ID=mRNA_S-ischiensis_contig11.1959.1|Name=mRNA_S-ischiensis_contig11.1959.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=942bp|location=Sequence derived from alignment at S-ischiensis_contig11:55309..57895- (Schizocladia ischiensis KU_0333)
CAGGTTCTTGTGCCGCTGTCGCTGGACACCAGCCAGGCAGATAGGCAGCA
GCTGCCCGGGAAAATCCAGGTTGCCCCCGCCCTTCCTGCCTCCTCCTCCT
CTTCCTTTTGCAGCACTGCTGCCAAGGCCGGGGCGGGCAACGGTGCCAAT
GGCAGCAGCGGAACGCCGGTCGCCGCGACGGCCGTGCATACAAACATGGC
CTCCTCCATCAACAGGCAGAGGATCCGCCGGCGGGCCAGCAGGTTCTTGT
GCCGCTGTCGCTGGACACCAGCCAGGCAGATAGGCAGCAGCTGCCCGGGA
AAATCCAGGTTGCCCCCGCCCTTCCTGCCTCCTCCTCCTCTTCCTTTTGC
AGCACTGCTGCCAAGGCCGGGGCGGGCAACGGTGCCAATGGCAGCAGCGG
AACGCCGGTCGCCGCGACGGCCGTGCATACAAACATGGCCTCCTCCATCA
ACAGGCAGAGGATCCGCCGGCGGGCCAGCATGATCCCGCGGCCTCGCAAG
TCCACCCTGCCGGTCAAGGCCGTCATGGAGACGCCTCGCAGCATGATCCC
GCGGCCTCGCAAGTCCACCCTGCCGGTCAAGGCCGTCATGGAGACGCCTC
GCAGGACCATCCCGGGGCAGGACACAGGCGGCGACGGAGAGAACCACCCC
CCACAGCAGATACCCTTGACGGCGTCCACAGTGGCCAGCGCCAGCTCGCC
CGCCCCCTGGACACACGGCCCGACTGGCGGGGGGGCCAAGGGGCAGCTGC
AGGTGCCGGGGTCCATCGGGCCGGACCATCCCGGGGCAGGACACAGGCGG
CGACGGAGAGAACCACCCCCCACAGCAGATACCCTTGACGGCGTCCACAG
TGGCCAGCGCCAGCTCGCCCGCCCCCTGGACACACGGCCCGACTGGCGGG
GGGGCCAAGGGGCAGCTGCAGGTGCCGGGGTCCATCGGGCCG
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