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Homology
The following BLAST results are available for this feature:
Alignments
The following features are aligned
Analyses
This mRNA is derived from or has results from the following analyses
Properties
| Property Name | Value |
|---|
| Hectar predicted targeting category | other localisation |
| Exons | 1 |
| Model size | 984 |
| Cds size | 831 |
| Stop | 1 |
| Start | 1 |
Relationships
The following polypeptide feature(s) derives from this mRNA:
The following UTR feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815574.024142-UTR-S-ischiensis_contig109:169846..169868 | 1622815574.024142-UTR-S-ischiensis_contig109:169846..169868 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig109 169847..169868 + |
| 1695739779.0146537-UTR-S-ischiensis_contig109:169846..169868 | 1695739779.0146537-UTR-S-ischiensis_contig109:169846..169868 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig109 169847..169868 + |
| 1622815574.0462482-UTR-S-ischiensis_contig109:170699..170830 | 1622815574.0462482-UTR-S-ischiensis_contig109:170699..170830 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig109 170700..170830 + |
| 1695739779.034388-UTR-S-ischiensis_contig109:170699..170830 | 1695739779.034388-UTR-S-ischiensis_contig109:170699..170830 | Schizocladia ischiensis KU_0333 | UTR | S-ischiensis_contig109 170700..170830 + |
The following CDS feature(s) are a part of this mRNA:
| Feature Name | Unique Name | Species | Type | Position |
|---|
| 1622815574.036344-CDS-S-ischiensis_contig109:169868..170699 | 1622815574.036344-CDS-S-ischiensis_contig109:169868..170699 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig109 169869..170699 + |
| 1695739779.0245228-CDS-S-ischiensis_contig109:169868..170699 | 1695739779.0245228-CDS-S-ischiensis_contig109:169868..170699 | Schizocladia ischiensis KU_0333 | CDS | S-ischiensis_contig109 169869..170699 + |
Sequences
The following sequences are available for this feature:
protein sequence of mRNA_S-ischiensis_contig109.1949.1 >prot_S-ischiensis_contig109.1949.1 ID=prot_S-ischiensis_contig109.1949.1|Name=mRNA_S-ischiensis_contig109.1949.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=277bp
MGVAVNRETALVVVGCGILDSGAYVSVVAETTVNRGLKPGALNMHAIEST
PAIALGGFSKSSAAVRATRTSTLQVRLGTEIVEHDLVIVPHVCLPILVGQ
QDTFDAFDLVTRRHTRSGTTVYFSYGNEPRQSDLGRRRTARRTRRILARP
YREPHPRNGCRAGTSIEEVLVQILAVVSSGSKIFLEPDDEAVGKAQLAVF
ARNMLSPETRLLGQDLLPTVKSVLGVGTGTGRRLETGERQVYVLLRKQFP
LRRGLNKPPLKLWRGCVTVRRGRPFL* back to topmRNA from alignment at S-ischiensis_contig109:169847..170830+ Legend: UTRpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >mRNA_S-ischiensis_contig109.1949.1 ID=mRNA_S-ischiensis_contig109.1949.1|Name=mRNA_S-ischiensis_contig109.1949.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=984bp|location=Sequence derived from alignment at S-ischiensis_contig109:169847..170830+ (Schizocladia ischiensis KU_0333)
TGAAGTTTCGTCTCGAGGAGGGATGGGAGTCGCTGTAAATAGGGAGACAG
CACTCGTGGTGGTGGGCTGTGGGATTCTTGACTCTGGGGCATATGTATCT
GTTGTGGCTGAAACGACAGTAAATCGGGGGCTGAAACCCGGTGCGTTGAA
TATGCACGCGATCGAGTCTACCCCGGCTATTGCATTAGGAGGGTTTAGTA
AATCCTCGGCCGCAGTTCGAGCGACGCGAACAAGTACGTTGCAAGTGCGC
TTGGGCACGGAAATTGTAGAGCATGATTTGGTGATTGTGCCGCATGTCTG
TCTGCCGATACTGGTCGGGCAGCAGGACACCTTTGATGCATTTGATTTGG
TTACCAGGAGGCACACAAGATCTGGGACCACGGTATATTTTAGTTACGGC
AACGAACCGCGGCAGTCGGATTTGGGAAGGAGGAGGACCGCGAGGCGGAC
GCGACGAATTTTGGCGCGACCCTACCGCGAACCCCACCCCAGAAATGGTT
GCAGGGCCGGGACGTCGATAGAAGAGGTGTTGGTACAGATACTTGCAGTC
GTTAGTAGCGGCAGTAAGATATTTCTGGAGCCTGACGACGAAGCTGTTGG
CAAAGCCCAGCTTGCTGTATTTGCGCGGAATATGTTGTCCCCTGAGACTC
GATTGTTGGGGCAAGACTTGTTGCCAACAGTAAAGTCAGTGCTGGGAGTA
GGTACAGGTACAGGCCGTCGCCTCGAAACAGGCGAGCGCCAGGTATATGT
CCTACTAAGGAAACAGTTTCCGCTTCGGAGGGGCTTGAACAAACCCCCAC
TGAAACTTTGGAGGGGCTGCGTGACAGTGCGGCGAGGAAGGCCTTTTCTG
TGATGTGGAAGAAATTGGCACGATTGAGTAAGTTTGAAGGATGGTCGGCC
TGTGAGATAGTGGCTGTATTTTGGAGGGGCTCGACGACCGGGGGCGGAGC
GCCTGGCCGTTCAGGCCGCGCGAGTGTACGGTAC back to topCoding sequence (CDS) from alignment at S-ischiensis_contig109:169847..170830+ >mRNA_S-ischiensis_contig109.1949.1 ID=mRNA_S-ischiensis_contig109.1949.1|Name=mRNA_S-ischiensis_contig109.1949.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=1662bp|location=Sequence derived from alignment at S-ischiensis_contig109:169847..170830+ (Schizocladia ischiensis KU_0333)
ATGGGAGTCGCTGTAAATAGGGAGACAGCACTCGTGGTGGTGGGCTGTGG
GATTCTTGACTCTGGGGCATATGTATCTGTTGTGGCTGAAACGACAGTAA
ATCGGGGGCTGAAACCCGGTGCGTTGAATATGCACGCGATCGAGTCTACC
CCGGCTATTGCATTAGGAGGGTTTAGTAAATCCTCGGCCGCAGTTCGAGC
GACGCGAACAAGTACGTTGCAAGTGCGCTTGGGCACGGAAATTGTAGAGC
ATGATTTGGTGATTGTGCCGCATGTCTGTCTGCCGATACTGGTCGGGCAG
CAGGACACCTTTGATGCATTTGATTTGGTTACCAGGAGGCACACAAGATC
TGGGACCACGGTATATTTTAGTTACGGCAACGAACCGCGGCAGTCGGATT
TGGGAAGGAGGAGGACCGCGAGGCGGACGCGACGAATTTTGGCGCGACCC
TACCGCGAACCCCACCCCAGAAATGGTTGCAGGGCCGGGACGTCGATAGA
AGAGGTGTTGGTACAGATACTTGCAGTCGTTAGTAGCGGCAGTAAGATAT
TTCTGGAGCCTGACGACGAAGCTGTTGGCAAAGCCCAGCTTGCTGTATTT
GCGCGGAATATGTTGTCCCCTGAGACTCGATTGTTGGGGCAAGACTTGTT
GCCAACAGTAAAGTCAGTGCTGGGAGTAGGTACAGGTACAGGCCGTCGCC
TCGAAACAGGCGAGCGCCAGGTATATGTCCTACTAAGGAAACAGTTTCCG
CTTCGGAGGGGCTTGAACAAACCCCCACTGAAACTTTGGAGGGGCTGCGT
GACAGTGCGGCGAGGAAGGCCTTTTCTGTGAATGGGAGTCGCTGTAAATA
GGGAGACAGCACTCGTGGTGGTGGGCTGTGGGATTCTTGACTCTGGGGCA
TATGTATCTGTTGTGGCTGAAACGACAGTAAATCGGGGGCTGAAACCCGG
TGCGTTGAATATGCACGCGATCGAGTCTACCCCGGCTATTGCATTAGGAG
GGTTTAGTAAATCCTCGGCCGCAGTTCGAGCGACGCGAACAAGTACGTTG
CAAGTGCGCTTGGGCACGGAAATTGTAGAGCATGATTTGGTGATTGTGCC
GCATGTCTGTCTGCCGATACTGGTCGGGCAGCAGGACACCTTTGATGCAT
TTGATTTGGTTACCAGGAGGCACACAAGATCTGGGACCACGGTATATTTT
AGTTACGGCAACGAACCGCGGCAGTCGGATTTGGGAAGGAGGAGGACCGC
GAGGCGGACGCGACGAATTTTGGCGCGACCCTACCGCGAACCCCACCCCA
GAAATGGTTGCAGGGCCGGGACGTCGATAGAAGAGGTGTTGGTACAGATA
CTTGCAGTCGTTAGTAGCGGCAGTAAGATATTTCTGGAGCCTGACGACGA
AGCTGTTGGCAAAGCCCAGCTTGCTGTATTTGCGCGGAATATGTTGTCCC
CTGAGACTCGATTGTTGGGGCAAGACTTGTTGCCAACAGTAAAGTCAGTG
CTGGGAGTAGGTACAGGTACAGGCCGTCGCCTCGAAACAGGCGAGCGCCA
GGTATATGTCCTACTAAGGAAACAGTTTCCGCTTCGGAGGGGCTTGAACA
AACCCCCACTGAAACTTTGGAGGGGCTGCGTGACAGTGCGGCGAGGAAGG
CCTTTTCTGTGA back to top
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