mRNA_S-ischiensis_contig11.1953.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig11.1953.1
Unique NamemRNA_S-ischiensis_contig11.1953.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig11.1953.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig11contigS-ischiensis_contig11:7611..7989 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons1
Model size379
Cds size378
Stop0
Start0
Relationships

The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815581.420955-CDS-S-ischiensis_contig11:7610..79881622815581.420955-CDS-S-ischiensis_contig11:7610..7988Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 7611..7988 +
1695739783.7650495-CDS-S-ischiensis_contig11:7610..79881695739783.7650495-CDS-S-ischiensis_contig11:7610..7988Schizocladia ischiensis KU_0333CDSS-ischiensis_contig11 7611..7988 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig11.1953.1prot_S-ischiensis_contig11.1953.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig11 7611..7988 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig11.1953.1

>prot_S-ischiensis_contig11.1953.1 ID=prot_S-ischiensis_contig11.1953.1|Name=mRNA_S-ischiensis_contig11.1953.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=126bp
VGGGGRGGKRRGGAACQPAVPGGQQEVGASSQSPILAAFFALCRRAAPTE
TARTCPGGTASCCLPPPYFSLHRTGRRRHPRRRRCHQGSSGGGRGSDGGG
GRTSPTAVGASPGPGARAKARARTGT
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mRNA from alignment at S-ischiensis_contig11:7611..7989+

Legend: CDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig11.1953.1 ID=mRNA_S-ischiensis_contig11.1953.1|Name=mRNA_S-ischiensis_contig11.1953.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=379bp|location=Sequence derived from alignment at S-ischiensis_contig11:7611..7989+ (Schizocladia ischiensis KU_0333)
GTTGGAGGAGGAGGAAGAGGAGGCAAAAGACGAGGCGGTGCAGCCTGCCA
ACCTGCCGTCCCTGGAGGACAACAGGAAGTGGGGGCATCCAGTCAGTCAC
CCATTCTGGCGGCCTTCTTCGCCCTGTGCCGCCGCGCAGCCCCCACTGAA
ACGGCACGAACCTGCCCCGGCGGCACTGCCTCGTGCTGCCTCCCCCCTCC
ATACTTTTCCCTCCACAGAACGGGCCGCCGGCGCCACCCCCGCAGGCGCC
GCTGTCACCAAGGCAGCAGCGGCGGTGGGCGTGGCAGCGACGGCGGCGGC
GGCCGGACCAGCCCCACAGCAGTCGGGGCTAGCCCCGGGCCCGGGGCCAG
GGCCAAGGCCAGAGCCAGGACCGGGACTC
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Coding sequence (CDS) from alignment at S-ischiensis_contig11:7611..7989+

>mRNA_S-ischiensis_contig11.1953.1 ID=mRNA_S-ischiensis_contig11.1953.1|Name=mRNA_S-ischiensis_contig11.1953.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=756bp|location=Sequence derived from alignment at S-ischiensis_contig11:7611..7989+ (Schizocladia ischiensis KU_0333)
GTTGGAGGAGGAGGAAGAGGAGGCAAAAGACGAGGCGGTGCAGCCTGCCA
ACCTGCCGTCCCTGGAGGACAACAGGAAGTGGGGGCATCCAGTCAGTCAC
CCATTCTGGCGGCCTTCTTCGCCCTGTGCCGCCGCGCAGCCCCCACTGAA
ACGGCACGAACCTGCCCCGGCGGCACTGCCTCGTGCTGCCTCCCCCCTCC
ATACTTTTCCCTCCACAGAACGGGCCGCCGGCGCCACCCCCGCAGGCGCC
GCTGTCACCAAGGCAGCAGCGGCGGTGGGCGTGGCAGCGACGGCGGCGGC
GGCCGGACCAGCCCCACAGCAGTCGGGGCTAGCCCCGGGCCCGGGGCCAG
GGCCAAGGCCAGAGCCAGGACCGGGACTGTTGGAGGAGGAGGAAGAGGAG
GCAAAAGACGAGGCGGTGCAGCCTGCCAACCTGCCGTCCCTGGAGGACAA
CAGGAAGTGGGGGCATCCAGTCAGTCACCCATTCTGGCGGCCTTCTTCGC
CCTGTGCCGCCGCGCAGCCCCCACTGAAACGGCACGAACCTGCCCCGGCG
GCACTGCCTCGTGCTGCCTCCCCCCTCCATACTTTTCCCTCCACAGAACG
GGCCGCCGGCGCCACCCCCGCAGGCGCCGCTGTCACCAAGGCAGCAGCGG
CGGTGGGCGTGGCAGCGACGGCGGCGGCGGCCGGACCAGCCCCACAGCAG
TCGGGGCTAGCCCCGGGCCCGGGGCCAGGGCCAAGGCCAGAGCCAGGACC
GGGACT
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