mRNA_S-ischiensis_contig109.1947.1 (mRNA) Schizocladia ischiensis KU_0333

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NamemRNA_S-ischiensis_contig109.1947.1
Unique NamemRNA_S-ischiensis_contig109.1947.1
TypemRNA
OrganismSchizocladia ischiensis KU_0333 (Schizocladia ischiensis KU_0333)
Homology
The following BLAST results are available for this feature:
BLAST of mRNA_S-ischiensis_contig109.1947.1 vs. uniprot
Analysis Date: 2022-09-19 (Diamond blastx: OGS1.0 vs UniRef90)
Total hits: 0
Match NameE-valueIdentityDescription
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Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
S-ischiensis_contig109contigS-ischiensis_contig109:149753..150608 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Diamond blastx: OGS1.0 vs UniRef902022-09-19
OGS1.0 of Schizocladia ischiensis KU_03332021-02-24
Properties
Property NameValue
Hectar predicted targeting categoryother localisation
Exons2
Model size617
Cds size417
Stop1
Start1
Relationships

The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
mRNA_S-ischiensis_contig109.1947.1prot_S-ischiensis_contig109.1947.1Schizocladia ischiensis KU_0333polypeptideS-ischiensis_contig109 150083..150499 +


The following UTR feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.2884855-UTR-S-ischiensis_contig109:149752..1498181622815575.2884855-UTR-S-ischiensis_contig109:149752..149818Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 149753..149818 +
1695739779.8227077-UTR-S-ischiensis_contig109:149752..1498181695739779.8227077-UTR-S-ischiensis_contig109:149752..149818Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 149753..149818 +
1622815575.3013184-UTR-S-ischiensis_contig109:150057..1500821622815575.3013184-UTR-S-ischiensis_contig109:150057..150082Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 150058..150082 +
1695739779.8314078-UTR-S-ischiensis_contig109:150057..1500821695739779.8314078-UTR-S-ischiensis_contig109:150057..150082Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 150058..150082 +
1622815575.3255389-UTR-S-ischiensis_contig109:150499..1506081622815575.3255389-UTR-S-ischiensis_contig109:150499..150608Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 150500..150608 +
1695739779.8481195-UTR-S-ischiensis_contig109:150499..1506081695739779.8481195-UTR-S-ischiensis_contig109:150499..150608Schizocladia ischiensis KU_0333UTRS-ischiensis_contig109 150500..150608 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
1622815575.3131106-CDS-S-ischiensis_contig109:150082..1504991622815575.3131106-CDS-S-ischiensis_contig109:150082..150499Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 150083..150499 +
1695739779.8398664-CDS-S-ischiensis_contig109:150082..1504991695739779.8398664-CDS-S-ischiensis_contig109:150082..150499Schizocladia ischiensis KU_0333CDSS-ischiensis_contig109 150083..150499 +


Sequences
The following sequences are available for this feature:

protein sequence of mRNA_S-ischiensis_contig109.1947.1

>prot_S-ischiensis_contig109.1947.1 ID=prot_S-ischiensis_contig109.1947.1|Name=mRNA_S-ischiensis_contig109.1947.1|organism=Schizocladia ischiensis KU_0333|type=polypeptide|length=139bp
MIDKVLDYIGPGSFLFVAGVCRAWQASWAHARRGADGNLTTRDKVTTWGQ
AVASISRLTEARAVGLPWDARVCSHAAAAGNREVMEWARANGCTWGAYTC
TRAVVAGHLELVEWARGEGAPGTRTRARTRRRGACWMC*
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mRNA from alignment at S-ischiensis_contig109:149753..150608+

Legend: UTRpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>mRNA_S-ischiensis_contig109.1947.1 ID=mRNA_S-ischiensis_contig109.1947.1|Name=mRNA_S-ischiensis_contig109.1947.1|organism=Schizocladia ischiensis KU_0333|type=mRNA|length=856bp|location=Sequence derived from alignment at S-ischiensis_contig109:149753..150608+ (Schizocladia ischiensis KU_0333)
GAAAGGAAGGAACGGGAATGAGCCCATCGTCTGCCTGGTCGCCAAAGAGG
ACGTGACAGTGAAGAGGTGTGTTGGGTGATGCGCTGGCTGCTCACATGCC
TCATCAGTTCGAGTTATTGTAGTGGACATAGTTACCTTACACTCTGTGGT
ACCGCAGCAGAAACGCCGACTCCCTCCGCCGGAGGTGACCTCGCTCGGAT
CCATCGTCTTCCCCCTCGCCACAGCCGCCTTGACACCGCCGCCCTCGGCC
CCACCCCCGCCTTATGCACGACGTGGCGCTCCCTACAATCCCCGTGACCA
TCCAGGGACAACCCCCTCCAGAAGGCCGACATGATCGACAAGGTGTTGGA
TTACATTGGCCCCGGCAGCTTCCTCTTCGTCGCCGGTGTCTGCCGCGCTT
GGCAGGCATCCTGGGCCCACGCCCGCCGCGGGGCTGATGGCAACCTCACC
ACCAGGGACAAGGTCACAACATGGGGCCAGGCCGTCGCCTCCATCTCCCG
CCTGACCGAGGCCCGCGCTGTCGGCCTCCCCTGGGACGCCCGGGTCTGCT
CACACGCCGCCGCCGCCGGGAACCGCGAGGTGATGGAGTGGGCCCGCGCA
AACGGCTGCACCTGGGGTGCCTACACCTGCACCCGGGCCGTGGTCGCGGG
ACACCTGGAGCTGGTGGAGTGGGCTCGGGGGGAGGGGGCCCCTGGGACAC
GGACACGTGCGCGCACGAGGCGGCGCGGGGCCTGCTGGATGTGCTGAAAT
TGCTGCGTGCCAGGAAGTGCCCCTGGGACGCGCGCACCTGCTCGGCGGCG
GCGGCGGCAGCGGGCCACCTGGAAGTGCTCCAGTGGGCCCGGGAGGCCCG
GGAGGG
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Coding sequence (CDS) from alignment at S-ischiensis_contig109:149753..150608+

>mRNA_S-ischiensis_contig109.1947.1 ID=mRNA_S-ischiensis_contig109.1947.1|Name=mRNA_S-ischiensis_contig109.1947.1|organism=Schizocladia ischiensis KU_0333|type=CDS|length=834bp|location=Sequence derived from alignment at S-ischiensis_contig109:149753..150608+ (Schizocladia ischiensis KU_0333)
ATGATCGACAAGGTGTTGGATTACATTGGCCCCGGCAGCTTCCTCTTCGT
CGCCGGTGTCTGCCGCGCTTGGCAGGCATCCTGGGCCCACGCCCGCCGCG
GGGCTGATGGCAACCTCACCACCAGGGACAAGGTCACAACATGGGGCCAG
GCCGTCGCCTCCATCTCCCGCCTGACCGAGGCCCGCGCTGTCGGCCTCCC
CTGGGACGCCCGGGTCTGCTCACACGCCGCCGCCGCCGGGAACCGCGAGG
TGATGGAGTGGGCCCGCGCAAACGGCTGCACCTGGGGTGCCTACACCTGC
ACCCGGGCCGTGGTCGCGGGACACCTGGAGCTGGTGGAGTGGGCTCGGGG
GGAGGGGGCCCCTGGGACACGGACACGTGCGCGCACGAGGCGGCGCGGGG
CCTGCTGGATGTGCTGAATGATCGACAAGGTGTTGGATTACATTGGCCCC
GGCAGCTTCCTCTTCGTCGCCGGTGTCTGCCGCGCTTGGCAGGCATCCTG
GGCCCACGCCCGCCGCGGGGCTGATGGCAACCTCACCACCAGGGACAAGG
TCACAACATGGGGCCAGGCCGTCGCCTCCATCTCCCGCCTGACCGAGGCC
CGCGCTGTCGGCCTCCCCTGGGACGCCCGGGTCTGCTCACACGCCGCCGC
CGCCGGGAACCGCGAGGTGATGGAGTGGGCCCGCGCAAACGGCTGCACCT
GGGGTGCCTACACCTGCACCCGGGCCGTGGTCGCGGGACACCTGGAGCTG
GTGGAGTGGGCTCGGGGGGAGGGGGCCCCTGGGACACGGACACGTGCGCG
CACGAGGCGGCGCGGGGCCTGCTGGATGTGCTGA
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